CSPI01G13410 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13410
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 8875041 .. 8875532 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTACAGCCCTTCTCCACCGGCATGTTTTTCAGTTTTCTCATCGGCGGACAACCTAGCCCAGTCAATCAATCATTCAGACATACAACTCAGATCAGATAATTACCTACCGTCCACTGCACTTTGTCACCGTCTTCACGCAGAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAA

mRNA sequence

ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTACAGCCCTTCTCCACCGGCATAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAA

Coding sequence (CDS)

ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTACAGCCCTTCTCCACCGGCATAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAA

Homology

[Close]

BLAST of CSPI01G13410 vs. TrEMBL
Match: A0A0A0LSN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109360 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.3e-61
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1


Query: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFTALLHRHNYQSSIRRALPDS 60
           MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKF ALLHRHNYQSSIRRALPDS
Sbjct: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60

Query: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120
           CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY
Sbjct: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120

Query: 121 FEQP 125
           FEQP
Sbjct: 121 FEQP 124

[Close]

BLAST of CSPI01G13410 vs. NCBI nr
Match: gi|700209717|gb|KGN64813.1| (hypothetical protein Csa_1G109360 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-60
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1


Query: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFTALLHRHNYQSSIRRALPDS 60
           MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKF ALLHRHNYQSSIRRALPDS
Sbjct: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60

Query: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120
           CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY
Sbjct: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120

Query: 121 FEQP 125
           FEQP
Sbjct: 121 FEQP 124

The following BLAST results are available for this feature:

BLAST of CSPI01G13410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G13410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSN9_CUCSA	9.3e-61	99.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109360 PE=4 SV=1	[more]

BLAST of CSPI01G13410 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G13410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209717\|gb\|KGN64813.1\|	1.3e-60	99.19	hypothetical protein Csa_1G109360 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13410.1	CSPI01G13410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G13410	Csa1G109360	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13410	CsaV3_1G013600	Cucumber (Chinese Long) v3	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13410	Watermelon (97103) v2	cpiwmbB034
CSPI01G13410	Wax gourd	cpiwgoB017
CSPI01G13410	Wax gourd	cpiwgoB049
CSPI01G13410	Wild cucumber (PI 183967)	cpicpiB017
CSPI01G13410	Cucumber (Gy14) v1	cgycpiB442
CSPI01G13410	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G13410	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G13410	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13410	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G13410	Cucumber (Chinese Long) v2	cpicuB026
CSPI01G13410	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13410	Watermelon (Charleston Gray)	cpiwcgB007
CSPI01G13410	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G13410	Watermelon (97103) v1	cpiwmB007
CSPI01G13410	Watermelon (97103) v1	cpiwmB012
CSPI01G13410	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G13410	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G13410	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G13410	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13410	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G13410	Silver-seed gourd	carcpiB0477
CSPI01G13410	Silver-seed gourd	carcpiB1105