Csa1G029590 (gene) Cucumber (Chinese Long) v2

NameCsa1G029590
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3130650 .. 3130892 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAAAAGAGAGGAGCACCTGGTGGTTGCTGCTGGTAAAGTGGTAGTGGTGGTGACAGAGGAGGATGAGGGCTGTTTCCGCGGTGTCGCTGCTGCTAATGCTTCCCTTCTTTCTTTTCTTCTTCTTCTTTTTCTCTTTCTCTGGGAGCCCAGCCTGCTGTCTCGAATTGAACTCGTGGACCTAAGGCCAGTTAGATACTTTTCGAGGCATTCATTGTTTTTTTCCCCATTATTTTAA

mRNA sequence

ATGGAGATGAAAAGAGAGGAGCACCTGGTGGTTGCTGCTGGTAAAGTGGTAGTGGTGGTGACAGAGGAGGATGAGGGCTGTTTCCGCGGTGTCGCTGCTGCTAATGCTTCCCTTCTTTCTTTTCTTCTTCTTCTTTTTCTCTTTCTCTGGGAGCCCAGCCTGCTGTCTCGAATTGAACTCGTGGACCTAAGGCCAGTTAGATACTTTTCGAGGCATTCATTGTTTTTTTCCCCATTATTTTAA

Coding sequence (CDS)

ATGGAGATGAAAAGAGAGGAGCACCTGGTGGTTGCTGCTGGTAAAGTGGTAGTGGTGGTGACAGAGGAGGATGAGGGCTGTTTCCGCGGTGTCGCTGCTGCTAATGCTTCCCTTCTTTCTTTTCTTCTTCTTCTTTTTCTCTTTCTCTGGGAGCCCAGCCTGCTGTCTCGAATTGAACTCGTGGACCTAAGGCCAGTTAGATACTTTTCGAGGCATTCATTGTTTTTTTCCCCATTATTTTAA

Protein sequence

MEMKREEHLVVAAGKVVVVVTEEDEGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIELVDLRPVRYFSRHSLFFSPLF*
BLAST of Csa1G029590 vs. TrEMBL
Match: A0A0A0LT29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G029590 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1

Query: 1  MEMKREEHLVVAAGKVVVVVTEEDEGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL 60
          MEMKREEHLVVAAGKVVVVVTEEDEGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL
Sbjct: 1  MEMKREEHLVVAAGKVVVVVTEEDEGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL 60

Query: 61 VDLRPVRYFSRHSLFFSPLF 81
          VDLRPVRYFSRHSLFFSPLF
Sbjct: 61 VDLRPVRYFSRHSLFFSPLF 80

BLAST of Csa1G029590 vs. NCBI nr
Match: gi|700208836|gb|KGN63932.1| (hypothetical protein Csa_1G029590 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1

Query: 1  MEMKREEHLVVAAGKVVVVVTEEDEGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL 60
          MEMKREEHLVVAAGKVVVVVTEEDEGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL
Sbjct: 1  MEMKREEHLVVAAGKVVVVVTEEDEGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL 60

Query: 61 VDLRPVRYFSRHSLFFSPLF 81
          VDLRPVRYFSRHSLFFSPLF
Sbjct: 61 VDLRPVRYFSRHSLFFSPLF 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LT29_CUCSA3.9e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G029590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700208836|gb|KGN63932.1|5.7e-36100.00hypothetical protein Csa_1G029590 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU108492cucumber EST collection version 3.0transcribed_cluster
CU161268cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G029590.1Csa1G029590.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU161268CU161268transcribed_cluster
CU108492CU108492transcribed_cluster


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G029590CSPI01G04900Wild cucumber (PI 183967)cpicuB000
Csa1G029590CsGy1G004770Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None