Csa1G046070.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G046070.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 5290503 .. 5290715 (+)
Sequence length	213

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

mRNA sequence

ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

Coding sequence (CDS)

ATGACCGCCAATCGGAAGTCGGTGAAGAGAAAGAAACTTAAGAATCAAGAAAGGGAAATGGGTACGTCGTATGAAAAGAGGATGATGAATTCGAATGCAATAAGAAGAAGAAAGAAGTGGGAGGATAAGAAGAAGAAGAAGAAGAAGAATAAGAAGGTATTGTTACTTGGAGAAGAGGAAGAAGAAGAAGAAGAGGGAATTCGTCAGTTATAA

Protein sequence

MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEEEEEEEGIRQL*

Homology

[Close]

BLAST of Csa1G046070.1 vs. TrEMBL
Match: A0A0A0LTH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046070 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.5e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60
          MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE
Sbjct: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60

Query: 61 EEEEEGIRQL 71
          EEEEEGIRQL
Sbjct: 61 EEEEEGIRQL 70

[Close]

BLAST of Csa1G046070.1 vs. NCBI nr
Match: gi|700209213|gb|KGN64309.1| (hypothetical protein Csa_1G046070 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60
          MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE
Sbjct: 1  MTANRKSVKRKKLKNQEREMGTSYEKRMMNSNAIRRRKKWEDKKKKKKKNKKVLLLGEEE 60

Query: 61 EEEEEGIRQL 71
          EEEEEGIRQL
Sbjct: 61 EEEEEGIRQL 70

The following BLAST results are available for this feature:

BLAST of Csa1G046070.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTH8_CUCSA	7.5e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046070 PE=4 SV=1	[more]

BLAST of Csa1G046070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209213\|gb\|KGN64309.1\|	1.1e-30	100.00	hypothetical protein Csa_1G046070 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G046070	Csa1G046070	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G046070.1	Csa1G046070.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G046070.1.cds1	Csa1G046070.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 30..50 scor