CU178128 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU178128
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4332756 .. 4333166 (-)
Sequence length396
The following sequences are available for this feature:

transcribed_cluster sequence

TCGACGTCAAAATGAGAGCTTTAGTAAAGACCGAATACACATAAGTATTTCTAAACTTTCACCTTTCGTTCAACTCCAATACTCTAATACCATGTCTTCCTCTCCTAAATTATTTCAAAACCCATATTTCTGTTCCTCAAAATTGAGTCCCAGATCCTTTCCATTTCTTCTTTCACAACTTTATTTGGCTCTTATACTGCTTATTCTGCTCTTTTCTGCTCCTGTTAATTCCTCTGTTTATGATGAATGGTTCTTCAACTGCAATTCCTTCAAATGCGACCCCTTTGTTACCAAGGAATTTCCTTTCTGGAGATACAACGGAACAGAAACTTGTTATCGTGTAGGTTACTCCGAGTCAATGAAGCTTACATGTGATGGAGACCGTGAAACCATAGA
BLAST of CU178128 vs. TrEMBL
Match: A0A0A0LQE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042470 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 77/96 (80.21%), Postives = 77/96 (80.21%), Query Frame = 2

Query: 92  MSSSPKLFQNPYFCSSKLSPRSFPXXXXXXXXXXXXXXXXXXXPVNSSVYDEWFFNCNSF 151
           MSSSPKLFQNPYFCSSKLSPRSFP                   PVNSSVYDEWFFNCNSF
Sbjct: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60

Query: 152 KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG 211
           KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG
Sbjct: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG 96

Query: 212 271
           
Sbjct: 121 96

Query: 272 331
           
Sbjct: 181 96

Query: 332 380
           
Sbjct: 241 96

BLAST of CU178128 vs. TrEMBL
Match: A0A0A0LQ35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404850 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 31/58 (53.45%), Postives = 35/58 (60.34%), Query Frame = 2

Query: 227 NSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSESMKLTCDGDRETI 286
           +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E MKL CD    TI
Sbjct: 24  SSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEPMKLNCDRSPVTI 79

Query: 287 346
           
Sbjct: 84  79

Query: 347 395
           
Sbjct: 144 79

BLAST of CU178128 vs. NCBI nr
Match: gi|700209039|gb|KGN64135.1| (hypothetical protein Csa_1G042470 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 77/96 (80.21%), Postives = 77/96 (80.21%), Query Frame = 2

Query: 92  MSSSPKLFQNPYFCSSKLSPRSFPXXXXXXXXXXXXXXXXXXXPVNSSVYDEWFFNCNSF 151
           MSSSPKLFQNPYFCSSKLSPRSFP                   PVNSSVYDEWFFNCNSF
Sbjct: 1   MSSSPKLFQNPYFCSSKLSPRSFPFLLSQLYLALILLILLFSAPVNSSVYDEWFFNCNSF 60

Query: 152 KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG 211
           KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG
Sbjct: 61  KCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG 96

Query: 212 271
           
Sbjct: 121 96

Query: 272 331
           
Sbjct: 181 96

Query: 332 380
           
Sbjct: 241 96

BLAST of CU178128 vs. NCBI nr
Match: gi|659066768|ref|XP_008460391.1| (PREDICTED: uncharacterized protein LOC103499200 isoform X1 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 69/110 (62.73%), Postives = 75/110 (68.18%), Query Frame = 2

Query: 50  SKLSPFVQLQYSNTMSSSPKLFQNPYFCSSKLSPRSFPXXXXXXXXXXXXXXXXXXXPVN 109
           SKLS F+QLQYSNTMSSSPKLFQ+PYFCSSKL  RSFP                   P N
Sbjct: 11  SKLSLFLQLQYSNTMSSSPKLFQDPYFCSSKLDSRSFPFLLSQLSLALLLLILLNSAPAN 70

Query: 110 SSVYDEWFFNCNSFKCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG 169
           S+V+DEWFFNCNS KC   +  E PFWRYNGTETC RVGY  +M L CDG
Sbjct: 71  SAVHDEWFFNCNSSKC---ILNELPFWRYNGTETCNRVGYDGTMALRCDG 117

Query: 170 229
           
Sbjct: 131 117

Query: 230 289
           
Sbjct: 191 117

Query: 290 349
           
Sbjct: 251 117

Query: 350 380
           
Sbjct: 311 117

BLAST of CU178128 vs. NCBI nr
Match: gi|659066772|ref|XP_008460514.1| (PREDICTED: uncharacterized protein LOC103499200 isoform X2 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 69/110 (62.73%), Postives = 75/110 (68.18%), Query Frame = 2

Query: 50  SKLSPFVQLQYSNTMSSSPKLFQNPYFCSSKLSPRSFPXXXXXXXXXXXXXXXXXXXPVN 109
           SKLS F+QLQYSNTMSSSPKLFQ+PYFCSSKL  RSFP                   P N
Sbjct: 11  SKLSLFLQLQYSNTMSSSPKLFQDPYFCSSKLDSRSFPFLLSQLSLALLLLILLNSAPAN 70

Query: 110 SSVYDEWFFNCNSFKCDPFVTKEFPFWRYNGTETCYRVGYSESMKLTCDG 169
           S+V+DEWFFNCNS KC   +  E PFWRYNGTETC RVGY  +M L CDG
Sbjct: 71  SAVHDEWFFNCNSSKC---ILNELPFWRYNGTETCNRVGYDGTMALRCDG 117

Query: 170 229
           
Sbjct: 131 117

Query: 230 289
           
Sbjct: 191 117

Query: 290 349
           
Sbjct: 251 117

Query: 350 380
           
Sbjct: 311 117

BLAST of CU178128 vs. NCBI nr
Match: gi|700208015|gb|KGN63134.1| (hypothetical protein Csa_2G404850 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 31/58 (53.45%), Postives = 35/58 (60.34%), Query Frame = 2

Query: 227 NSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSESMKLTCDGDRETI 286
           +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E MKL CD    TI
Sbjct: 24  SSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEPMKLNCDRSPVTI 79

Query: 287 346
           
Sbjct: 84  79

Query: 347 395
           
Sbjct: 144 79

BLAST of CU178128 vs. NCBI nr
Match: gi|778673100|ref|XP_011649927.1| (PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X2 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 31/58 (53.45%), Postives = 35/58 (60.34%), Query Frame = 2

Query: 227 NSSVYDEWFFNCN-SFKCDPFVTKEFP-FWRYNGTETCYRVGYSESMKLTCDGDRETI 286
           +SSVYD+WFFNC   F C   +   +P  WRYNGTE C   GY E MKL CD    TI
Sbjct: 24  SSSVYDQWFFNCQYPFNCGSILHNRYPLLWRYNGTEFC--GGYPEPMKLNCDRSPVTI 79

Query: 287 346
           
Sbjct: 84  79

Query: 347 395
           
Sbjct: 144 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LQE7_CUCSA1.1e-3880.21Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042470 PE=4 SV=1[more]
A0A0A0LQ35_CUCSA1.1e-0653.45Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404850 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700209039|gb|KGN64135.1|3.4e-3880.21hypothetical protein Csa_1G042470 [Cucumis sativus][more]
gi|659066768|ref|XP_008460391.1|2.6e-3062.73PREDICTED: uncharacterized protein LOC103499200 isoform X1 [Cucumis melo][more]
gi|659066772|ref|XP_008460514.1|2.6e-3062.73PREDICTED: uncharacterized protein LOC103499200 isoform X2 [Cucumis melo][more]
gi|700208015|gb|KGN63134.1|1.2e-0653.45hypothetical protein Csa_2G404850 [Cucumis sativus][more]
gi|778673100|ref|XP_011649927.1|1.2e-0653.45PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X2 [Cucumi... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G042470Csa1G042470gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
csa01-3ms3-c08csa01-3ms3-c08EST