Csa1G042470 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G042470
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 4332757 .. 4333165 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGACGTCAAAATGAGAGCTTTAGTAAAGACTGAATACACATAAGTATTTCTAAACTTTCACCTTTCGTTCAACTCCAATACTCTAATACCATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAG

mRNA sequence

ATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAG

Coding sequence (CDS)

ATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAG

Protein sequence

MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSFKCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP*

Homology

[Close]

BLAST of Csa1G042470 vs. TrEMBL
Match: A0A0A0LQE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042470 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF
Sbjct: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 106
           KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP
Sbjct: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 105

[Close]

BLAST of Csa1G042470 vs. TrEMBL
Match: A0A0A0LQ35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404850 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 32 LALILLILLFSAPVNSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSES 91
          L L + +LL S   +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E 
Sbjct: 10 LFLFITLLLTSPASSSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEP 69

Query: 92 MKLTCD 96
          MKL CD
Sbjct: 70 MKLNCD 73

[Close]

BLAST of Csa1G042470 vs. NCBI nr
Match: gi|700209039|gb|KGN64135.1| (hypothetical protein Csa_1G042470 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 4.9e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF
Sbjct: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 106
           KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP
Sbjct: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 105

[Close]

BLAST of Csa1G042470 vs. NCBI nr
Match: gi|659066768|ref|XP_008460391.1| (PREDICTED: uncharacterized protein LOC103499200 isoform X1 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 1


Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQ+PYFCSSKL  RSFPFLLSQL LAL+LLILL SAP NS+V+DEWFFNCNS 
Sbjct: 25  MSSSPKLFQDPYFCSSKLDSRSFPFLLSQLSLALLLLILLNSAPANSAVHDEWFFNCNSS 84

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVK 105
           KC   +  E PFWRYNGTETC RVGY  +M L CDG+  +  +K
Sbjct: 85  KC---ILNELPFWRYNGTETCNRVGYDGTMALRCDGVLAIIEIK 125

[Close]

BLAST of Csa1G042470 vs. NCBI nr
Match: gi|659066772|ref|XP_008460514.1| (PREDICTED: uncharacterized protein LOC103499200 isoform X2 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 1


Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQ+PYFCSSKL  RSFPFLLSQL LAL+LLILL SAP NS+V+DEWFFNCNS 
Sbjct: 25  MSSSPKLFQDPYFCSSKLDSRSFPFLLSQLSLALLLLILLNSAPANSAVHDEWFFNCNSS 84

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVK 105
           KC   +  E PFWRYNGTETC RVGY  +M L CDG+  +  +K
Sbjct: 85  KC---ILNELPFWRYNGTETCNRVGYDGTMALRCDGVLAIIEIK 125

[Close]

BLAST of Csa1G042470 vs. NCBI nr
Match: gi|700208015|gb|KGN63134.1| (hypothetical protein Csa_2G404850 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 32 LALILLILLFSAPVNSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSES 91
          L L + +LL S   +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E 
Sbjct: 10 LFLFITLLLTSPASSSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEP 69

Query: 92 MKLTCD 96
          MKL CD
Sbjct: 70 MKLNCD 73

[Close]

BLAST of Csa1G042470 vs. NCBI nr
Match: gi|778673100|ref|XP_011649927.1| (PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X2 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 32 LALILLILLFSAPVNSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSES 91
          L L + +LL S   +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E 
Sbjct: 10 LFLFITLLLTSPASSSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEP 69

Query: 92 MKLTCD 96
          MKL CD
Sbjct: 70 MKLNCD 73

The following BLAST results are available for this feature:

BLAST of Csa1G042470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQE7_CUCSA	3.4e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042470 PE=4 SV=1	[more]
A0A0A0LQ35_CUCSA	3.5e-08	51.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404850 PE=4 SV=1	[more]

BLAST of Csa1G042470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209039\|gb\|KGN64135.1\|	4.9e-56	100.00	hypothetical protein Csa_1G042470 [Cucumis sativus]	[more]
gi\|659066768\|ref\|XP_008460391.1\|	2.4e-34	71.15	PREDICTED: uncharacterized protein LOC103499200 isoform X1 [Cucumis melo]	[more]
gi\|659066772\|ref\|XP_008460514.1\|	2.4e-34	71.15	PREDICTED: uncharacterized protein LOC103499200 isoform X2 [Cucumis melo]	[more]
gi\|700208015\|gb\|KGN63134.1\|	5.0e-08	51.52	hypothetical protein Csa_2G404850 [Cucumis sativus]	[more]
gi\|778673100\|ref\|XP_011649927.1\|	5.0e-08	51.52	PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X2 [Cucumi...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU178128	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G042470.1	Csa1G042470.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU178128	CU178128	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G042470	Lsi02G001930	Bottle gourd (USVL1VR-Ls)	culsiB022

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G042470	Watermelon (97103) v2	cuwmbB054
Csa1G042470	Watermelon (97103) v2	cuwmbB080
Csa1G042470	Wax gourd	cuwgoB014
Csa1G042470	Wax gourd	cuwgoB028
Csa1G042470	Cucumber (Chinese Long) v2	cucuB031
Csa1G042470	Cucumber (Chinese Long) v2	cucuB000
Csa1G042470	Cucumber (Gy14) v1	cgycuB139
Csa1G042470	Cucumber (Gy14) v1	cgycuB159
Csa1G042470	Cucumber (Gy14) v1	cgycuB406
Csa1G042470	Cucurbita maxima (Rimu)	cmacuB056
Csa1G042470	Cucurbita maxima (Rimu)	cmacuB088
Csa1G042470	Cucurbita maxima (Rimu)	cmacuB217
Csa1G042470	Cucurbita maxima (Rimu)	cmacuB406
Csa1G042470	Cucurbita maxima (Rimu)	cmacuB390
Csa1G042470	Cucurbita moschata (Rifu)	cmocuB046
Csa1G042470	Cucurbita moschata (Rifu)	cmocuB077
Csa1G042470	Cucurbita moschata (Rifu)	cmocuB202
Csa1G042470	Cucurbita moschata (Rifu)	cmocuB380
Csa1G042470	Cucurbita moschata (Rifu)	cmocuB395
Csa1G042470	Melon (DHL92) v3.5.1	cumeB011
Csa1G042470	Melon (DHL92) v3.5.1	cumeB027
Csa1G042470	Melon (DHL92) v3.5.1	cumeB056
Csa1G042470	Watermelon (Charleston Gray)	cuwcgB057
Csa1G042470	Watermelon (Charleston Gray)	cuwcgB064
Csa1G042470	Watermelon (Charleston Gray)	cuwcgB083
Csa1G042470	Watermelon (97103) v1	cuwmB040
Csa1G042470	Watermelon (97103) v1	cuwmB062
Csa1G042470	Watermelon (97103) v1	cuwmB096
Csa1G042470	Cucurbita pepo (Zucchini)	cpecuB028
Csa1G042470	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G042470	Cucurbita pepo (Zucchini)	cpecuB369
Csa1G042470	Cucurbita pepo (Zucchini)	cpecuB505
Csa1G042470	Cucurbita pepo (Zucchini)	cpecuB655
Csa1G042470	Bottle gourd (USVL1VR-Ls)	culsiB072
Csa1G042470	Cucumber (Gy14) v2	cgybcuB001
Csa1G042470	Cucumber (Gy14) v2	cgybcuB004
Csa1G042470	Cucumber (Gy14) v2	cgybcuB199
Csa1G042470	Melon (DHL92) v3.6.1	cumedB022
Csa1G042470	Melon (DHL92) v3.6.1	cumedB006
Csa1G042470	Melon (DHL92) v3.6.1	cumedB048
Csa1G042470	Silver-seed gourd	carcuB0415
Csa1G042470	Silver-seed gourd	carcuB0542
Csa1G042470	Silver-seed gourd	carcuB0623
Csa1G042470	Silver-seed gourd	carcuB0802