Csa1G050350.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G050350.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5868963 .. 5869241 (+)
Sequence length279
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGTTTCAAAGGTATAGTACCAGTAATTACTTCTTGTTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCGATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCGTAAAGTATTATTCCCCCGATGTCAAACTTACATAG

mRNA sequence

ATGAGTTTGTTTCAAAGGTATAGTACCAGTAATTACTTCTTGTTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCGATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCGTAAAGTATTATTCCCCCGATGTCAAACTTACATAG

Coding sequence (CDS)

ATGAGTTTGTTTCAAAGGTATAGTACCAGTAATTACTTCTTGTTTCTAACATCTTTCCATGATGTTGAATATGTACAACATGGGATTGACGAGAAGCCTGGTGAGTCTGTAGAAGCAGCAATGTTGGTAACAATTTTACTTGATCTATGCCGTATCTTCCTTGCCCTGCCAAAAAGCGATGCTATCAACCATGGTTTCTTGGAAAAACCAATTGAAACTTCAGAACCTGCATTGCATCTTACCGTAAAGTATTATTCCCCCGATGTCAAACTTACATAG

Protein sequence

MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSDAINHGFLEKPIETSEPALHLTVKYYSPDVKLT*
Homology
[Close]
BLAST of Csa1G050350.1 vs. TrEMBL
Match: A0A0A0LWM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050350 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 7.0e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60
          MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD
Sbjct: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60

Query: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 93
          AINHGFLEKPIETSEPALHLTVKYYSPDVKLT
Sbjct: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 92

[Close]
BLAST of Csa1G050350.1 vs. NCBI nr
Match: gi|700209300|gb|KGN64396.1| (hypothetical protein Csa_1G050350 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60
          MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD
Sbjct: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60

Query: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 93
          AINHGFLEKPIETSEPALHLTVKYYSPDVKLT
Sbjct: 61 AINHGFLEKPIETSEPALHLTVKYYSPDVKLT 92

The following BLAST results are available for this feature:
BLAST of Csa1G050350.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWM1_CUCSA7.0e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050350 PE=4 SV=1[more]
BLAST of Csa1G050350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209300|gb|KGN64396.1|1.0e-44100.00hypothetical protein Csa_1G050350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G050350Csa1G050350gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G050350.1Csa1G050350.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G050350.1.cds1Csa1G050350.1.cds1CDS