Csa1G050580 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G050580
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5987626 .. 5988035 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAAGTAATCCGAACAGAACCGGCGCCCAGTCCAACATTGCTTCGCTTCGGTTCCGGCTCCGATGCCGGCGACGATGAGTTTAATAAGGTTAAAGAAGGAGGTGGGTGGTTTATAATTTTGCATCGTATTTATAGAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

mRNA sequence

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAATCCAACATTGCTTCGCTTCGGTTCCGGCTCCGATGCCGGCGACGATGAGTTTAATAAGGTTAAAGAAGGAGGTGGGTGGTTTATAATTTTGCATCGTATTTATAGAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

Coding sequence (CDS)

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAATCCAACATTGCTTCGCTTCGGTTCCGGCTCCGATGCCGGCGACGATGAGTTTAATAAGGTTAAAGAAGGAGGTGGGTGGTTTATAATTTTGCATCGTATTTATAGAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

Protein sequence

MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKISTAVALSLC*
Homology
[Close]
BLAST of Csa1G050580 vs. TrEMBL
Match: A0A0A0LTW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050580 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 1   MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60
           MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL
Sbjct: 1   MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60

Query: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120
           EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST
Sbjct: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120

Query: 121 AVALSLC 128
           AVALSLC
Sbjct: 121 AVALSLC 127

[Close]
BLAST of Csa1G050580 vs. NCBI nr
Match: gi|700209323|gb|KGN64419.1| (hypothetical protein Csa_1G050580 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.4e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 1   MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60
           MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL
Sbjct: 1   MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60

Query: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120
           EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST
Sbjct: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120

Query: 121 AVALSLC 128
           AVALSLC
Sbjct: 121 AVALSLC 127

The following BLAST results are available for this feature:
BLAST of Csa1G050580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTW0_CUCSA2.3e-67100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050580 PE=4 SV=1[more]
BLAST of Csa1G050580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209323|gb|KGN64419.1|3.4e-67100.00hypothetical protein Csa_1G050580 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU111750cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G050580.1Csa1G050580.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU111750CU111750transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G050580CSPI01G09640Wild cucumber (PI 183967)cpicuB000
Csa1G050580CmaCh13G008120Cucurbita maxima (Rimu)cmacuB204
Csa1G050580CsGy1G009680Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G050580Cucurbita pepo (Zucchini)cpecuB029
Csa1G050580Cucurbita pepo (Zucchini)cpecuB359
Csa1G050580Cucurbita pepo (Zucchini)cpecuB515
Csa1G050580Cucurbita pepo (Zucchini)cpecuB648
Csa1G050580Bottle gourd (USVL1VR-Ls)culsiB067
Csa1G050580Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G050580Cucumber (Gy14) v2cgybcuB012
Csa1G050580Melon (DHL92) v3.6.1cumedB022
Csa1G050580Melon (DHL92) v3.6.1cumedB043
Csa1G050580Silver-seed gourdcarcuB0393
Csa1G050580Silver-seed gourdcarcuB0523
Csa1G050580Silver-seed gourdcarcuB1017
Csa1G050580Watermelon (97103) v2cuwmbB032
Csa1G050580Watermelon (97103) v2cuwmbB076
Csa1G050580Wax gourdcuwgoB032
Csa1G050580Cucumber (Chinese Long) v2cucuB002
Csa1G050580Cucumber (Gy14) v1cgycuB225
Csa1G050580Cucumber (Gy14) v1cgycuB547
Csa1G050580Cucurbita maxima (Rimu)cmacuB071
Csa1G050580Cucurbita maxima (Rimu)cmacuB112
Csa1G050580Cucurbita maxima (Rimu)cmacuB397
Csa1G050580Cucurbita moschata (Rifu)cmocuB061
Csa1G050580Cucurbita moschata (Rifu)cmocuB098
Csa1G050580Cucurbita moschata (Rifu)cmocuB189
Csa1G050580Cucurbita moschata (Rifu)cmocuB380
Csa1G050580Melon (DHL92) v3.5.1cumeB027
Csa1G050580Melon (DHL92) v3.5.1cumeB051
Csa1G050580Watermelon (Charleston Gray)cuwcgB035
Csa1G050580Watermelon (Charleston Gray)cuwcgB075
Csa1G050580Watermelon (97103) v1cuwmB008
Csa1G050580Watermelon (97103) v1cuwmB088