CsGy1G008370 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G008370
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr1 : 5280923 .. 5281135 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

mRNA sequence

ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

Coding sequence (CDS)

ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

Protein sequence

MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEEEEEEEGIRQL
Homology
[Close]
BLAST of CsGy1G008370 vs. NCBI nr
Match: KGN64309.1 (hypothetical protein Csa_1G046070 [Cucumis sativus])

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 1  MTANRKSVKRKKLKNQEREMGTSYEKR 28
          MTANRKSVKRKKLKNQEREMGTSYEKR
Sbjct: 1  MTANRKSVKRKKLKNQEREMGTSYEKR 27

[Close]
BLAST of CsGy1G008370 vs. TrEMBL
Match: tr|A0A0A0LTH8|A0A0A0LTH8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046070 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-04
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 1  MTANRKSVKRKKLKNQEREMGTSYEKR 28
          MTANRKSVKRKKLKNQEREMGTSYEKR
Sbjct: 1  MTANRKSVKRKKLKNQEREMGTSYEKR 27

The following BLAST results are available for this feature:
BLAST of CsGy1G008370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64309.19.6e-04100.00hypothetical protein Csa_1G046070 [Cucumis sativus][more]
BLAST of CsGy1G008370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G008370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G008370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTH8|A0A0A0LTH8_CUCSA6.3e-04100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G008370.1CsGy1G008370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 30..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G008370Csa1G046070Cucumber (Chinese Long) v2cgybcuB001
CsGy1G008370CSPI01G08480Wild cucumber (PI 183967)cgybcpiB001
CsGy1G008370CsaV3_1G008480Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G008370Cucumber (Chinese Long) v3cgybcucB008
CsGy1G008370Cucumber (Chinese Long) v3cgybcucB025
CsGy1G008370Cucumber (Chinese Long) v3cgybcucB042
CsGy1G008370Cucumber (Chinese Long) v3cgybcucB044
CsGy1G008370Watermelon (97103) v2cgybwmbB001
CsGy1G008370Watermelon (97103) v2cgybwmbB018
CsGy1G008370Watermelon (97103) v2cgybwmbB055
CsGy1G008370Watermelon (97103) v2cgybwmbB068
CsGy1G008370Watermelon (97103) v2cgybwmbB084
CsGy1G008370Watermelon (97103) v2cgybwmbB085
CsGy1G008370Wax gourdcgybwgoB002
CsGy1G008370Wax gourdcgybwgoB027
CsGy1G008370Wax gourdcgybwgoB065
CsGy1G008370Cucumber (Gy14) v2cgybcgybB004
CsGy1G008370Cucumber (Gy14) v2cgybcgybB031
CsGy1G008370Cucumber (Gy14) v2cgybcgybB034
CsGy1G008370Cucurbita maxima (Rimu)cgybcmaB021
CsGy1G008370Cucurbita maxima (Rimu)cgybcmaB048
CsGy1G008370Cucurbita maxima (Rimu)cgybcmaB073
CsGy1G008370Cucurbita maxima (Rimu)cgybcmaB085
CsGy1G008370Cucurbita maxima (Rimu)cgybcmaB102
CsGy1G008370Cucurbita maxima (Rimu)cgybcmaB132
CsGy1G008370Cucurbita moschata (Rifu)cgybcmoB021
CsGy1G008370Cucurbita moschata (Rifu)cgybcmoB042
CsGy1G008370Cucurbita moschata (Rifu)cgybcmoB067
CsGy1G008370Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G008370Cucurbita moschata (Rifu)cgybcmoB122
CsGy1G008370Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G008370Cucurbita pepo (Zucchini)cgybcpeB064
CsGy1G008370Cucurbita pepo (Zucchini)cgybcpeB069
CsGy1G008370Cucurbita pepo (Zucchini)cgybcpeB105
CsGy1G008370Cucumber (Chinese Long) v2cgybcuB011
CsGy1G008370Cucumber (Chinese Long) v2cgybcuB038
CsGy1G008370Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G008370Bottle gourd (USVL1VR-Ls)cgyblsiB047
CsGy1G008370Bottle gourd (USVL1VR-Ls)cgyblsiB062
CsGy1G008370Melon (DHL92) v3.5.1cgybmeB001
CsGy1G008370Melon (DHL92) v3.5.1cgybmeB003
CsGy1G008370Melon (DHL92) v3.5.1cgybmeB022
CsGy1G008370Melon (DHL92) v3.5.1cgybmeB043
CsGy1G008370Melon (DHL92) v3.5.1cgybmeB062
CsGy1G008370Melon (DHL92) v3.6.1cgybmedB003
CsGy1G008370Melon (DHL92) v3.6.1cgybmedB001
CsGy1G008370Melon (DHL92) v3.6.1cgybmedB020
CsGy1G008370Melon (DHL92) v3.6.1cgybmedB037
CsGy1G008370Melon (DHL92) v3.6.1cgybmedB056
CsGy1G008370Watermelon (Charleston Gray)cgybwcgB006
CsGy1G008370Watermelon (Charleston Gray)cgybwcgB012
CsGy1G008370Watermelon (Charleston Gray)cgybwcgB056
CsGy1G008370Watermelon (Charleston Gray)cgybwcgB068
CsGy1G008370Watermelon (Charleston Gray)cgybwcgB088
CsGy1G008370Watermelon (97103) v1cgybwmB001
CsGy1G008370Watermelon (97103) v1cgybwmB008
CsGy1G008370Watermelon (97103) v1cgybwmB035
CsGy1G008370Watermelon (97103) v1cgybwmB042
CsGy1G008370Watermelon (97103) v1cgybwmB084
CsGy1G008370Wild cucumber (PI 183967)cgybcpiB010
CsGy1G008370Wild cucumber (PI 183967)cgybcpiB036
CsGy1G008370Silver-seed gourdcarcgybB0372
CsGy1G008370Silver-seed gourdcarcgybB0500
CsGy1G008370Silver-seed gourdcarcgybB0620
CsGy1G008370Silver-seed gourdcarcgybB0991