Csa1G025910.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G025910.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2932028 .. 2936728 (-)
Sequence length219
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGATGAGTTCTCAGAAAGCACATTTCTTCCACCCCATTTCCAGGTATTTCAAATACCCTTCACCCATTGTTCATCTTTAATAAAAAAAAATTATTTCCATCCCATTTTAATTAAACTTCATCATCTATGATCCTGTTCCTGTTCCTGACTTCCTGTCTGTTTCTTTTCTTCATTCATCGACATGGTTTCCTTATTGCTGGAATTCTTGACATTTTGGATTCATGTGCTGCTGCTGTGTTGTGTATATCTGATTTGTTTTCTTGATAGTCACAAGAACAAGAATTATTGGGCATATACTTTTGTGGGTTTCATATATTTTAATTTTTATTGGTCAATTTATTGTTTATTTATTATTAATGAATATAATGATTCCTGCATGGATTTGTGTGAGGGTTGTTGTCCCCCACTGGCCACTCCCCCATTGTGTTGTTTTGTTGGTTTCCCTTCATTCTAGCATCGTATGCTCATGTTTATGTTTATATGTCCATGACAGGTGTTAGAAGCTAGCTCCTTCTAACTATGTTCATGCCATGTGTTTGTCACTGAGTGAAAAAAGCGCACTTTCACAAAACAGGATAACTTTTTACTATTTTCCTCTTCTTTAAATGGTTGTTTCAATGTTTAGCCAACTAGGGTTTCATGGGGTTTGGTGAAATGCCCTAGGCCTAATTAGATTCCTGCTAATTAGTGTTCAACCAACTAAAACGAGAGTAACTATTCCTTTCCTTTGCCCTAAGGGCTATAAATATAATATTTACCTGTTCAAGACAAGATTTTTAAAATTTGTAGGTCACCTATTTTGAAAACCTAATAGGTGAGCTATAAATTTTACCGTTGTGGTTGATGAAATACATAAATCATATCTTTATATCTTATATTATCTTTGAAATAACATTAGTTTATTTTAAATCCCATTTTAGCGAACTACTAGGCGGAGTTTTTTTTTTCATGCAATTGCATAGGGTGCTTAAAATTATATTTAAACATAGGGATACAATTTGCAGATCTCATAGATCAGAGTGTCACTTGCATGTGCCTGACAAGTCAAACAGTCAACGTTAAATCTCTTCTATGCCATTAGATTCGTACAAGACCATAGTCTCAGAAATATTATGCACGCTAAATTTAGGTGAAGAAGCCTTGGTGTCCAAACTAATGTATCTATTAAAAGATAACTGGTAAAATCGAAAGAAGTTAGATATATAAAGTAGAATGGTTGGCAGGGAGAGTAAAAATAGAGCGTTTCAAGTTGTGGATAGGAATTGTAGGTAAGGTTTTTTTGTTCTTTTTGCTTATTATTATTATTACTTTTTTGTTCTATATATTGTAGGAAACCCTTTTTCTAAGGAATTTTTATGTAGATTTGATCTTTTGTATGCCCTCCTGCTCTTTCCCTTACTTGGAAGGAGTTATTTCTATAAAATAAAATAAATAAGTGGGATATTAATAGTGAGTTTAAGACCATTTTTGAAATAGAGTTCTCAAGATGTTCAAGTACTTCACTGAGCTCGGTAGTGTGAGCTTGTAACCGAAGACATAAGTATTATTGAAGTGGTTGGATGTTGGTTCGGTCCACAAAGTAGGGTCTTACTAGGATAATCTCTAGCCTGCCTGTTCCAAGTAGGGAGTTAGGCCTTGGATTTTGGCAAAAGTCCAGGGTTCGCTGCCACTAAAGACCGAGGGAACCACGTGAGACTGGTTTCACAGAGGAGTGTACTCTCATCTTTACAAAAAAAAAAGTGTTTTACTTTTTTGAACAATTTAGGCGTCAGCATATAGTACACTTTGACCCTTTGAAATTTTTTAGAAATACTTTACTGTCGTGTATTTCATGATAAATTTGAACGACCTATTTAAAAAATAGAGGATAGTAAAAACAAACGGTCTTCAAAAATCATCTTTGCCACTGTCATGCATTTGAACTCACCTAGAAATGAAAACCTAATTTTGTAAATAAGTAGGATACATATTATGGAGTTGATTGCAACGTTGGCCACGATCAATTCATTCTTAGATGAGTGCAATGCTTGTAAGAAATTGTGCTATGCATGTGCATGATTCTTCTAAACACCCATTTTTAGACTCACCATATGTAGGCAAAAACTACTCGTGCGTTTGTATTTCACCATCACTGAGCCAGAGCTGAACTTAGTCTAAAGAAGTAGGCCAACGAAAAAAGATTTTTCTACAAAGACATCTTTCATTTCTTAATTATGAAGAATTTGTTTTTACTTTTAACATTCTTCAAACTTCTGCATATCTCAATCTCACATGATAACCTATCATACTCTAAAATTTTAAAAGTCAAAGAAACTTATAGTATATTGAATCTTAGATAGGTGGCTATTGTTGGATTGAAATCATTCCCTTTATGTTCTCTATTATACTCATAGGTCTTTGACCACTAGACCGATTGATTGATAATATTTAAAAGACATCCCAAATCTTACAACATTATATAAATTGCTATCCTATGATCATCACATTAGATCTAGATGTTAGATATCTTTAAGTTTTAAGTTTTTTGAATGTTTGTTTTCCAGAGCTTTAGATGGTAATTTTCTTTCTGTTGAAATATCTTCTTGAAAGAAATAGAAATATGGAGTACATCTTTAGTTCTAGACAACTTGTAGTGAGCACATAACACAAGTTTGAGCATGCTAGTTTCTCTCACATCAACAACTTGCTAAGAATAGAAGAACATGCTTTTGAGCCACTCTGCTTTTTCCACTTTTCGTCTCACATTTTATTCTGATTTTTGTAGTTTGACATTCAAATTTGATTATTTATACCTCTTTTGTGGTCAATATGGAATAAATTACATGCAAATCAGAATTTAGCTTAGAAAAGTAGAGGAACAGCTTTTTAGGGGGAGAAGAATCGAAGTTATTTTAACTTTAAGAAGGAACTCATTTTAGGAAAAATCAAATATAGATTCTTCTCTACGTAACTTTAGGGTTTTTAATAAAAGAAACTATAAGAAGATGGTTGAGGAAACTATTCTCTACAGTGGAGATTGTTCTATTGATACCCCAGTTTAATCATGATCTTTTCGGTCTTATGCAGTTGCTGGTTCTAACTTTGTTCTGTTACTTAAGAGAACATTGATGGATATCTTCGAGAAAAAAACAACCTAAAAAATCAAATATATTTGTCTAGTGTCATTTACTACTAATAGACATTGAAAACACCCTACACATAGACGTTAACATTGTGATATATTTAAAAATATTTTCACTATTTAAAATAATTTCCTTGTTTTTTAGTAATATTATTATACGTTTAATAAAGAAAATTCAATCAAACAAGATTCTAGAATCAAGGTCCCTTGTGGGCGCCTGACTTTGGGTAAATCAACAAATCATTAACATGAACTGAAGTTTACAACATTTGAAATCAAGGTCCCTAGTTGGGTTTAAGTTGTAGGTATTATTTTAAAACACTGATTAGCTGTTCAGTTAAAGAGAACAGTCAGTTGATCGATGATGGAAAAGTGTTTAATTATGAACCAACAGTAAAAAGAAAAGAAATCTTTAGGATTTTAAAAAACTTTGTAGGATTGAAGTTCCCTTTTTCTTTTTCGTGGTGAAGGTGTTGTCAAAATTTAACACTGCATGTGTAGTTGAATGCCCAATGGGCTATTGGGCTTAACAAAATAAAAATGCTATTGGGTCATATGAGGGGGATCAAACAGATCTAATAAAAAACAAACAAATAACCATTTAATCTAATTAGCATTGCTATCTACTTTCATTTTATTTTATTTTCCCTCTAGTTGGCACTCTCCTAAGTTCTAACTAGACATATTCAGCTGGCTGTTCATTTAACATACCCCATATTTATTTTCTTGCTTTAACTGAAAAACAATCAAACAGCCCTTTCACTGTCATGTGTGATTAGAGGTTGAAAACAACGAGTCCCTTTTTTCATCTGAAATTTTGATTAAGATCAAGAGAATCATTTTTTTATATTTCTTTAATTGCTGATATGATAGAAAGTTGAATGTATAATGGAGATATTATTCATGAACTTTTTGGCTTTCTTTCTTTTTTATTCAAAAGGAAAGCTAAAAGTAAAATGTTTGACTTTGTGCTGGTTAGAGGGCCCATTCAAACGGCTGAACTTGTTAATAGGAGCTACTATTTTTTTAAAAGTAAAAATTGAACTAGTCAATTGGAGCTATTGATTTTTAAAAGTAAAAAATGCTATTCTTTGATTCTTAGTTATTGGGTACTACCTTTCTTTCTTTTAACAGATTCAAAGCCTTCCGTGAGATGCAATTAACAACTCGTCAAATCTGGTGATGATTTGCATGTTAGAGAACAATATCTTTTGAAATATTTTGTGCATTCTGGGAATATCAGCATCTTAACAGAAAATATCTTTAATGACACAGCCTGTGATCTACATTTGGCCTTCTGTTCCCAATGCTTTCAAGTCCAATTTAGGCTGAAAATTTTCACACCCAGAAACCAGTTTGTAGTATTATTTTCATAATTTCAGTGGATGTCATTTTCTCTGGCAGGTTGAATGGTGGAAAAATGAAGATGGAGCACCAGAGAGTGGCCTGCCCATCGTGAGTCCTCCATGTTCAGATCTTCACATTTTTATGCTTCTGAAACACTTGATTTTTCTTTGCTTTATCCCGTTCTGA

mRNA sequence

ATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGATGAGTTCTCAGAAAGCACATTTCTTCCACCCCATTTCCAGGTTGAATGGTGGAAAAATGAAGATGGAGCACCAGAGAGTGGCCTGCCCATCGTGAGTCCTCCATGTTCAGATCTTCACATTTTTATGCTTCTGAAACACTTGATTTTTCTTTGCTTTATCCCGTTCTGA

Coding sequence (CDS)

ATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGATGAGTTCTCAGAAAGCACATTTCTTCCACCCCATTTCCAGGTTGAATGGTGGAAAAATGAAGATGGAGCACCAGAGAGTGGCCTGCCCATCGTGAGTCCTCCATGTTCAGATCTTCACATTTTTATGCTTCTGAAACACTTGATTTTTCTTTGCTTTATCCCGTTCTGA

Protein sequence

MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFMLLKHLIFLCFIPF*
Homology
[Close]
BLAST of Csa1G025910.1 vs. TrEMBL
Match: A0A0A0LPT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025910 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML 60
          MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML
Sbjct: 1  MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML 60

Query: 61 LKHLIFLCFIPF 73
          LKHLIFLCFIPF
Sbjct: 61 LKHLIFLCFIPF 72

[Close]
BLAST of Csa1G025910.1 vs. NCBI nr
Match: gi|700208814|gb|KGN63910.1| (hypothetical protein Csa_1G025910 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML 60
          MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML
Sbjct: 1  MLMEAITQIKRVKERTDEFSESTFLPPHFQVEWWKNEDGAPESGLPIVSPPCSDLHIFML 60

Query: 61 LKHLIFLCFIPF 73
          LKHLIFLCFIPF
Sbjct: 61 LKHLIFLCFIPF 72

The following BLAST results are available for this feature:
BLAST of Csa1G025910.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPT3_CUCSA2.3e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025910 PE=4 SV=1[more]
BLAST of Csa1G025910.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208814|gb|KGN63910.1|3.3e-35100.00hypothetical protein Csa_1G025910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G025910Csa1G025910gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G025910.1Csa1G025910.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G025910.1.cds2Csa1G025910.1.cds2CDS
Csa1G025910.1.cds1Csa1G025910.1.cds1CDS