Csa1G024160 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G024160
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMyb transcription factor; contains IPR009057 (Homeodomain-like)
LocationChr1 : 2406892 .. 2407988 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGGTATTTCTTAATTTATTGGGTAATAATTAAGTAAAAACTAAATTAATTTGGATGTGTTAATTAATTAATTAAAATATTATTACTCTGGGTTTTAATGTAATTTAAATTTGATAGGGCTTAGAAGGACAGGGAAGAGTTGTAGACTGAGATGGCTTAATTATCTAAAACCTGAAGTGAAGAGAGGAAATCTTTCTCCACAAGAACAGCTTTTGATTCTTGACCTTCATTCCAGATGGGGCAATAGGTAATTTTCGTTACACCATATATATAGCTATCACGAATCATCTCAAGTTTTCCAAAAGAGATCAAACAACCATATATAGCAATTGGTCTCTTGTATTAAAAAAAGCCAAAACTTTATGCTATTATTGAACTCTCTTTGATTATGATTAGGTGGTCAAAAATTGCACAGCAATTACCGGGAAGAACGGACAATGAAATAAAAAACTACTGGAGAACCAAAGTGCAAAAACAAGCAAAGATTCTCAACATCAGCACCAATAGCCCAGAATTCAAAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

mRNA sequence

ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGGGCTTAGAAGGACAGGGAAGAGTTATGGGGCAATAGGTAATTTTCGTTACACCATATATATAGCTATCACGAATCATCTCAAGTTTTCCAAAAGAGATCAAACAACCATATATAGCAATTGGTCTCTTATTCTCAACATCAGCACCAATAGCCCAGAATTCAAAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

Coding sequence (CDS)

ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGGGCTTAGAAGGACAGGGAAGAGTTATGGGGCAATAGGTAATTTTCGTTACACCATATATATAGCTATCACGAATCATCTCAAGTTTTCCAAAAGAGATCAAACAACCATATATAGCAATTGGTCTCTTATTCTCAACATCAGCACCAATAGCCCAGAATTCAAAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

Protein sequence

MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF*
Homology
[Close]
BLAST of Csa1G024160 vs. Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-09
Identity = 68/250 (27.20%), Postives = 105/250 (42.00%), Query Frame = 1 

Query: 17  SSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGA 76
           SS GS S  E +    VR+GPW+++ED +LI+ I+ HG+G WN LA  +GL+RTGKS   
Sbjct: 8   SSGGSGSSAEAE----VRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSC-- 67

Query: 77  IGNFRYTIYI-AITNHLKFSKRDQTTIY-------SNWSLILNISTNSPEFKD-IINRFW 136
               R+  Y+         +  +Q  I        + WS    I+ + P   D  I  FW
Sbjct: 68  --RLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWS---KIAKHLPGRTDNEIKNFW 127

Query: 137 IPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVE 196
             R+   I  S  +++S      +  +H + + +D              +  STSS +V 
Sbjct: 128 RTRIQKYIKQSDVTTTS------SVGSHHSSEIND--------------QAASTSSHNVF 187

Query: 197 IS--QVSDPFSDVPS--------WNYGGGETAA--ANFEYTIGDSLLQHTDWIDDDDSFN 246
            +  Q  + +S  P+        +NYG    AA  A  +Y +  ++         DD   
Sbjct: 188 CTQDQAMETYSPTPTSYQHTNMEFNYGNYSAAAVTATVDYPVPMTV---------DDQTG 217

[Close]
BLAST of Csa1G024160 vs. Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-08
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 

Query: 27 DDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKS 74
          + Q   VR+GPW+++ED +LI+ I+ HGEG WN LA  +GL+RTGKS
Sbjct: 7  NSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKS 53

[Close]
BLAST of Csa1G024160 vs. Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 33 VRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKS 74
          VR+GPW+++ED +LI+ IS HGEG WN +A  +GL+RTGKS
Sbjct: 13 VRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKS 53

[Close]
BLAST of Csa1G024160 vs. Swiss-Prot
Match: MYB24_ARATH (Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 33 VRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKS 74
          VR+GPW+++ED +LI+ I+ HGEG WN LA  +GL+RTGKS
Sbjct: 17 VRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKS 57

[Close]
BLAST of Csa1G024160 vs. Swiss-Prot
Match: MYB57_ARATH (Transcription factor MYB57 OS=Arabidopsis thaliana GN=MYB57 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-07
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 

Query: 26 EDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKS 74
          + ++   VR+GPW+++ED +L + I  HGEG WN +A  SGL+RTGKS
Sbjct: 18 QKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKS 65

[Close]
BLAST of Csa1G024160 vs. TrEMBL
Match: A0A0A0LPL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024160 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 4.6e-144
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 

Query: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120
           LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK
Sbjct: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120

Query: 121 DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS 180
           DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS
Sbjct: 121 DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS 180

Query: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240
           TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN
Sbjct: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240

Query: 241 FDGLWQF 248
           FDGLWQF
Sbjct: 241 FDGLWQF 247

[Close]
BLAST of Csa1G024160 vs. TAIR10
Match: AT1G25340.1 (AT1G25340.1 myb domain protein 116)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-15
Identity = 76/278 (27.34%), Postives = 113/278 (40.65%), Query Frame = 1 

Query: 27  DDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGAIGNFRYTIYI 86
           +++    R+GPW+++ED+LL + IS +GEGRWNLLA  SGL+R GKS       R+  Y+
Sbjct: 12  NEEGAEQRKGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRAGKSC----RLRWLNYL 71

Query: 87  -AITNHLKFSKRDQTTIY-------SNWSLI--------------------------LNI 146
                    + ++Q  I        + WS I                          LNI
Sbjct: 72  KPDIKRGNLTPQEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQKQARQLNI 131

Query: 147 STNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGK 206
            +NS +F +++  FW PRL+++I D+S +++     P        P   DS  L    G 
Sbjct: 132 DSNSHKFIEVVRSFWFPRLINEIKDNSYTNNIKANAPDLLG----PILRDSKDL----GF 191

Query: 207 RRHFEQNSTSSESVEISQVSDPFSDVPS-----WNYGGGETAAANF---------EYTI- 248
                  S S +  + SQ  D FSD+ +      + GG     +           EY + 
Sbjct: 192 NNMDCSTSMSEDLKKTSQFMD-FSDLETTMSLEGSRGGSSQCVSEVYSSFPCLEEEYMVA 251

[Close]
BLAST of Csa1G024160 vs. TAIR10
Match: AT1G48000.1 (AT1G48000.1 myb domain protein 112)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 52/174 (29.89%), Postives = 78/174 (44.83%), Query Frame = 1 

Query: 25  IEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGA--IGNFRY 84
           +E      +RRGPW+V+ED  L+  IS+HGEGRWN L+  +GL RTGKS     +   R 
Sbjct: 24  VEKKMEIEIRRGPWTVEEDMKLVSYISLHGEGRWNSLSRSAGLNRTGKSCRLRWLNYLRP 83

Query: 85  TI----------YIAITNHLKFSK-----------RDQTTIYSNW-------SLILNIST 144
            I          +I +  H ++             R    I + W       + +L    
Sbjct: 84  DIRRGDISLQEQFIILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKLLKCDV 143

Query: 145 NSPEFKDIINRFWIPRLLHQI--NDSSSSSSSPPPPPHTAATHPTPQFSDSDSL 167
           NS +FKD I   W+PRL+ +I    S   +S+   P +++    T   S S+++
Sbjct: 144 NSKQFKDTIKHLWMPRLIERIAATQSVQFTSNHYSPENSSVATATSSTSSSEAV 197

[Close]
BLAST of Csa1G024160 vs. TAIR10
Match: AT1G68320.1 (AT1G68320.1 myb domain protein 62)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-13
Identity = 52/175 (29.71%), Postives = 82/175 (46.86%), Query Frame = 1 

Query: 26  EDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGAIGNFRYTIY 85
           ++ + E +RRGPW+++ED+LL + I  +GEGRWN +A  +GL+RTGKS       R+  Y
Sbjct: 12  KESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSC----RLRWLNY 71

Query: 86  I-AITNHLKFSKRDQTTIY-------SNWSLI--------------------------LN 145
           +         + ++Q  I        + WS I                          LN
Sbjct: 72  LKPDIRRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQARQLN 131

Query: 146 ISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSL 167
           I +NS +F D +  FW+PRL+ ++  +SS          T  T+  PQ ++++SL
Sbjct: 132 IESNSDKFFDAVRSFWVPRLIEKMEQNSS----------TTTTYCCPQNNNNNSL 172

[Close]
BLAST of Csa1G024160 vs. TAIR10
Match: AT2G47190.1 (AT2G47190.1 myb domain protein 2)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-12
Identity = 70/266 (26.32%), Postives = 109/266 (40.98%), Query Frame = 1 

Query: 28  DQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGAIGNFRYTIYIA 87
           ++   VR+GPW+ +ED++L++ +S+HG+ RWN +A  SGL+RTGKS       R+  Y+ 
Sbjct: 15  EEDSDVRKGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTGKSC----RLRWLNYLR 74

Query: 88  -------ITNHLKFSKRDQTTIYSN-WSLI--------------------------LNIS 147
                  IT   +F      +++ N WS I                          L   
Sbjct: 75  PDVRRGNITLEEQFMILKLHSLWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQAKHLRCD 134

Query: 148 TNSPEFKDIINRFWIPRLLHQINDSSSSSS-----SPPPPPHTAATHPTP------QFSD 207
            NS  FK+ +   W+PRL+ +IN  S  ++     S    P      P+P      QFS 
Sbjct: 135 VNSNLFKETMRNVWMPRLVERINAQSLPTTCEQVESMITDPSQPVNEPSPVEPGFVQFSQ 194

Query: 208 S---DSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGD 246
           +     +PA        E ++TSS S      ++ FSDV      GG    + ++ +   
Sbjct: 195 NHHQQFVPAT-------ELSATSSNS-----PAETFSDV-----RGGVVNGSGYDPSGQT 250

[Close]
BLAST of Csa1G024160 vs. TAIR10
Match: AT3G27810.1 (AT3G27810.1 myb domain protein 21)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 68/250 (27.20%), Postives = 105/250 (42.00%), Query Frame = 1 

Query: 17  SSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGA 76
           SS GS S  E +    VR+GPW+++ED +LI+ I+ HG+G WN LA  +GL+RTGKS   
Sbjct: 8   SSGGSGSSAEAE----VRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSC-- 67

Query: 77  IGNFRYTIYI-AITNHLKFSKRDQTTIY-------SNWSLILNISTNSPEFKD-IINRFW 136
               R+  Y+         +  +Q  I        + WS    I+ + P   D  I  FW
Sbjct: 68  --RLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWS---KIAKHLPGRTDNEIKNFW 127

Query: 137 IPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVE 196
             R+   I  S  +++S      +  +H + + +D              +  STSS +V 
Sbjct: 128 RTRIQKYIKQSDVTTTS------SVGSHHSSEIND--------------QAASTSSHNVF 187

Query: 197 IS--QVSDPFSDVPS--------WNYGGGETAA--ANFEYTIGDSLLQHTDWIDDDDSFN 246
            +  Q  + +S  P+        +NYG    AA  A  +Y +  ++         DD   
Sbjct: 188 CTQDQAMETYSPTPTSYQHTNMEFNYGNYSAAAVTATVDYPVPMTV---------DDQTG 217

[Close]
BLAST of Csa1G024160 vs. NCBI nr
Match: gi|700208734|gb|KGN63830.1| (hypothetical protein Csa_1G024160 [Cucumis sativus])

HSP 1 Score: 518.5 bits (1334), Expect = 6.6e-144
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 

Query: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120
           LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK
Sbjct: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120

Query: 121 DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS 180
           DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS
Sbjct: 121 DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS 180

Query: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240
           TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN
Sbjct: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240

Query: 241 FDGLWQF 248
           FDGLWQF
Sbjct: 241 FDGLWQF 247

[Close]
BLAST of Csa1G024160 vs. NCBI nr
Match: gi|449439539|ref|XP_004137543.1| (PREDICTED: myb-related protein 305-like [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 3.4e-116
Identity = 218/277 (78.70%), Postives = 227/277 (81.95%), Query Frame = 1 

Query: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLRRTGKS--------------YGAIGNFRYTIYIAITNHL--KFSK-------R 120
           LAIRSGLRRTGKS               G +      + + + +    ++SK       R
Sbjct: 61  LAIRSGLRRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGR 120

Query: 121 DQTTIYSNW-------SLILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPH 180
               I + W       + ILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPH
Sbjct: 121 TDNEIKNYWRTKVQKQAKILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPH 180

Query: 181 TAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA 240
           TAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA
Sbjct: 181 TAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA 240

Query: 241 ANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 248
           ANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF
Sbjct: 241 ANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 277

[Close]
BLAST of Csa1G024160 vs. NCBI nr
Match: gi|659106715|ref|XP_008453409.1| (PREDICTED: transcription factor MYB24-like [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 1.1e-101
Identity = 202/281 (71.89%), Postives = 209/281 (74.38%), Query Frame = 1 

Query: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPSPSPSPS  SSGS SFIEDDQSE VRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPS--SSGSSSFIEDDQSE-VRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLRRTGKSYGAIGNFRYTIYI-AITNHLKFSKRDQTTI---YSNW---------- 120
           LAIRSGLRRTGKS       R+  Y+         S ++Q  I   +S W          
Sbjct: 61  LAIRSGLRRTGKSC----RLRWLNYLKPEVRRGNLSPQEQLLILDLHSRWGNRWSKIAQQ 120

Query: 121 --------------------SLILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPP 180
                               + ILNI TNSPEFKDIINR WIPRLLHQINDSSS     P
Sbjct: 121 LPGRTDNEIKNYWRTKVQKQAKILNIGTNSPEFKDIINRLWIPRLLHQINDSSS-----P 180

Query: 181 PPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGG 240
           PPPHTA THPTPQFSDSDSLP  DG RRHFEQNSTSSESVEISQVSDPFSDVPSWN+GGG
Sbjct: 181 PPPHTATTHPTPQFSDSDSLPTVDGNRRHFEQNSTSSESVEISQVSDPFSDVPSWNHGGG 240

Query: 241 ETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 248
           ETAAANFEYT GDSLLQHTDWIDDDDSFNGCLWNFDGLWQF
Sbjct: 241 ETAAANFEYTTGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 269

[Close]
BLAST of Csa1G024160 vs. NCBI nr
Match: gi|700209027|gb|KGN64123.1| (hypothetical protein Csa_1G042350 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 5.6e-26
Identity = 93/261 (35.63%), Postives = 124/261 (47.51%), Query Frame = 1 

Query: 13  SPSPSSSGSYSFIEDDQSE---AVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRR 72
           S SP S  S S IEDD S     +RRGPW+++ED+LLIHSIS HGEGRWNLLA RSGLRR
Sbjct: 3   SSSPKSFSSCSEIEDDNSSNGNELRRGPWTLEEDNLLIHSISTHGEGRWNLLAKRSGLRR 62

Query: 73  TGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNIST---NSPEFKDIINRF 132
           TGKS            +   N+LK   +          LIL++ +   NS  F+ II  +
Sbjct: 63  TGKS----------CRLRWLNYLKPDVKRGNLSAQEQLLILDLHSKWGNSEAFQQIIRSY 122

Query: 133 WIPRLLHQINDSSSSSSSPPPPPHTAA------THPTPQFSDSDSLPAADGKRRHFEQNS 192
           W+PRLL +IN S  S      PP  A+        PT   +   ++            + 
Sbjct: 123 WMPRLLQKINQSPPSELPITSPPEMASQTSFGFEAPTTAVTQPPAMTPLQIGGDLMGSSC 182

Query: 193 TSSESVEISQVSDPFSDVP-------SWNYGGGE-------TAAANFEYTIGDSLLQHTD 248
           TSS+  +IS   +  +  P          +GGGE         A +  Y +    +   +
Sbjct: 183 TSSQITQISSYQNYENYAPFVKDYCHDGGHGGGEMLNWTTTAVAGDSGYPVSHCHVAENN 242

[Close]
BLAST of Csa1G024160 vs. NCBI nr
Match: gi|449439407|ref|XP_004137477.1| (PREDICTED: transcription factor MYB108-like [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 99/288 (34.38%), Postives = 129/288 (44.79%), Query Frame = 1 

Query: 13  SPSPSSSGSYSFIEDDQSE---AVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRR 72
           S SP S  S S IEDD S     +RRGPW+++ED+LLIHSIS HGEGRWNLLA RSGLRR
Sbjct: 3   SSSPKSFSSCSEIEDDNSSNGNELRRGPWTLEEDNLLIHSISTHGEGRWNLLAKRSGLRR 62

Query: 73  TGKSYG-----------AIGNFRYTIYIAITN-HLKFSK-----------RDQTTIYSNW 132
           TGKS               GN      + I + H K+             R    I + W
Sbjct: 63  TGKSCRLRWLNYLKPDVKRGNLSAQEQLLILDLHSKWGNRWSKIAQHLPGRTDNEIKNYW 122

Query: 133 -------SLILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAA------ 192
                  +  LNI TNS  F+ II  +W+PRLL +IN S  S      PP  A+      
Sbjct: 123 RTRVQKQARHLNIDTNSEAFQQIIRSYWMPRLLQKINQSPPSELPITSPPEMASQTSFGF 182

Query: 193 THPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVP-------SWNYGGG 248
             PT   +   ++            + TSS+  +IS   +  +  P          +GGG
Sbjct: 183 EAPTTAVTQPPAMTPLQIGGDLMGSSCTSSQITQISSYQNYENYAPFVKDYCHDGGHGGG 242

The following BLAST results are available for this feature:
BLAST of Csa1G024160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYB21_ARATH4.7e-0927.20Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1[more]
MYB05_ANTMA9.0e-0855.32Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1[more]
MYB40_ANTMA1.2e-0760.98Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1[more]
MYB24_ARATH2.0e-0760.98Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1[more]
MYB57_ARATH4.4e-0750.00Transcription factor MYB57 OS=Arabidopsis thaliana GN=MYB57 PE=2 SV=1[more]
BLAST of Csa1G024160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPL1_CUCSA4.6e-144100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024160 PE=4 SV=1[more]
BLAST of Csa1G024160 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G25340.13.6e-1527.34 myb domain protein 116[more]
AT1G48000.11.5e-1329.89 myb domain protein 112[more]
AT1G68320.13.4e-1329.71 myb domain protein 62[more]
AT2G47190.14.9e-1226.32 myb domain protein 2[more]
AT3G27810.12.7e-1027.20 myb domain protein 21[more]
BLAST of Csa1G024160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208734|gb|KGN63830.1|6.6e-144100.00hypothetical protein Csa_1G024160 [Cucumis sativus][more]
gi|449439539|ref|XP_004137543.1|3.4e-11678.70PREDICTED: myb-related protein 305-like [Cucumis sativus][more]
gi|659106715|ref|XP_008453409.1|1.1e-10171.89PREDICTED: transcription factor MYB24-like [Cucumis melo][more]
gi|700209027|gb|KGN64123.1|5.6e-2635.63hypothetical protein Csa_1G042350 [Cucumis sativus][more]
gi|449439407|ref|XP_004137477.1|2.1e-2534.38PREDICTED: transcription factor MYB108-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017877Myb-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G024160.1Csa1G024160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 35..73
score: 2.
IPR001005SANT/Myb domainSMARTSM00717santcoord: 34..87
score: 0.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 29..73
score: 9.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 32..72
score: 6.2
IPR017877Myb-like domainPROFILEPS50090MYB_LIKEcoord: 30..73
score: 7
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 6..73
score: 2.2
NoneNo IPR availablePANTHERPTHR10641:SF494TRANSCRIPTION FACTOR MYB108coord: 6..73
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G024160Cla018967Watermelon (97103) v1cuwmB095
Csa1G024160Cla018501Watermelon (97103) v1cuwmB063
Csa1G024160MELO3C002090Melon (DHL92) v3.5.1cumeB033
Csa1G024160ClCG04G011090Watermelon (Charleston Gray)cuwcgB058
Csa1G024160ClCG06G014730Watermelon (Charleston Gray)cuwcgB082
Csa1G024160Lsi06G013250Bottle gourd (USVL1VR-Ls)culsiB071
Csa1G024160Lsi02G001830Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G024160MELO3C002090.2Melon (DHL92) v3.6.1cumedB028
Csa1G024160MELO3C017315.2Melon (DHL92) v3.6.1cumedB047
Csa1G024160Cla97C04G077960Watermelon (97103) v2cuwmbB055
Csa1G024160Cla97C06G124240Watermelon (97103) v2cuwmbB079
Csa1G024160Bhi01G002693Wax gourdcuwgoB012
Csa1G024160Bhi08G001023Wax gourdcuwgoB040
Csa1G024160CSPI01G03900Wild cucumber (PI 183967)cpicuB000
Csa1G024160CSPI01G06790Wild cucumber (PI 183967)cpicuB003
Csa1G024160Cucsa.111120Cucumber (Gy14) v1cgycuB137
Csa1G024160Cucsa.121500Cucumber (Gy14) v1cgycuB160
Csa1G024160CmaCh11G002800Cucurbita maxima (Rimu)cmacuB087
Csa1G024160CmaCh13G010220Cucurbita maxima (Rimu)cmacuB221
Csa1G024160CmoCh11G002830Cucurbita moschata (Rifu)cmocuB076
Csa1G024160CmoCh13G010630Cucurbita moschata (Rifu)cmocuB207
Csa1G024160Cp4.1LG04g14120Cucurbita pepo (Zucchini)cpecuB654
Csa1G024160Cp4.1LG20g01300Cucurbita pepo (Zucchini)cpecuB509
Csa1G024160CsGy1G003820Cucumber (Gy14) v2cgybcuB001
Csa1G024160CsGy1G006530Cucumber (Gy14) v2cgybcuB005
Csa1G024160Carg09135Silver-seed gourdcarcuB0622
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa1G024160Csa1G042350Cucumber (Chinese Long) v2cucuB000
The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G024160Watermelon (97103) v2cuwmbB061
Csa1G024160Wax gourdcuwgoB071
Csa1G024160Cucumber (Chinese Long) v2cucuB030
Csa1G024160Cucumber (Gy14) v1cgycuB405
Csa1G024160Cucurbita maxima (Rimu)cmacuB393
Csa1G024160Cucurbita maxima (Rimu)cmacuB404
Csa1G024160Cucurbita maxima (Rimu)cmacuB686
Csa1G024160Cucurbita moschata (Rifu)cmocuB389
Csa1G024160Cucurbita moschata (Rifu)cmocuB679
Csa1G024160Melon (DHL92) v3.5.1cumeB010
Csa1G024160Melon (DHL92) v3.5.1cumeB055
Csa1G024160Watermelon (Charleston Gray)cuwcgB063
Csa1G024160Watermelon (97103) v1cuwmB039
Csa1G024160Cucurbita pepo (Zucchini)cpecuB024
Csa1G024160Cucurbita pepo (Zucchini)cpecuB031
Csa1G024160Cucurbita pepo (Zucchini)cpecuB381
Csa1G024160Bottle gourd (USVL1VR-Ls)culsiB054
Csa1G024160Cucumber (Gy14) v2cgybcuB196
Csa1G024160Melon (DHL92) v3.6.1cumedB005
Csa1G024160Silver-seed gourdcarcuB0416
Csa1G024160Silver-seed gourdcarcuB0543
Csa1G024160Silver-seed gourdcarcuB0856