Csa1G050350 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G050350
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5868963 .. 5869241 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGTTTCAAAGGTATAGTACCAGTAATTACTTCTTGTTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCGATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCGTAAAGTATTATTCCCCCGATGTCAAACTTACATAG

mRNA sequence

ATGAGTTTGTTTCAAAGGTATAGTACCAGTAATTACTTCTTGTTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCGATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCGTAAAGTATTATTCCCCCGATGTCAAACTTACATAG

Coding sequence (CDS)

ATGAGTTTGTTTCAAAGGTATAGTACCAGTAATTACTTCTTGTTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCGATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCGTAAAGTATTATTCCCCCGATGTCAAACTTACATAG

Protein sequence

MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSDAINHGFLEKPIETSEPALHLTVKYYSPDVKLT*
Homology
[Close]
BLAST of Csa1G050350 vs. TrEMBL
Match: A0A0A0LWM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050350 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 7.0e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60
          MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD
Sbjct: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60

Query: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 93
          AINHGFLEKPIETSEPALHLTVKYYSPDVKLT
Sbjct: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 92

[Close]
BLAST of Csa1G050350 vs. NCBI nr
Match: gi|700209300|gb|KGN64396.1| (hypothetical protein Csa_1G050350 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60
          MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD
Sbjct: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60

Query: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 93
          AINHGFLEKPIETSEPALHLTVKYYSPDVKLT
Sbjct: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 92

The following BLAST results are available for this feature:
BLAST of Csa1G050350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWM1_CUCSA7.0e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050350 PE=4 SV=1[more]
BLAST of Csa1G050350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209300|gb|KGN64396.1|1.0e-44100.00hypothetical protein Csa_1G050350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G050350.1Csa1G050350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G050350CSPI01G09400Wild cucumber (PI 183967)cpicuB000
Csa1G050350CsGy1G009450Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G050350Cucurbita moschata (Rifu)cmocuB098
Csa1G050350Cucurbita moschata (Rifu)cmocuB189
Csa1G050350Cucurbita moschata (Rifu)cmocuB380
Csa1G050350Melon (DHL92) v3.5.1cumeB027
Csa1G050350Melon (DHL92) v3.5.1cumeB051
Csa1G050350Watermelon (Charleston Gray)cuwcgB035
Csa1G050350Watermelon (Charleston Gray)cuwcgB075
Csa1G050350Watermelon (Charleston Gray)cuwcgB089
Csa1G050350Watermelon (97103) v1cuwmB008
Csa1G050350Watermelon (97103) v1cuwmB088
Csa1G050350Cucurbita pepo (Zucchini)cpecuB029
Csa1G050350Cucurbita pepo (Zucchini)cpecuB359
Csa1G050350Cucurbita pepo (Zucchini)cpecuB515
Csa1G050350Cucurbita pepo (Zucchini)cpecuB648
Csa1G050350Bottle gourd (USVL1VR-Ls)culsiB067
Csa1G050350Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G050350Cucumber (Gy14) v2cgybcuB012
Csa1G050350Melon (DHL92) v3.6.1cumedB022
Csa1G050350Melon (DHL92) v3.6.1cumedB043
Csa1G050350Silver-seed gourdcarcuB0393
Csa1G050350Silver-seed gourdcarcuB0523
Csa1G050350Silver-seed gourdcarcuB1017
Csa1G050350Watermelon (97103) v2cuwmbB032
Csa1G050350Watermelon (97103) v2cuwmbB076
Csa1G050350Wax gourdcuwgoB032
Csa1G050350Cucumber (Chinese Long) v2cucuB002
Csa1G050350Cucumber (Gy14) v1cgycuB225
Csa1G050350Cucumber (Gy14) v1cgycuB547
Csa1G050350Cucurbita maxima (Rimu)cmacuB071
Csa1G050350Cucurbita maxima (Rimu)cmacuB112
Csa1G050350Cucurbita maxima (Rimu)cmacuB204
Csa1G050350Cucurbita maxima (Rimu)cmacuB390
Csa1G050350Cucurbita moschata (Rifu)cmocuB061