CmaCh13G008120 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G008120
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr13 : 6859704 .. 6860083 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCGACAGCCAAAATGAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCCACCATGCGAGCATTTCCGGGCAGCTGGAAGAGCAGTCCCGGGGAGAGGAGGATGAAGAGCAGTAACCCGAACAGAACCGGCGCCCAGTCCAACATTGAGTCTCCGGCAGCGGCGGGGCATACAAGGAGTTGGAGAAGGAGGTGGTGGTGGTGGTGGTGGTTCAGTTGTGATAGTTTGGGGTTCTATTTATAGAGCTCCTGTTGGGATTTGGGTTGCGTTTAATTTGCACCGTCGTGACTCTGTTAAATCGACTAATTTTGGGTGTAATTTTTGGCATTAG

mRNA sequence

ATGGATGTCGACAGCCAAAATGAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCCACCATGCGAGCATTTCCGGGCAGCTGGAAGAGCAGTCCCGGGGAGAGGAGGATGAAGAGCAAGCTCCTGTTGGGATTTGGGTTGCGTTTAATTTGCACCGTCGTGACTCTGTTAAATCGACTAATTTTGGGTGTAATTTTTGGCATTAG

Coding sequence (CDS)

ATGGATGTCGACAGCCAAAATGAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCCACCATGCGAGCATTTCCGGGCAGCTGGAAGAGCAGTCCCGGGGAGAGGAGGATGAAGAGCAAGCTCCTGTTGGGATTTGGGTTGCGTTTAATTTGCACCGTCGTGACTCTGTTAAATCGACTAATTTTGGGTGTAATTTTTGGCATTAG

Protein sequence

MDVDSQNENGEDAEEEDGMDDNGLAVSGEASEFHHASISGQLEEQSRGEEDEEQAPVGIWVAFNLHRRDSVKSTNFGCNFWH
Homology
[Close]
BLAST of CmaCh13G008120 vs. TrEMBL
Match: A0A0A0LTW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050580 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.8e-11
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 1  MDVDSQNENGEDAEEEDGMDDNGLAVSGEASEFHHASISGQLEEQSRGEEDEE 54
          M++D QNENGED E+E+GMD+NGLAVSGEASEF+H  ISGQLE+Q+R EE+EE
Sbjct: 19 MNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEE 71

[Close]
BLAST of CmaCh13G008120 vs. NCBI nr
Match: gi|700209323|gb|KGN64419.1| (hypothetical protein Csa_1G050580 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 8.3e-11
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 1  MDVDSQNENGEDAEEEDGMDDNGLAVSGEASEFHHASISGQLEEQSRGEEDEE 54
          M++D QNENGED E+E+GMD+NGLAVSGEASEF+H  ISGQLE+Q+R EE+EE
Sbjct: 19 MNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEE 71

The following BLAST results are available for this feature:
BLAST of CmaCh13G008120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh13G008120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTW0_CUCSA5.8e-1173.58Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050580 PE=4 SV=1[more]
BLAST of CmaCh13G008120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh13G008120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209323|gb|KGN64419.1|8.3e-1173.58hypothetical protein Csa_1G050580 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G008120.1CmaCh13G008120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G008120Csa1G050580Cucumber (Chinese Long) v2cmacuB204
CmaCh13G008120CSPI01G09640Wild cucumber (PI 183967)cmacpiB206
CmaCh13G008120CsaV3_1G009740Cucumber (Chinese Long) v3cmacucB0235
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G008120Cucumber (Gy14) v1cgycmaB1083
CmaCh13G008120Cucurbita moschata (Rifu)cmacmoB212
CmaCh13G008120Cucurbita moschata (Rifu)cmacmoB216
CmaCh13G008120Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G008120Cucurbita moschata (Rifu)cmacmoB219
CmaCh13G008120Wild cucumber (PI 183967)cmacpiB227
CmaCh13G008120Cucumber (Chinese Long) v2cmacuB225
CmaCh13G008120Melon (DHL92) v3.5.1cmameB197
CmaCh13G008120Melon (DHL92) v3.5.1cmameB208
CmaCh13G008120Watermelon (Charleston Gray)cmawcgB209
CmaCh13G008120Watermelon (Charleston Gray)cmawcgB196
CmaCh13G008120Watermelon (97103) v1cmawmB187
CmaCh13G008120Watermelon (97103) v1cmawmB215
CmaCh13G008120Cucurbita pepo (Zucchini)cmacpeB214
CmaCh13G008120Cucurbita pepo (Zucchini)cmacpeB227
CmaCh13G008120Cucurbita pepo (Zucchini)cmacpeB234
CmaCh13G008120Cucurbita pepo (Zucchini)cmacpeB247
CmaCh13G008120Bottle gourd (USVL1VR-Ls)cmalsiB202
CmaCh13G008120Bottle gourd (USVL1VR-Ls)cmalsiB219
CmaCh13G008120Cucumber (Gy14) v2cgybcmaB063
CmaCh13G008120Cucumber (Gy14) v2cgybcmaB081
CmaCh13G008120Melon (DHL92) v3.6.1cmamedB218
CmaCh13G008120Melon (DHL92) v3.6.1cmamedB228
CmaCh13G008120Silver-seed gourdcarcmaB0515
CmaCh13G008120Silver-seed gourdcarcmaB0689
CmaCh13G008120Silver-seed gourdcarcmaB1393
CmaCh13G008120Cucumber (Chinese Long) v3cmacucB0256
CmaCh13G008120Watermelon (97103) v2cmawmbB227
CmaCh13G008120Watermelon (97103) v2cmawmbB241
CmaCh13G008120Wax gourdcmawgoB0256
CmaCh13G008120Cucurbita maxima (Rimu)cmacmaB092
CmaCh13G008120Cucurbita maxima (Rimu)cmacmaB128
CmaCh13G008120Cucurbita maxima (Rimu)cmacmaB218
CmaCh13G008120Cucumber (Gy14) v1cgycmaB0435