Csa1G046070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G046070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5290503 .. 5290715 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

mRNA sequence

ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

Coding sequence (CDS)

ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

Protein sequence

MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEEEEEEEGIRQL*
Homology
[Close]
BLAST of Csa1G046070 vs. TrEMBL
Match: A0A0A0LTH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046070 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.5e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60
          MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE
Sbjct: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60

Query: 61 EEEEEGIRQL 71
          EEEEEGIRQL
Sbjct: 61 EEEEEGIRQL 70

[Close]
BLAST of Csa1G046070 vs. NCBI nr
Match: gi|700209213|gb|KGN64309.1| (hypothetical protein Csa_1G046070 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60
          MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE
Sbjct: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60

Query: 61 EEEEEGIRQL 71
          EEEEEGIRQL
Sbjct: 61 EEEEEGIRQL 70

The following BLAST results are available for this feature:
BLAST of Csa1G046070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTH8_CUCSA7.5e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046070 PE=4 SV=1[more]
BLAST of Csa1G046070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209213|gb|KGN64309.1|1.1e-30100.00hypothetical protein Csa_1G046070 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G046070.1Csa1G046070.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 30..50
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G046070CSPI01G08480Wild cucumber (PI 183967)cpicuB000
Csa1G046070CsGy1G008370Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G046070Wax gourdcuwgoB002
Csa1G046070Wax gourdcuwgoB030
Csa1G046070Cucumber (Chinese Long) v2cucuB001
Csa1G046070Cucumber (Gy14) v1cgycuB106
Csa1G046070Cucumber (Gy14) v1cgycuB301
Csa1G046070Cucurbita maxima (Rimu)cmacuB066
Csa1G046070Cucurbita maxima (Rimu)cmacuB107
Csa1G046070Cucurbita maxima (Rimu)cmacuB217
Csa1G046070Cucurbita maxima (Rimu)cmacuB233
Csa1G046070Cucurbita maxima (Rimu)cmacuB390
Csa1G046070Cucurbita moschata (Rifu)cmocuB057
Csa1G046070Cucurbita moschata (Rifu)cmocuB093
Csa1G046070Cucurbita moschata (Rifu)cmocuB202
Csa1G046070Cucurbita moschata (Rifu)cmocuB219
Csa1G046070Cucurbita moschata (Rifu)cmocuB380
Csa1G046070Melon (DHL92) v3.5.1cumeB005
Csa1G046070Melon (DHL92) v3.5.1cumeB027
Csa1G046070Melon (DHL92) v3.5.1cumeB046
Csa1G046070Melon (DHL92) v3.5.1cumeB067
Csa1G046070Watermelon (Charleston Gray)cuwcgB001
Csa1G046070Watermelon (Charleston Gray)cuwcgB013
Csa1G046070Watermelon (Charleston Gray)cuwcgB073
Csa1G046070Watermelon (Charleston Gray)cuwcgB089
Csa1G046070Watermelon (97103) v1cuwmB006
Csa1G046070Watermelon (97103) v1cuwmB000
Csa1G046070Watermelon (97103) v1cuwmB041
Csa1G046070Watermelon (97103) v1cuwmB086
Csa1G046070Cucurbita pepo (Zucchini)cpecuB029
Csa1G046070Cucurbita pepo (Zucchini)cpecuB358
Csa1G046070Cucurbita pepo (Zucchini)cpecuB505
Csa1G046070Cucurbita pepo (Zucchini)cpecuB595
Csa1G046070Cucurbita pepo (Zucchini)cpecuB642
Csa1G046070Bottle gourd (USVL1VR-Ls)culsiB085
Csa1G046070Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G046070Bottle gourd (USVL1VR-Ls)culsiB028
Csa1G046070Bottle gourd (USVL1VR-Ls)culsiB064
Csa1G046070Cucumber (Gy14) v2cgybcuB010
Csa1G046070Melon (DHL92) v3.6.1cumedB022
Csa1G046070Melon (DHL92) v3.6.1cumedB000
Csa1G046070Melon (DHL92) v3.6.1cumedB039
Csa1G046070Melon (DHL92) v3.6.1cumedB062
Csa1G046070Silver-seed gourdcarcuB0285
Csa1G046070Silver-seed gourdcarcuB0392
Csa1G046070Silver-seed gourdcarcuB0523
Csa1G046070Silver-seed gourdcarcuB1019
Csa1G046070Watermelon (97103) v2cuwmbB001
Csa1G046070Watermelon (97103) v2cuwmbB017
Csa1G046070Watermelon (97103) v2cuwmbB072
Csa1G046070Watermelon (97103) v2cuwmbB087
Csa1G046070Watermelon (97103) v2cuwmbB088