Csa1G025910 (gene) Cucumber (Chinese Long) v2

NameCsa1G025910
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2932028 .. 2936728 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGATGAGTTCTCAGAAAGCACATTTCTTCCACCCCATTTCCAGGTATTTCAAATACCCTTCACCCATTGTTCATCTTTAATAAAAAAAAATTATTTCCATCCCATTTTAATTAAACTTCATCATCTATGATCCTGTTCCTGTTCCTGACTTCCTGTCTGTTTCTTTTCTTCATTCATCGACATGGTTTCCTTATTGCTGGAATTCTTGACATTTTGGATTCATGTGCTGCTGCTGTGTTGTGTATATCTGATTTGTTTTCTTGATAGTCACAAGAACAAGAATTATTGGGCATATACTTTTGTGGGTTTCATATATTTTAATTTTTATTGGTCAATTTATTGTTTATTTATTATTAATGAATATAATGATTCCTGCATGGATTTGTGTGAGGGTTGTTGTCCCCCACTGGCCACTCCCCCATTGTGTTGTTTTGTTGGTTTCCCTTCATTCTAGCATCGTATGCTCATGTTTATGTTTATATGTCCATGACAGGTGTTAGAAGCTAGCTCCTTCTAACTATGTTCATGCCATGTGTTTGTCACTGAGTGAAAAAAGCGCACTTTCACAAAACAGGATAACTTTTTACTATTTTCCTCTTCTTTAAATGGTTGTTTCAATGTTTAGCCAACTAGGGTTTCATGGGGTTTGGTGAAATGCCCTAGGCCTAATTAGATTCCTGCTAATTAGTGTTCAACCAACTAAAACGAGAGTAACTATTCCTTTCCTTTGCCCTAAGGGCTATAAATATAATATTTACCTGTTCAAGACAAGATTTTTAAAATTTGTAGGTCACCTATTTTGAAAACCTAATAGGTGAGCTATAAATTTTACCGTTGTGGTTGATGAAATACATAAATCATATCTTTATATCTTATATTATCTTTGAAATAACATTAGTTTATTTTAAATCCCATTTTAGCGAACTACTAGGCGGAGTTTTTTTTTTCATGCAATTGCATAGGGTGCTTAAAATTATATTTAAACATAGGGATACAATTTGCAGATCTCATAGATCAGAGTGTCACTTGCATGTGCCTGACAAGTCAAACAGTCAACGTTAAATCTCTTCTATGCCATTAGATTCGTACAAGACCATAGTCTCAGAAATATTATGCACGCTAAATTTAGGTGAAGAAGCCTTGGTGTCCAAACTAATGTATCTATTAAAAGATAACTGGTAAAATCGAAAGAAGTTAGATATATAAAGTAGAATGGTTGGCAGGGAGAGTAAAAATAGAGCGTTTCAAGTTGTGGATAGGAATTGTAGGTAAGGTTTTTTTGTTCTTTTTGCTTATTATTATTATTACTTTTTTGTTCTATATATTGTAGGAAACCCTTTTTCTAAGGAATTTTTATGTAGATTTGATCTTTTGTATGCCCTCCTGCTCTTTCCCTTACTTGGAAGGAGTTATTTCTATAAAATAAAATAAATAAGTGGGATATTAATAGTGAGTTTAAGACCATTTTTGAAATAGAGTTCTCAAGATGTTCAAGTACTTCACTGAGCTCGGTAGTGTGAGCTTGTAACCGAAGACATAAGTATTATTGAAGTGGTTGGATGTTGGTTCGGTCCACAAAGTAGGGTCTTACTAGGATAATCTCTAGCCTGCCTGTTCCAAGTAGGGAGTTAGGCCTTGGATTTTGGCAAAAGTCCAGGGTTCGCTGCCACTAAAGACCGAGGGAACCACGTGAGACTGGTTTCACAGAGGAGTGTACTCTCATCTTTACAAAAAAAAAAGTGTTTTACTTTTTTGAACAATTTAGGCGTCAGCATATAGTACACTTTGACCCTTTGAAATTTTTTAGAAATACTTTACTGTCGTGTATTTCATGATAAATTTGAACGACCTATTTAAAAAATAGAGGATAGTAAAAACAAACGGTCTTCAAAAATCATCTTTGCCACTGTCATGCATTTGAACTCACCTAGAAATGAAAACCTAATTTTGTAAATAAGTAGGATACATATTATGGAGTTGATTGCAACGTTGGCCACGATCAATTCATTCTTAGATGAGTGCAATGCTTGTAAGAAATTGTGCTATGCATGTGCATGATTCTTCTAAACACCCATTTTTAGACTCACCATATGTAGGCAAAAACTACTCGTGCGTTTGTATTTCACCATCACTGAGCCAGAGCTGAACTTAGTCTAAAGAAGTAGGCCAACGAAAAAAGATTTTTCTACAAAGACATCTTTCATTTCTTAATTATGAAGAATTTGTTTTTACTTTTAACATTCTTCAAACTTCTGCATATCTCAATCTCACATGATAACCTATCATACTCTAAAATTTTAAAAGTCAAAGAAACTTATAGTATATTGAATCTTAGATAGGTGGCTATTGTTGGATTGAAATCATTCCCTTTATGTTCTCTATTATACTCATAGGTCTTTGACCACTAGACCGATTGATTGATAATATTTAAAAGACATCCCAAATCTTACAACATTATATAAATTGCTATCCTATGATCATCACATTAGATCTAGATGTTAGATATCTTTAAGTTTTAAGTTTTTTGAATGTTTGTTTTCCAGAGCTTTAGATGGTAATTTTCTTTCTGTTGAAATATCTTCTTGAAAGAAATAGAAATATGGAGTACATCTTTAGTTCTAGACAACTTGTAGTGAGCACATAACACAAGTTTGAGCATGCTAGTTTCTCTCACATCAACAACTTGCTAAGAATAGAAGAACATGCTTTTGAGCCACTCTGCTTTTTCCACTTTTCGTCTCACATTTTATTCTGATTTTTGTAGTTTGACATTCAAATTTGATTATTTATACCTCTTTTGTGGTCAATATGGAATAAATTACATGCAAATCAGAATTTAGCTTAGAAAAGTAGAGGAACAGCTTTTTAGGGGGAGAAGAATCGAAGTTATTTTAACTTTAAGAAGGAACTCATTTTAGGAAAAATCAAATATAGATTCTTCTCTACGTAACTTTAGGGTTTTTAATAAAAGAAACTATAAGAAGATGGTTGAGGAAACTATTCTCTACAGTGGAGATTGTTCTATTGATACCCCAGTTTAATCATGATCTTTTCGGTCTTATGCAGTTGCTGGTTCTAACTTTGTTCTGTTACTTAAGAGAACATTGATGGATATCTTCGAGAAAAAAACAACCTAAAAAATCAAATATATTTGTCTAGTGTCATTTACTACTAATAGACATTGAAAACACCCTACACATAGACGTTAACATTGTGATATATTTAAAAATATTTTCACTATTTAAAATAATTTCCTTGTTTTTTAGTAATATTATTATACGTTTAATAAAGAAAATTCAATCAAACAAGATTCTAGAATCAAGGTCCCTTGTGGGCGCCTGACTTTGGGTAAATCAACAAATCATTAACATGAACTGAAGTTTACAACATTTGAAATCAAGGTCCCTAGTTGGGTTTAAGTTGTAGGTATTATTTTAAAACACTGATTAGCTGTTCAGTTAAAGAGAACAGTCAGTTGATCGATGATGGAAAAGTGTTTAATTATGAACCAACAGTAAAAAGAAAAGAAATCTTTAGGATTTTAAAAAACTTTGTAGGATTGAAGTTCCCTTTTTCTTTTTCGTGGTGAAGGTGTTGTCAAAATTTAACACTGCATGTGTAGTTGAATGCCCAATGGGCTATTGGGCTTAACAAAATAAAAATGCTATTGGGTCATATGAGGGGGATCAAACAGATCTAATAAAAAACAAACAAATAACCATTTAATCTAATTAGCATTGCTATCTACTTTCATTTTATTTTATTTTCCCTCTAGTTGGCACTCTCCTAAGTTCTAACTAGACATATTCAGCTGGCTGTTCATTTAACATACCCCATATTTATTTTCTTGCTTTAACTGAAAAACAATCAAACAGCCCTTTCACTGTCATGTGTGATTAGAGGTTGAAAACAACGAGTCCCTTTTTTCATCTGAAATTTTGATTAAGATCAAGAGAATCATTTTTTTATATTTCTTTAATTGCTGATATGATAGAAAGTTGAATGTATAATGGAGATATTATTCATGAACTTTTTGGCTTTCTTTCTTTTTTATTCAAAAGGAAAGCTAAAAGTAAAATGTTTGACTTTGTGCTGGTTAGAGGGCCCATTCAAACGGCTGAACTTGTTAATAGGAGCTACTATTTTTTTAAAAGTAAAAATTGAACTAGTCAATTGGAGCTATTGATTTTTAAAAGTAAAAAATGCTATTCTTTGATTCTTAGTTATTGGGTACTACCTTTCTTTCTTTTAACAGATTCAAAGCCTTCCGTGAGATGCAATTAACAACTCGTCAAATCTGGTGATGATTTGCATGTTAGAGAACAATATCTTTTGAAATATTTTGTGCATTCTGGGAATATCAGCATCTTAACAGAAAATATCTTTAATGACACAGCCTGTGATCTACATTTGGCCTTCTGTTCCCAATGCTTTCAAGTCCAATTTAGGCTGAAAATTTTCACACCCAGAAACCAGTTTGTAGTATTATTTTCATAATTTCAGTGGATGTCATTTTCTCTGGCAGGTTGAATGGTGGAAAAATGAAGATGGAGCACCAGAGAGTGGCCTGCCCATCGTGAGTCCTCCATGTTCAGATCTTCACATTTTTATGCTTCTGAAACACTTGATTTTTCTTTGCTTTATCCCGTTCTGA

mRNA sequence

ATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGATGAGTTCTCAGAAAGCACATTTCTTCCACCCCATTTCCAGGTTGAATGGTGGAAAAATGAAGATGGAGCACCAGAGAGTGGCCTGCCCATCGTGAGTCCTCCATGTTCAGATCTTCACATTTTTATGCTTCTGAAACACTTGATTTTTCTTTGCTTTATCCCGTTCTGA

Coding sequence (CDS)

ATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGATGAGTTCTCAGAAAGCACATTTCTTCCACCCCATTTCCAGGTTGAATGGTGGAAAAATGAAGATGGAGCACCAGAGAGTGGCCTGCCCATCGTGAGTCCTCCATGTTCAGATCTTCACATTTTTATGCTTCTGAAACACTTGATTTTTCTTTGCTTTATCCCGTTCTGA

Protein sequence

MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFMLLKHLIFLCFIPF*
BLAST of Csa1G025910 vs. TrEMBL
Match: A0A0A0LPT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025910 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML 60
          MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML
Sbjct: 1  MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML 60

Query: 61 LKHLIFLCFIPF 73
          LKHLIFLCFIPF
Sbjct: 61 LKHLIFLCFIPF 72

BLAST of Csa1G025910 vs. NCBI nr
Match: gi|700208814|gb|KGN63910.1| (hypothetical protein Csa_1G025910 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML 60
          MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML
Sbjct: 1  MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML 60

Query: 61 LKHLIFLCFIPF 73
          LKHLIFLCFIPF
Sbjct: 61 LKHLIFLCFIPF 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LPT3_CUCSA2.3e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700208814|gb|KGN63910.1|3.3e-35100.00hypothetical protein Csa_1G025910 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU102416cucumber EST collection version 3.0transcribed_cluster
CU117082cucumber EST collection version 3.0transcribed_cluster
CU156371cucumber EST collection version 3.0transcribed_cluster
CU159883cucumber EST collection version 3.0transcribed_cluster
CU173060cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G025910.1Csa1G025910.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU173060CU173060transcribed_cluster
CU102416CU102416transcribed_cluster
CU159883CU159883transcribed_cluster
CU117082CU117082transcribed_cluster
CU156371CU156371transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G025910Watermelon (97103) v2cuwmbB051
Csa1G025910Wax gourdcuwgoB065
Csa1G025910Cucumber (Gy14) v1cgycuB137
Csa1G025910Melon (DHL92) v3.5.1cumeB037
Csa1G025910Watermelon (Charleston Gray)cuwcgB053
Csa1G025910Watermelon (97103) v1cuwmB029
Csa1G025910Bottle gourd (USVL1VR-Ls)culsiB029
Csa1G025910Cucumber (Gy14) v2cgybcuB001