CsGy1G009680 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 5992111 .. 5992520 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAAGTAATCCGAACAGAACCGGCGCCCAGTCCAACATTGCTTCGCTTCGGTTCCGGCTCCGATGCCGGCGACGATGAGTTTAATAAGGTTAAAGAAGGAGGTGGGTGGTTTATAATTTTGCATCGTATTTATAGAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

mRNA sequence

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAATCCAACATTGCTTCGCTTCGGTTCCGGCTCCGATGCCGGCGACGATGAGTTTAATAAGGTTAAAGAAGGAGGTGGGTGGTTTATAATTTTGCATCGTATTTATAGAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

Coding sequence (CDS)

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAATCCAACATTGCTTCGCTTCGGTTCCGGCTCCGATGCCGGCGACGATGAGTTTAATAAGGTTAAAGAAGGAGGTGGGTGGTTTATAATTTTGCATCGTATTTATAGAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

Protein sequence

MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKISTAVALSLC

Homology

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BLAST of CsGy1G009680 vs. NCBI nr
Match: KGN64419.1 (hypothetical protein Csa_1G050580 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 8.0e-57
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL 60
           MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL
Sbjct: 1   MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL 60

Query: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120
           EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST
Sbjct: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120

Query: 121 AVALSLC 128
           AVALSLC
Sbjct: 121 AVALSLC 127

[Close]

BLAST of CsGy1G009680 vs. TrEMBL
Match: tr|A0A0A0LTW0|A0A0A0LTW0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.3e-57
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL 60
           MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL
Sbjct: 1   MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL 60

Query: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120
           EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST
Sbjct: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120

Query: 121 AVALSLC 128
           AVALSLC
Sbjct: 121 AVALSLC 127

The following BLAST results are available for this feature:

BLAST of CsGy1G009680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64419.1	8.0e-57	100.00	hypothetical protein Csa_1G050580 [Cucumis sativus]	[more]

BLAST of CsGy1G009680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G009680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G009680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTW0\|A0A0A0LTW0_CUCSA	5.3e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009680.1	CsGy1G009680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G009680	Csa1G050580	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G009680	CSPI01G09640	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G009680	CsaV3_1G009740	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G009680	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G009680	Cucurbita maxima (Rimu)	cgybcmaB025
CsGy1G009680	Cucurbita maxima (Rimu)	cgybcmaB049
CsGy1G009680	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G009680	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G009680	Cucurbita moschata (Rifu)	cgybcmoB026
CsGy1G009680	Cucurbita moschata (Rifu)	cgybcmoB046
CsGy1G009680	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G009680	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G009680	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G009680	Cucurbita pepo (Zucchini)	cgybcpeB049
CsGy1G009680	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G009680	Cucurbita pepo (Zucchini)	cgybcpeB123
CsGy1G009680	Cucumber (Chinese Long) v2	cgybcuB014
CsGy1G009680	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G009680	Bottle gourd (USVL1VR-Ls)	cgyblsiB064
CsGy1G009680	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G009680	Melon (DHL92) v3.5.1	cgybmeB046
CsGy1G009680	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G009680	Melon (DHL92) v3.6.1	cgybmedB041
CsGy1G009680	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G009680	Watermelon (Charleston Gray)	cgybwcgB069
CsGy1G009680	Watermelon (97103) v1	cgybwmB010
CsGy1G009680	Watermelon (97103) v1	cgybwmB087
CsGy1G009680	Wild cucumber (PI 183967)	cgybcpiB013
CsGy1G009680	Silver-seed gourd	carcgybB0373
CsGy1G009680	Silver-seed gourd	carcgybB0500
CsGy1G009680	Silver-seed gourd	carcgybB0989
CsGy1G009680	Cucumber (Chinese Long) v3	cgybcucB010
CsGy1G009680	Watermelon (97103) v2	cgybwmbB032
CsGy1G009680	Watermelon (97103) v2	cgybwmbB070
CsGy1G009680	Wax gourd	cgybwgoB029