Csa1G042310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G042310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNADH-ubiquinone oxidoreductase 12 kDa subunit; contains IPR019377 (NADH-ubiquinone oxidoreductase, subunit 10)
LocationChr1 : 4238895 .. 4240032 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGAAAGCGATTCTTAGACTGAGAGCAAGAACAGCACAAGGAAGAGAAGAGAAAGGGGAAAAGCTATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCTCCGCCGGACGATTTCGATCCGGAGAATCCGTATAAGGATCCAGTGGCGATGTTAGAGATGAGGGAATACATTGTAAGAGAGAAGTGGATCGATATTGAAAAGGCCAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATCGAAGGAGTCAACCATCTGCAGAAATGCCGTCACCTCGTTCAACAATACCTTGATTCCACTCGTGGCATCGGCTGGGGCAAGGACGGGCGCCACCCATCCCTTCACGGTACTCGTTATGTTTAATCTTTCGAGAAATTTTAGCAAATTTGCATTTTTGTTGCCTTTTTGGGAGAAAATGGAGATAGTCCGAGGTACTGGAATTAGTTTGTGATTGGAAGTGATGCTCACCAGTGGAAATTTGTTCCGTATTGAAGTTGTTGTTTTCTGAAATATCTTTGGTTTATGAATCCCCGTGGACGTATACTTTTTGAAATCAATCTGATTATTTTTGAAGTTGTTACTCGCTGGCTGGATTTTTCTCCATTTTTTCCTTTTTTGTTTGGGTTTCCTATGTAATTTCAATGACCGAGTGAATGAATTAACTATACGTTCTCTACAATCATCTGATGTTGTTTGCTTCTTGCTTTGGTTAGGTCCTAAAGTGGAGCCAGCCGAATCTGAGTGATCCGCTGGGTGGAACAACGGTGAGTTCAAATGTTTGCAAGTTTTTGGTTAATTTCAGTTCCTCGTCGTACTGAAAATCAAACCTTTTCTTTTTGTCAAAGCTTGAATAAATAACAGTGTATATCAGCTCTTTGCTTTATTCTTGTACTGCTACGAGGTGTGAAAAGAATTATTAACTCAGATCAGTGGTTAATAATTCCGTTTAGTTTTTAACTCTCTGTAAGTGTGATAACTTTGTGGCAATGCCTGCAAGCTTTCCTAACATTTTTCTGAATGGTAGCTTGTTTCTTAGAATGACTGAAATTTCTGAAAGGCTACACAATCATAGTTTTTTCAAGTGTATGCAGGAGACATGAAGTTAACATTAAGTGGAGGGCCATCGAAGCTGT

mRNA sequence

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCTCCGCCGGACGATTTCGATCCGGAGAATCCGTATAAGGATCCAGTGGCGATGTTAGAGATGAGGGAATACATTGTAAGAGAGAAGTGGATCGATATTGAAAAGGCCAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATCGAAGGAGTCAACCATCTGCAGAAATGCCGTCACCTCGTTCAACAATACCTTGATTCCACTCGTGGCATCGGCTGGGGCAAGGACGGGCGCCACCCATCCCTTCACGGTCCTAAAGTGGAGCCAGCCGAATCTGAGTGA

Coding sequence (CDS)

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCTCCGCCGGACGATTTCGATCCGGAGAATCCGTATAAGGATCCAGTGGCGATGTTAGAGATGAGGGAATACATTGTAAGAGAGAAGTGGATCGATATTGAAAAGGCCAAGATACTGAGGGAAAAGCTCAGATGGTGCTACCGTATCGAAGGAGTCAACCATCTGCAGAAATGCCGTCACCTCGTTCAACAATACCTTGATTCCACTCGTGGCATCGGCTGGGGCAAGGACGGGCGCCACCCATCCCTTCACGGTCCTAAAGTGGAGCCAGCCGAATCTGAGTGA

Protein sequence

MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRIEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE*
Homology
[Close]
BLAST of Csa1G042310 vs. Swiss-Prot
Match: NDBAB_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana GN=At3g18410 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45
Identity = 85/106 (80.19%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 1   MGRKKTV-EFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPENPYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK E  E+E
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]
BLAST of Csa1G042310 vs. Swiss-Prot
Match: NDBAA_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis thaliana GN=At1g49140 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.4e-44
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1 

Query: 1   MGRKKTV-EFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPENPYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPK---VEPAE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK   VE AE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVEEAE 107

[Close]
BLAST of Csa1G042310 vs. Swiss-Prot
Match: NDUS6_NEUCR (NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-12.3 PE=3 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-08
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1 

Query: 14 PDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRIEGVNHLQKCRHLV 73
          P  FD  + Y D   + + ++ I+RE+W+ +   +++RE+L  CY  EGVNHL+KC HL 
Sbjct: 17 PPTFDGVD-YNDTKRLKQAQDAIIREQWVRVMMGRLVREELSKCYYREGVNHLEKCGHLR 76

Query: 74 QQYL 78
          ++YL
Sbjct: 77 ERYL 79

[Close]
BLAST of Csa1G042310 vs. TrEMBL
Match: A0A0A0LSZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042310 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.3e-57
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]
BLAST of Csa1G042310 vs. TrEMBL
Match: A0A0L9VGX1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g021200 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.4e-51
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MGRKKT-VEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK  VEFDESPPDDFDP NPYKDPVAMLEMREYIVREKWI IEKAKI+REKLRWCYR
Sbjct: 1   MGRKKGYVEFDESPPDDFDPANPYKDPVAMLEMREYIVREKWIQIEKAKIIREKLRWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           IEG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLH PKVEP ESE
Sbjct: 61  IEGINHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHAPKVEPVESE 106

[Close]
BLAST of Csa1G042310 vs. TrEMBL
Match: A0A0S3TCA7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G237700 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.4e-51
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MGRKKT-VEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK  VEFDESPPDDFDP NPYKDPVAMLEMREYIVREKWI IEKAKI+REKLRWCYR
Sbjct: 1   MGRKKGYVEFDESPPDDFDPANPYKDPVAMLEMREYIVREKWIQIEKAKIIREKLRWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           IEG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLH PKVEP ESE
Sbjct: 61  IEGINHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHAPKVEPVESE 106

[Close]
BLAST of Csa1G042310 vs. TrEMBL
Match: V7C3Q8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G157200g PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 95/106 (89.62%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MGRKKT-VEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK  VEFDESPPDDFDP NPYKDPVAMLEMREYIVREKWI IEKAKI+R+KLRWCYR
Sbjct: 1   MGRKKGYVEFDESPPDDFDPANPYKDPVAMLEMREYIVREKWIQIEKAKIIRDKLRWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           IEG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLH PKVEP ESE
Sbjct: 61  IEGINHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHAPKVEPVESE 106

[Close]
BLAST of Csa1G042310 vs. TrEMBL
Match: C6T2A2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G091500 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-49
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MGRKKT-VEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK  VEF+ESPPDDFDP NPYKDPVAMLEMRE+IVREKWI IEKAKI+REKLRWCYR
Sbjct: 1   MGRKKGYVEFEESPPDDFDPANPYKDPVAMLEMREHIVREKWIQIEKAKIIREKLRWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           IEGVNHLQKCRHLV QYL+STRGIGWGKDGRHPSLH PKV+P ESE
Sbjct: 61  IEGVNHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHAPKVDPVESE 106

[Close]
BLAST of Csa1G042310 vs. TAIR10
Match: AT3G18410.1 (AT3G18410.1 Complex I subunit NDUFS6)

HSP 1 Score: 183.0 bits (463), Expect = 9.9e-47
Identity = 85/106 (80.19%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 1   MGRKKTV-EFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPENPYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK E  E+E
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]
BLAST of Csa1G042310 vs. TAIR10
Match: AT1G49140.1 (AT1G49140.1 Complex I subunit NDUFS6)

HSP 1 Score: 177.6 bits (449), Expect = 4.2e-45
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1 

Query: 1   MGRKKTV-EFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FDPENPYKDPVAM+EMRE+IVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPK---VEPAE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK   VE AE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVEEAE 107

[Close]
BLAST of Csa1G042310 vs. NCBI nr
Match: gi|449439399|ref|XP_004137473.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 228.0 bits (580), Expect = 7.6e-57
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]
BLAST of Csa1G042310 vs. NCBI nr
Match: gi|950935797|ref|XP_014517417.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 208.0 bits (528), Expect = 8.1e-51
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MGRKKT-VEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK  VEFDESPPDDFDP NPYKDPVAMLEMREYIVREKWI IEKAKI+REKLRWCYR
Sbjct: 1   MGRKKGYVEFDESPPDDFDPANPYKDPVAMLEMREYIVREKWIQIEKAKIIREKLRWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           IEGVNHLQKCRHLV QYL+STRGIGWGKDGRHPSLH PKVEP ESE
Sbjct: 61  IEGVNHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHAPKVEPVESE 106

[Close]
BLAST of Csa1G042310 vs. NCBI nr
Match: gi|920714232|gb|KOM54320.1| (hypothetical protein LR48_Vigan10g021200 [Vigna angularis])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MGRKKT-VEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK  VEFDESPPDDFDP NPYKDPVAMLEMREYIVREKWI IEKAKI+REKLRWCYR
Sbjct: 1   MGRKKGYVEFDESPPDDFDPANPYKDPVAMLEMREYIVREKWIQIEKAKIIREKLRWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           IEG+NHLQKCRHLV QYL+STRGIGWGKDGRHPSLH PKVEP ESE
Sbjct: 61  IEGINHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHAPKVEPVESE 106

[Close]
BLAST of Csa1G042310 vs. NCBI nr
Match: gi|1012174932|ref|XP_015966683.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-50
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MGRKKT-VEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK  VEFDESPPDDFDPENPYKDPVA LEMRE+IVREKWI IEKAKI+REKLRWCYR
Sbjct: 1   MGRKKGYVEFDESPPDDFDPENPYKDPVAFLEMREHIVREKWIQIEKAKIIREKLRWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPK E  ESE
Sbjct: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKPEAVESE 106

[Close]
BLAST of Csa1G042310 vs. NCBI nr
Match: gi|502163729|ref|XP_004512930.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-50
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 1 

Query: 1   MGRKKT-VEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYR 60
           MGRKK  VEF+ESPPDDFDP NPYKDPVAMLEMRE+IVREKWI IEKAKI+REKLRWCYR
Sbjct: 1   MGRKKGYVEFEESPPDDFDPANPYKDPVAMLEMREHIVREKWIQIEKAKIIREKLRWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 106
           IEG+NHLQKCRHLV+QYL+STRGIGWGKDGRHPSLHGPKVEP ESE
Sbjct: 61  IEGINHLQKCRHLVKQYLESTRGIGWGKDGRHPSLHGPKVEPVESE 106

The following BLAST results are available for this feature:
BLAST of Csa1G042310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDBAB_ARATH1.8e-4580.19NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis th... [more]
NDBAA_ARATH7.4e-4479.44NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis th... [more]
NDUS6_NEUCR5.0e-0840.63NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crass... [more]
BLAST of Csa1G042310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSZ4_CUCSA5.3e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042310 PE=4 SV=1[more]
A0A0L9VGX1_PHAAN7.4e-5190.57Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g021200 PE=4 SV=1[more]
A0A0S3TCA7_PHAAN7.4e-5190.57Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G237700 PE=... [more]
V7C3Q8_PHAVU1.7e-5089.62Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G157200g PE=4 SV=1[more]
C6T2A2_SOYBN1.4e-4988.68Uncharacterized protein OS=Glycine max GN=GLYMA_07G091500 PE=2 SV=1[more]
BLAST of Csa1G042310 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18410.19.9e-4780.19 Complex I subunit NDUFS6[more]
AT1G49140.14.2e-4579.44 Complex I subunit NDUFS6[more]
BLAST of Csa1G042310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439399|ref|XP_004137473.1|7.6e-57100.00PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|950935797|ref|XP_014517417.1|8.1e-5191.51PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|920714232|gb|KOM54320.1|1.1e-5090.57hypothetical protein LR48_Vigan10g021200 [Vigna angularis][more]
gi|1012174932|ref|XP_015966683.1|1.8e-5091.51PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|502163729|ref|XP_004512930.1|1.8e-5089.62PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020163Complex_I_NDUFS6
IPR020163Complex_I_NDUFS6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU086209cucumber EST collection version 3.0transcribed_cluster
CU091200cucumber EST collection version 3.0transcribed_cluster
CU104184cucumber EST collection version 3.0transcribed_cluster
CU108418cucumber EST collection version 3.0transcribed_cluster
CU108431cucumber EST collection version 3.0transcribed_cluster
CU120237cucumber EST collection version 3.0transcribed_cluster
CU130501cucumber EST collection version 3.0transcribed_cluster
CU136679cucumber EST collection version 3.0transcribed_cluster
CU146168cucumber EST collection version 3.0transcribed_cluster
CU154304cucumber EST collection version 3.0transcribed_cluster
CU155061cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G042310.2Csa1G042310.2mRNA
Csa1G042310.1Csa1G042310.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU091200CU091200transcribed_cluster
CU108431CU108431transcribed_cluster
CU154304CU154304transcribed_cluster
CU120237CU120237transcribed_cluster
CU086209CU086209transcribed_cluster
CU108418CU108418transcribed_cluster
CU146168CU146168transcribed_cluster
CU104184CU104184transcribed_cluster
CU130501CU130501transcribed_cluster
CU155061CU155061transcribed_cluster
CU136679CU136679transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020163Complex I subunit NDUFS6PRODOMPD069254coord: 25..81
score: 4.0
NoneNo IPR availablePANTHERPTHR13094NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNITcoord: 1..103
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G042310Cla018505Watermelon (97103) v1cuwmB062
Csa1G042310MELO3C002086Melon (DHL92) v3.5.1cumeB027
Csa1G042310ClCG04G011140Watermelon (Charleston Gray)cuwcgB057
Csa1G042310Lsi02G001790Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G042310MELO3C002086.2Melon (DHL92) v3.6.1cumedB022
Csa1G042310Cla97C04G078000Watermelon (97103) v2cuwmbB054
Csa1G042310Bhi08G001019Wax gourdcuwgoB028
Csa1G042310CSPI01G06750Wild cucumber (PI 183967)cpicuB000
Csa1G042310Cucsa.121450Cucumber (Gy14) v1cgycuB159
Csa1G042310CmaCh18G000400Cucurbita maxima (Rimu)cmacuB390
Csa1G042310CmaCh13G010260Cucurbita maxima (Rimu)cmacuB217
Csa1G042310CmoCh13G010670Cucurbita moschata (Rifu)cmocuB202
Csa1G042310CmoCh18G000330Cucurbita moschata (Rifu)cmocuB380
Csa1G042310Cp4.1LG20g01190Cucurbita pepo (Zucchini)cpecuB505
Csa1G042310Cp4.1LG09g11400Cucurbita pepo (Zucchini)cpecuB029
Csa1G042310CsGy1G006480Cucumber (Gy14) v2cgybcuB001
Csa1G042310Carg04811Silver-seed gourdcarcuB0415
Csa1G042310Carg22752Silver-seed gourdcarcuB0542
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G042310Wax gourdcuwgoB014
Csa1G042310Cucumber (Chinese Long) v2cucuB031
Csa1G042310Cucumber (Chinese Long) v2cucuB000
Csa1G042310Cucumber (Gy14) v1cgycuB406
Csa1G042310Cucurbita maxima (Rimu)cmacuB069
Csa1G042310Cucurbita maxima (Rimu)cmacuB088
Csa1G042310Cucurbita maxima (Rimu)cmacuB406
Csa1G042310Cucurbita moschata (Rifu)cmocuB059
Csa1G042310Cucurbita moschata (Rifu)cmocuB077
Csa1G042310Cucurbita moschata (Rifu)cmocuB395
Csa1G042310Melon (DHL92) v3.5.1cumeB011
Csa1G042310Melon (DHL92) v3.5.1cumeB056
Csa1G042310Watermelon (Charleston Gray)cuwcgB064
Csa1G042310Watermelon (Charleston Gray)cuwcgB083
Csa1G042310Watermelon (97103) v1cuwmB040
Csa1G042310Watermelon (97103) v1cuwmB096
Csa1G042310Cucurbita pepo (Zucchini)cpecuB028
Csa1G042310Cucurbita pepo (Zucchini)cpecuB357
Csa1G042310Cucurbita pepo (Zucchini)cpecuB655
Csa1G042310Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G042310Cucumber (Gy14) v2cgybcuB004
Csa1G042310Cucumber (Gy14) v2cgybcuB199
Csa1G042310Melon (DHL92) v3.6.1cumedB006
Csa1G042310Melon (DHL92) v3.6.1cumedB048
Csa1G042310Silver-seed gourdcarcuB0492
Csa1G042310Silver-seed gourdcarcuB0623
Csa1G042310Watermelon (97103) v2cuwmbB080