Csa1G042470.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G042470.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4332757 .. 4333165 (-)
Sequence length318
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGACGTCAAAATGAGAGCTTTAGTAAAGACTGAATACACATAAGTATTTCTAAACTTTCACCTTTCGTTCAACTCCAATACTCTAATACCATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAG

mRNA sequence

ATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAG

Coding sequence (CDS)

ATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTATTCCGAGTCAATGAAGCTTACATGTGATGGCTTACATGTGATGGAGACCGTGAAACCATAG

Protein sequence

MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSFKCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP*
Homology
[Close]
BLAST of Csa1G042470.1 vs. TrEMBL
Match: A0A0A0LQE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042470 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF
Sbjct: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 106
           KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP
Sbjct: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 105

[Close]
BLAST of Csa1G042470.1 vs. TrEMBL
Match: A0A0A0LQ35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404850 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1 

Query: 32 LALILLILLFSAPVNSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSES 91
          L L + +LL S   +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E 
Sbjct: 10 LFLFITLLLTSPASSSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEP 69

Query: 92 MKLTCD 96
          MKL CD
Sbjct: 70 MKLNCD 73

[Close]
BLAST of Csa1G042470.1 vs. NCBI nr
Match: gi|700209039|gb|KGN64135.1| (hypothetical protein Csa_1G042470 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 4.9e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF
Sbjct: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 106
           KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP
Sbjct: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVKP 105

[Close]
BLAST of Csa1G042470.1 vs. NCBI nr
Match: gi|659066768|ref|XP_008460391.1| (PREDICTED: uncharacterized protein LOC103499200 isoform X1 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 1 

Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQ+PYFCSSKL  RSFPFLLSQL LAL+LLILL SAP NS+V+DEWFFNCNS 
Sbjct: 25  MSSSPKLFQDPYFCSSKLDSRSFPFLLSQLSLALLLLILLNSAPANSAVHDEWFFNCNSS 84

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVK 105
           KC   +  E PFWRYNGTETC RVGY  +M L CDG+  +  +K
Sbjct: 85  KC---ILNELPFWRYNGTETCNRVGYDGTMALRCDGVLAIIEIK 125

[Close]
BLAST of Csa1G042470.1 vs. NCBI nr
Match: gi|659066772|ref|XP_008460514.1| (PREDICTED: uncharacterized protein LOC103499200 isoform X2 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 74/104 (71.15%), Postives = 83/104 (79.81%), Query Frame = 1 

Query: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60
           MSSSPKLFQ+PYFCSSKL  RSFPFLLSQL LAL+LLILL SAP NS+V+DEWFFNCNS 
Sbjct: 25  MSSSPKLFQDPYFCSSKLDSRSFPFLLSQLSLALLLLILLNSAPANSAVHDEWFFNCNSS 84

Query: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDGLHVMETVK 105
           KC   +  E PFWRYNGTETC RVGY  +M L CDG+  +  +K
Sbjct: 85  KC---ILNELPFWRYNGTETCNRVGYDGTMALRCDGVLAIIEIK 125

[Close]
BLAST of Csa1G042470.1 vs. NCBI nr
Match: gi|700208015|gb|KGN63134.1| (hypothetical protein Csa_2G404850 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1 

Query: 32 LALILLILLFSAPVNSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSES 91
          L L + +LL S   +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E 
Sbjct: 10 LFLFITLLLTSPASSSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEP 69

Query: 92 MKLTCD 96
          MKL CD
Sbjct: 70 MKLNCD 73

[Close]
BLAST of Csa1G042470.1 vs. NCBI nr
Match: gi|778673100|ref|XP_011649927.1| (PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X2 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1 

Query: 32 LALILLILLFSAPVNSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSES 91
          L L + +LL S   +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E 
Sbjct: 10 LFLFITLLLTSPASSSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEP 69

Query: 92 MKLTCD 96
          MKL CD
Sbjct: 70 MKLNCD 73

The following BLAST results are available for this feature:
BLAST of Csa1G042470.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQE7_CUCSA3.4e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042470 PE=4 SV=1[more]
A0A0A0LQ35_CUCSA3.5e-0851.52Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404850 PE=4 SV=1[more]
BLAST of Csa1G042470.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209039|gb|KGN64135.1|4.9e-56100.00hypothetical protein Csa_1G042470 [Cucumis sativus][more]
gi|659066768|ref|XP_008460391.1|2.4e-3471.15PREDICTED: uncharacterized protein LOC103499200 isoform X1 [Cucumis melo][more]
gi|659066772|ref|XP_008460514.1|2.4e-3471.15PREDICTED: uncharacterized protein LOC103499200 isoform X2 [Cucumis melo][more]
gi|700208015|gb|KGN63134.1|5.0e-0851.52hypothetical protein Csa_2G404850 [Cucumis sativus][more]
gi|778673100|ref|XP_011649927.1|5.0e-0851.52PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X2 [Cucumi... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G042470Csa1G042470gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G042470.1Csa1G042470.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G042470.1.cds1Csa1G042470.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G042470.1.utr5p1Csa1G042470.1.utr5p1five_prime_UTR