Csa1G109360.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G109360.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8841584 .. 8842167 (+)
Sequence length375
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTCCAGCCCTTCTCCACCGGCATGTTTTTCAGTTTTCTCATCGGCGGACAACCTAGCCCAGTCAATCAATCATTCAGACATACAACTCAGATCAGATAATTACCTACCGTCCACTGCACTTTGTCACCGTCTTCACGCAGAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAAATCCTGTATTTTTCGATTTTCGATTTTCGATTTTCGATTTCCGATTAGATTAGAGTCATTCGGTTTGGGTCACTCAATCAAACTCTTTTCTT

mRNA sequence

ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTCCAGCCCTTCTCCACCGGCATAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAA

Coding sequence (CDS)

ATGGACGAGCTTGAAATTCTCCTAATTAGCAGTTCAGTCTCCTATTCACCTATTCAAAGATTGTTCAACAGAAAATTATCACATTCACATGGCATCAGAGACCTAAAAGAAAAGAAATTTCCAGCCCTTCTCCACCGGCATAACTACCAGTCAAGCATTCGCAGAGCACTCCCAGACTCGTGCCCACACCGCCGCTGCTCAGCGCTGGCTCCGTTGCAGGCACCGTCGACGGACGCCAAACCAGCCGCCGCCTCTAATTGCAAAAGGCCCAAAATACGTTCGCTCGCTCGCGCAGTTCACAGATCGGCTCGGATTCACGTTGTGAAAACCCCGAAGAAGATAGAAAGCCGCACCCCTTATTTCGAACAGCCCTAA

Protein sequence

MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDSCPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPYFEQP*
Homology
[Close]
BLAST of Csa1G109360.1 vs. TrEMBL
Match: A0A0A0LSN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109360 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 6.9e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60
           MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS
Sbjct: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60

Query: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120
           CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY
Sbjct: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120

Query: 121 FEQP 125
           FEQP
Sbjct: 121 FEQP 124

[Close]
BLAST of Csa1G109360.1 vs. NCBI nr
Match: gi|700209717|gb|KGN64813.1| (hypothetical protein Csa_1G109360 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 9.9e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60
           MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS
Sbjct: 1   MDELEILLISSSVSYSPIQRLFNRKLSHSHGIRDLKEKKFPALLHRHNYQSSIRRALPDS 60

Query: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120
           CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY
Sbjct: 61  CPHRRCSALAPLQAPSTDAKPAAASNCKRPKIRSLARAVHRSARIHVVKTPKKIESRTPY 120

Query: 121 FEQP 125
           FEQP
Sbjct: 121 FEQP 124

The following BLAST results are available for this feature:
BLAST of Csa1G109360.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSN9_CUCSA6.9e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G109360 PE=4 SV=1[more]
BLAST of Csa1G109360.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209717|gb|KGN64813.1|9.9e-64100.00hypothetical protein Csa_1G109360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G109360Csa1G109360gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G109360.1Csa1G109360.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G109360.1.cds1Csa1G109360.1.cds1CDS
Csa1G109360.1.cds2Csa1G109360.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G109360.1.utr3p1Csa1G109360.1.utr3p1three_prime_UTR