Carg22752 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22752
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NADH-ubiquinone oxidoreductase, subunit 10
Location	Cucurbita_argyrosperma_scaffold_224 : 100324 .. 101363 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCACCACCGGACGATTTCGATGCGGAGCATCCGTACAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACATATTGTGAGAGAGAAATGGATCGAAATCGAAAAGGCGAAGATACTGAGGGAAAAACTAAGATGGTGCTACCGCATCGAAGGAGTCAACCATCTTCAGAAATGCCGCCACCTTGTTCAGCAATACCTTGATTCCACTCGCGGCATCGGTTGGGGCAAGGATGGACGCCACCCATCTCTTCATGGTTCTCTCTTTTAGTCACTCATTCTATTTAATTTCCAAGAAGTTTGGATGTTTTTTGGACTTTTATTTGCCGTTTGGGTAGAAAGTGGAGATATTTCGAGTAACTGAAAGTAGGTTATGATTGGGTCTGGTATTAACCGTGGCACTTTGCTCTGATTTTGAAGTGTTGTTTTCTATAATATTTCTTGCTCTGATTTTTTTTCTTTTCTTTTTCTCCATCATGTTCCCTATGCAATTTAACTGACTTGAGTGAATGAAGTATAAATCATCTGATGTTGTCTCTTCTTGCTCTGGTTAGGTCCTAAAGTGGAGGCGGTCGAAGCTGAGTAAATTTCTGGGAGGAATAACGGTGAGTTTAAATGTTCCTAAGTTGTTAGGTTATTACTTGGTCTTACTGATTATCAAACTTTATTTGTTTCAGAGATTGAATAAAAGAACGATGAATATTAGCCCTTTATTTTATTTCGTGTACTGCTACGAGGGGTGTAAAGAATTTTGAACTCAGATCAATGGTCAATAATTCCTTTTAATTTCCATTTCTATGTTGTTTGAGAACTTTGTAGCAATTTACAGTAAGGTTTCCTAAAATTTTTCTCACTAGTGGTTTGATTTTGAGAATGATTGAATTTTTTTTTCACAAGGCATTCAATCATAGTTCTTTCAAGCGTATGTATAAGACCTGACATTAACAGTGTGATGGGTGGGGGTGGGGGCCGTTGAAGCTGTATATACCTTTGTTGATGTTGTCTCATAAT

mRNA sequence

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCACCACCGGACGATTTCGATGCGGAGCATCCGTACAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACATATTGTGAGAGAGAAATGGATCGAAATCGAAAAGGCGAAGATACTGAGGGAAAAACTAAGATGGTGCTACCGCATCGAAGGAGTCAACCATCTTCAGAAATGCCGCCACCTTGTTCAGCAATACCTTGATTCCACTCGCGGCATCGGTTGGGGCAAGGATGGACGCCACCCATCTCTTCATGGTCCTAAAGTGGAGGCGGTCGAAGCTGAGTAAATTTCTGGGAGGAATAACGGTGAGTTTAAATGTTCCTAAGTTGTTAGGTTATTACTTGGTCTTACTGATTATCAAACTTTATTTGTTTCAGAGATTGAATAAAAGAACGATGAATATTAGCCCTTTATTTTATTTCGTGTACTGCTACGAGGGGTGTAAAGAATTTTGAACTCAGATCAATGGTCAATAATTCCTTTTAATTTCCATTTCTATGTTGTTTGAGAACTTTGTAGCAATTTACAGTAAGGTTTCCTAAAATTTTTCTCACTAGTGGTTTGATTTTGAGAATGATTGAATTTTTTTTTCACAAGGCATTCAATCATAGTTCTTTCAAGCGTATGTATAAGACCTGACATTAACAGTGTGATGGGTGGGGGTGGGGGCCGTTGAAGCTGTATATACCTTTGTTGATGTTGTCTCATAAT

Coding sequence (CDS)

ATGGGGAGGAAGAAGACAGTGGAGTTCGATGAATCACCACCGGACGATTTCGATGCGGAGCATCCGTACAAGGATCCAGTGGCGATGCTGGAGATGAGGGAACATATTGTGAGAGAGAAATGGATCGAAATCGAAAAGGCGAAGATACTGAGGGAAAAACTAAGATGGTGCTACCGCATCGAAGGAGTCAACCATCTTCAGAAATGCCGCCACCTTGTTCAGCAATACCTTGATTCCACTCGCGGCATCGGTTGGGGCAAGGATGGACGCCACCCATCTCTTCATGGTCCTAAAGTGGAGGCGGTCGAAGCTGAGTAA

Protein sequence

MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRIEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE

Homology

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_022954577.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >XP_022954578.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata] >XP_022954579.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita moschata])

HSP 1 Score: 225.3 bits (573), Expect = 9.5e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_022994087.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994089.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994090.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994091.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima] >XP_022994092.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita maxima])

HSP 1 Score: 224.2 bits (570), Expect = 2.1e-55
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 105

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_022924082.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita moschata] >XP_023001015.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita maxima] >XP_023519758.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita pepo subsp. pepo] >XP_023519759.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 1.8e-54
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD EHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE+VE+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVESVESE 105

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_022137450.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charantia] >XP_022137451.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 3.7e-52
Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGR+KTVEFDESPPDDFDAE+PYKDPVAMLEMREHIVREKWI+IEKAKILRE+LRWCYRI
Sbjct: 1   MGRRKTVEFDESPPDDFDAENPYKDPVAMLEMREHIVREKWIDIEKAKILRERLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPGESE 105

[Close]

BLAST of Carg22752 vs. NCBI nr
Match: XP_004137473.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis sativus] >XP_004137474.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis sativus] >XP_008457988.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucumis melo] >KGN64119.1 hypothetical protein Csa_1G042310 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 6.4e-52
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD E+PYKDPVAMLEMRE+IVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]

BLAST of Carg22752 vs. TAIR10
Match: AT3G18410.1 (Complex I subunit NDUFS6)

HSP 1 Score: 184.5 bits (467), Expect = 3.4e-47
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI+IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK EAVEAE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of Carg22752 vs. TAIR10
Match: AT1G49140.1 (Complex I subunit NDUFS6)

HSP 1 Score: 176.4 bits (446), Expect = 9.2e-45
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK  AVE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVE 104

[Close]

BLAST of Carg22752 vs. Swiss-Prot
Match: sp|Q94C12|NDBAB_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana OX=3702 GN=At3g18410 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.1e-46
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI+IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIQIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           +EGVNH QKCRHLVQQYLDSTRG+GWGKD R  SLHGPK EAVEAE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDSTRGVGWGKDHRPISLHGPKPEAVEAE 106

[Close]

BLAST of Carg22752 vs. Swiss-Prot
Match: sp|Q9M9B4|NDBAA_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis thaliana OX=3702 GN=At1g49140 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-43
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MGRKKTV-EFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYR 60
           MGRKK + EF+ES PD FD E+PYKDPVAM+EMREHIVREKWI IEKAKILREK++WCYR
Sbjct: 1   MGRKKGLPEFEESAPDGFDPENPYKDPVAMVEMREHIVREKWIHIEKAKILREKVKWCYR 60

Query: 61  IEGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVE 104
           +EGVNH QKCRHLVQQYLD+TRG+GWGKD R  SLHGPK  AVE
Sbjct: 61  VEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPKPVAVE 104

[Close]

BLAST of Carg22752 vs. Swiss-Prot
Match: sp|Q03015|NDUS6_NEUCR (NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=nuo-12.3 PE=3 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 14 PDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRIEGVNHLQKCRHLV 73
          P  FD    Y D   + + ++ I+RE+W+ +   +++RE+L  CY  EGVNHL+KC HL 
Sbjct: 17 PPTFDGV-DYNDTKRLKQAQDAIIREQWVRVMMGRLVREELSKCYYREGVNHLEKCGHLR 76

Query: 74 QQYL 78
          ++YL
Sbjct: 77 ERYL 79

[Close]

BLAST of Carg22752 vs. TrEMBL
Match: tr|A0A1S3C7E2|A0A1S3C7E2_CUCME (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucumis melo OX=3656 GN=LOC103497523 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.2e-52
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD E+PYKDPVAMLEMRE+IVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]

BLAST of Carg22752 vs. TrEMBL
Match: tr|A0A0A0LSZ4|A0A0A0LSZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042310 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.2e-52
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKKTVEFDESPPDDFD E+PYKDPVAMLEMRE+IVREKWI+IEKAKILREKLRWCYRI
Sbjct: 1   MGRKKTVEFDESPPDDFDPENPYKDPVAMLEMREYIVREKWIDIEKAKILREKLRWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVE  E+E
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEPAESE 105

[Close]

BLAST of Carg22752 vs. TrEMBL
Match: tr|A0A2P5F9N2|A0A2P5F9N2_9ROSA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Trema orientalis OX=63057 GN=TorRG33x02_097430 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.0e-50
Identity = 98/107 (91.59%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKK VEFDESPPDDFD E+PYKDPVAMLEMREH+VREKWI IEKAKILREKL+WCYRI
Sbjct: 1   MGRKKGVEFDESPPDDFDPENPYKDPVAMLEMREHLVREKWIAIEKAKILREKLKWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKV--EAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKV  EA EAE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVVAEAEEAE 107

[Close]

BLAST of Carg22752 vs. TrEMBL
Match: tr|A0A2P5B3K1|A0A2P5B3K1_PARAD (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_274620 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 98/107 (91.59%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKK V FDESPPDDFD E+PYKDPVAMLEMREHIVREKWI IEKAKILREKL+WCYRI
Sbjct: 1   MGRKKGVVFDESPPDDFDPENPYKDPVAMLEMREHIVREKWIAIEKAKILREKLKWCYRI 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKV--EAVEAE 106
           EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKV  EA EAE
Sbjct: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVVAEAEEAE 107

[Close]

BLAST of Carg22752 vs. TrEMBL
Match: tr|A0A2I4FEI4|A0A2I4FEI4_9ROSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Juglans regia OX=51240 GN=LOC108998064 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.6e-49
Identity = 90/105 (85.71%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MGRKKTVEFDESPPDDFDAEHPYKDPVAMLEMREHIVREKWIEIEKAKILREKLRWCYRI 60
           MGRKK V+FDE PPDDFD  +PY DPVAMLEMREHIVREKWI+IEKAKI+REKL+WCYR+
Sbjct: 1   MGRKKGVDFDELPPDDFDPSNPYNDPVAMLEMREHIVREKWIQIEKAKIIREKLKWCYRV 60

Query: 61  EGVNHLQKCRHLVQQYLDSTRGIGWGKDGRHPSLHGPKVEAVEAE 106
           EG+NHLQKCRHLVQQYLD+TRGIGWGKDGRHPSLHGPKVEAVE++
Sbjct: 61  EGINHLQKCRHLVQQYLDATRGIGWGKDGRHPSLHGPKVEAVESD 105

The following BLAST results are available for this feature:

BLAST of Carg22752 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954577.1	9.5e-56	100.00	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m...	[more]
XP_022994087.1	2.1e-55	99.05	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Cucurbita m...	[more]
XP_022924082.1	1.8e-54	97.14	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucurbita moscha...	[more]
XP_022137450.1	3.7e-52	93.33	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Momordica charan...	[more]
XP_004137473.1	6.4e-52	93.33	PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Cucum...	[more]

BLAST of Carg22752 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18410.1	3.4e-47	82.08	Complex I subunit NDUFS6	[more]
AT1G49140.1	9.2e-45	79.81	Complex I subunit NDUFS6	[more]

BLAST of Carg22752 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94C12\|NDBAB_ARATH	6.1e-46	82.08	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis th...	[more]
sp\|Q9M9B4\|NDBAA_ARATH	1.7e-43	79.81	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis th...	[more]
sp\|Q03015\|NDUS6_NEUCR	1.5e-07	40.63	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crass...	[more]

BLAST of Carg22752 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C7E2\|A0A1S3C7E2_CUCME	4.2e-52	93.33	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Cucumis melo O...	[more]
tr\|A0A0A0LSZ4\|A0A0A0LSZ4_CUCSA	4.2e-52	93.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042310 PE=4 SV=1	[more]
tr\|A0A2P5F9N2\|A0A2P5F9N2_9ROSA	3.0e-50	91.59	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Trema oriental...	[more]
tr\|A0A2P5B3K1\|A0A2P5B3K1_PARAD	1.1e-49	91.59	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Parasponia and...	[more]
tr\|A0A2I4FEI4\|A0A2I4FEI4_9ROSI	2.6e-49	85.71	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like OS=Juglans r...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020163	Complex_I_NDUFS6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22752-RA	Carg22752-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..105
None	No IPR available	PANTHER	PTHR13094	NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT	coord: 3..96
IPR020163	Complex I subunit NDUFS6	PRODOM	PD069254		coord: 25..81 e-value: 4.0E-25 score: 278.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22752	Cla018505	Watermelon (97103) v1	carwmB0509
Carg22752	Csa1G042310	Cucumber (Chinese Long) v2	carcuB0542
Carg22752	MELO3C002086	Melon (DHL92) v3.5.1	carmeB0516
Carg22752	ClCG04G011140	Watermelon (Charleston Gray)	carwcgB0498
Carg22752	CSPI01G06750	Wild cucumber (PI 183967)	carcpiB0549
Carg22752	Cucsa.121450	Cucumber (Gy14) v1	carcgyB0589
Carg22752	CmaCh18G000400	Cucurbita maxima (Rimu)	carcmaB0722
Carg22752	CmaCh13G010260	Cucurbita maxima (Rimu)	carcmaB0721
Carg22752	CmoCh18G000330	Cucurbita moschata (Rifu)	carcmoB0699
Carg22752	CmoCh13G010670	Cucurbita moschata (Rifu)	carcmoB0698
Carg22752	Lsi02G001790	Bottle gourd (USVL1VR-Ls)	carlsiB467
Carg22752	Cp4.1LG09g11400	Cucurbita pepo (Zucchini)	carcpeB0722
Carg22752	Cp4.1LG20g01190	Cucurbita pepo (Zucchini)	carcpeB0725
Carg22752	CsGy1G006480	Cucumber (Gy14) v2	carcgybB0518
Carg22752	MELO3C002086.2	Melon (DHL92) v3.6.1	carmedB0522
Carg22752	CsaV3_1G006620	Cucumber (Chinese Long) v3	carcucB0548
Carg22752	Cla97C04G078000	Watermelon (97103) v2	carwmbB0536
Carg22752	Bhi08G001019	Wax gourd	carwgoB0623

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22752	Carg04811	Silver-seed gourd	carcarB413

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22752	Cucumber (Gy14) v1	carcgyB0590
Carg22752	Cucurbita maxima (Rimu)	carcmaB0719
Carg22752	Cucurbita maxima (Rimu)	carcmaB0720
Carg22752	Cucurbita moschata (Rifu)	carcmoB0697
Carg22752	Cucurbita pepo (Zucchini)	carcpeB0723
Carg22752	Cucurbita pepo (Zucchini)	carcpeB0726
Carg22752	Wild cucumber (PI 183967)	carcpiB0550
Carg22752	Cucumber (Chinese Long) v2	carcuB0543
Carg22752	Cucumber (Chinese Long) v3	carcucB0549
Carg22752	Bottle gourd (USVL1VR-Ls)	carlsiB468
Carg22752	Melon (DHL92) v3.5.1	carmeB0518
Carg22752	Melon (DHL92) v3.6.1	carmedB0524
Carg22752	Watermelon (Charleston Gray)	carwcgB0500
Carg22752	Watermelon (97103) v1	carwmB0511
Carg22752	Watermelon (97103) v2	carwmbB0538
Carg22752	Wax gourd	carwgoB0622
Carg22752	Silver-seed gourd	carcarB496
Carg22752	Cucumber (Gy14) v2	carcgybB0519