Csa1G109360 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G109360
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8841584 .. 8842167 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTCCAGCCCTTCTCCACCGGCATGTTTTTCAGTTTTCTCATCGGCGGACAACCTAGCCCAGTCAATCAATCATTCAGACATACAACTCAGATCAGATAATTACCTACCGTCCACTGCACTTTGTCACCGTCTTCACGCAGAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAAATCCTGTATTTTTCGATTTTCGATTTTCGATTTTCGATTTCCGATTAGATTAGAGTCATTCGGTTTGGGTCACTCAATCAAACTCTTTTCTT

mRNA sequence

ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTCCAGCCCTTCTCCACCGGCATAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAA

Coding sequence (CDS)

ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTCCAGCCCTTCTCCACCGGCATAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAA

Protein sequence

MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDSCPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPYFEQP*
Homology
[Close]
BLAST of Csa1G109360 vs. TrEMBL
Match: A0A0A0LSN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109360 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 6.9e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60
           MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS
Sbjct: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60

Query: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120
           CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY
Sbjct: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120

Query: 121 FEQP 125
           FEQP
Sbjct: 121 FEQP 124

[Close]
BLAST of Csa1G109360 vs. NCBI nr
Match: gi|700209717|gb|KGN64813.1| (hypothetical protein Csa_1G109360 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 9.9e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60
           MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS
Sbjct: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60

Query: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120
           CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY
Sbjct: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120

Query: 121 FEQP 125
           FEQP
Sbjct: 121 FEQP 124

The following BLAST results are available for this feature:
BLAST of Csa1G109360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSN9_CUCSA6.9e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109360 PE=4 SV=1[more]
BLAST of Csa1G109360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209717|gb|KGN64813.1|9.9e-64100.00hypothetical protein Csa_1G109360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G109360.1Csa1G109360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G109360CSPI01G13410Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G109360Cucurbita maxima (Rimu)cmacuB203
Csa1G109360Cucurbita maxima (Rimu)cmacuB431
Csa1G109360Cucurbita moschata (Rifu)cmocuB188
Csa1G109360Cucurbita moschata (Rifu)cmocuB421
Csa1G109360Melon (DHL92) v3.5.1cumeB015
Csa1G109360Watermelon (Charleston Gray)cuwcgB037
Csa1G109360Watermelon (97103) v1cuwmB010
Csa1G109360Cucurbita pepo (Zucchini)cpecuB516
Csa1G109360Cucurbita pepo (Zucchini)cpecuB528
Csa1G109360Bottle gourd (USVL1VR-Ls)culsiB044
Csa1G109360Cucumber (Gy14) v2cgybcuB001
Csa1G109360Cucumber (Gy14) v2cgybcuB097
Csa1G109360Melon (DHL92) v3.6.1cumedB010
Csa1G109360Silver-seed gourdcarcuB0360
Csa1G109360Silver-seed gourdcarcuB0472
Csa1G109360Silver-seed gourdcarcuB1083
Csa1G109360Watermelon (97103) v2cuwmbB034
Csa1G109360Wax gourdcuwgoB016
Csa1G109360Wax gourdcuwgoB049
Csa1G109360Cucumber (Chinese Long) v2cucuB018
Csa1G109360Cucumber (Gy14) v1cgycuB419