CsGy1G003820 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G003820
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transcription factor MYB24-like
Location	Chr1 : 2404434 .. 2405530 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGGTATTTCTTAATTTATTGGGTAATAATTAAGTAAAAACTAAATTAATTTGGATGTGTTAATTAATTAATTAAAATATTATTACTCTGGGTTTTAATGTAATTTAAATTTGATAGGGCTTAGAAGGACAGGGAAGAGTTGTAGACTGAGATGGCTTAATTATCTAAAACCTGAAGTGAAGAGAGGAAATCTTTCTCCACAAGAACAGCTTTTGATTCTTGACCTTCATTCCAGATGGGGCAATAGGTAATTTTCGTTACACCATATATATAGCTATCACGAATCATCTCAAGTTTTCCAAAAGAGATAAAACAACCATATATAGCAATTGGTCTCTTGTATTAAAAAAAGCCAAAACTTTATGCTATTATTGAACTCTCTTTGATTATGATTAGGTGGTCAAAAATTGCACAGCAATTACCGGGAAGAACGGACAATGAAATAAAAAACTACTGGAGAACCAAAGTGCAAAAACAAGCAAAGATTCTCAACATCAGCACCAATAGCCCAGAATTCAAAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

mRNA sequence

ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

Coding sequence (CDS)

ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

Protein sequence

MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF

Homology

[Close]

BLAST of CsGy1G003820 vs. NCBI nr
Match: KGN63830.1 (hypothetical protein Csa_1G024160 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 3.3e-78
Identity = 192/247 (77.73%), Postives = 192/247 (77.73%), Query Frame = 0


Query: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRS------------------------------------------------------- 120
           LAIRS                                                       
Sbjct: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120

Query: 121 DIINRFWIPRLLHQINXXXXXXXXXXXXXXXXXTHPTPQFSDSDSLPAADGKRRHFEQNS 180
           DIINRFWIPRLLHQINXXXXXXXXXXXXXXXXXTHPTPQFSDSDSLPAADGKRRHFEQNS
Sbjct: 121 DIINRFWIPRLLHQINXXXXXXXXXXXXXXXXXTHPTPQFSDSDSLPAADGKRRHFEQNS 180

Query: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 193
           TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN
Sbjct: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240

[Close]

BLAST of CsGy1G003820 vs. NCBI nr
Match: XP_004137543.1 (PREDICTED: myb-related protein 305-like [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 9.8e-75
Identity = 192/277 (69.31%), Postives = 192/277 (69.31%), Query Frame = 0


Query: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRS------------------------------------------------------- 120
           LAIRS                                                       
Sbjct: 61  LAIRSGLRRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGR 120

Query: 121 ------------------------------DIINRFWIPRLLHQINXXXXXXXXXXXXXX 180
                                         DIINRFWIPRLLHQINXXXXXXXXXXXXXX
Sbjct: 121 TDNEIKNYWRTKVQKQAKILNISTNSPEFKDIINRFWIPRLLHQINXXXXXXXXXXXXXX 180

Query: 181 XXXTHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA 193
           XXXTHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA
Sbjct: 181 XXXTHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA 240

[Close]

BLAST of CsGy1G003820 vs. NCBI nr
Match: XP_008453409.1 (PREDICTED: transcription factor MYB24-like [Cucumis melo])

HSP 1 Score: 260.4 bits (664), Expect = 4.9e-66
Identity = 169/277 (61.01%), Postives = 170/277 (61.37%), Query Frame = 0


Query: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKN  XXXXXXXXXXXXXX IEDDQSE VRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKN--XXXXXXXXXXXXXXFIEDDQSE-VRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRS------------------------------------------------------- 120
           LAIRS                                                       
Sbjct: 61  LAIRSGLRRTGKSCRLRWLNYLKPEVRRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGR 120

Query: 121 ------------------------------DIINRFWIPRLLHQINXXXXXXXXXXXXXX 180
                                         DIINR WIPRLLHQIN         XXXX 
Sbjct: 121 TDNEIKNYWRTKVQKQAKILNIGTNSPEFKDIINRLWIPRLLHQIN-----DSSSXXXXH 180

Query: 181 XXXTHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA 193
              THPTPQFSDSDSLP  DG RRHFEQNSTSSESVEISQVSDPFSDVPSWN+GGGETAA
Sbjct: 181 TATTHPTPQFSDSDSLPTVDGNRRHFEQNSTSSESVEISQVSDPFSDVPSWNHGGGETAA 240

[Close]

BLAST of CsGy1G003820 vs. NCBI nr
Match: XP_023531056.1 (transcription factor JAMYB-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.5 bits (493), Expect = 3.3e-46
Identity = 147/282 (52.13%), Postives = 163/282 (57.80%), Query Frame = 0


Query: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCK+      XXXXXXXXXXX+ +D    +RRGPW+VDEDSLL+HSISVHGEGRWNL
Sbjct: 1   MASPCKS-----QXXXXXXXXXXXVVEDNQNGLRRGPWTVDEDSLLVHSISVHGEGRWNL 60

Query: 61  LAIRS------------------------------------------------------- 120
           LAIRS                                                       
Sbjct: 61  LAIRSGLRRTGKSCRLRWLNYLKPDVIRGNLSPQEQLLILDLHSRWGNRWSKIAQHLPGR 120

Query: 121 ------------------------------DIINRFWIPRLLHQIN---XXXXXXXXXXX 180
                                         +IINRFWIPRL+ QIN   XXXXXXXXXXX
Sbjct: 121 TDNEIKNYWRTRVQKQAKLLNIDTNSSEFKEIINRFWIPRLVQQINESXXXXXXXXXXXX 180

Query: 181 XXXXXXTHPTPQFSDSDSLPAADGKRRHF--EQNSTSSESVEISQVSDPFSDVPSWNYGG 193
           XXXXXX  P  Q SD+D+LPAADGKRRHF  EQNSTSSES++ISQVSDPFSDVPSWN+ G
Sbjct: 181 XXXXXXARPASQLSDTDTLPAADGKRRHFDTEQNSTSSESMDISQVSDPFSDVPSWNH-G 240

[Close]

BLAST of CsGy1G003820 vs. NCBI nr
Match: XP_022926469.1 (transcription factor JAMYB-like [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 4.3e-46
Identity = 152/283 (53.71%), Postives = 167/283 (59.01%), Query Frame = 0


Query: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCK   XXXXXXXXXXXXXXX+ +D    +RRGPW+VDEDSLL+HSISVHGEGRWNL
Sbjct: 7   MASPCK---XXXXXXXXXXXXXXXVVEDTQNGLRRGPWTVDEDSLLVHSISVHGEGRWNL 66

Query: 61  LAIRS------------------------------------------------------- 120
           LAIRS                                                       
Sbjct: 67  LAIRSGLRRTGKSCRLRWLNYLKPDVKRGNLSPQEQLLILDLHSRWGNRWSKIAQHLPGR 126

Query: 121 ------------------------------DIINRFWIPRLLHQIN----XXXXXXXXXX 180
                                         +IINRFWIPRL+ QIN    XXXXXXXXXX
Sbjct: 127 TDNEIKNYWRTRVQKQAKLLNIDTNSSEFKEIINRFWIPRLVQQINEXXXXXXXXXXXXX 186

Query: 181 XXXXXXXTHPTPQFSDSDSLPAADGKRRHF--EQNSTSSESVEISQVSDPFSDVPSWNYG 193
           XXXXXXX  P  Q SD+D+LPAADGKRRHF  EQNSTSSES++ISQVSDPFSDVPSWN+ 
Sbjct: 187 XXXXXXXXRPASQLSDADTLPAADGKRRHFDTEQNSTSSESMDISQVSDPFSDVPSWNH- 246

[Close]

BLAST of CsGy1G003820 vs. TAIR10
Match: AT1G48000.1 (myb domain protein 112)

HSP 1 Score: 52.8 bits (125), Expect = 2.8e-07
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 25 IEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSDIINR 71
          +E      +RRGPW+V+ED  L+  IS+HGEGRWN L+ RS  +NR
Sbjct: 24 VEKKMEIEIRRGPWTVEEDMKLVSYISLHGEGRWNSLS-RSAGLNR 68

[Close]

BLAST of CsGy1G003820 vs. TAIR10
Match: AT5G49620.2 (myb domain protein 78)

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 33 VRRGPWSVDEDSLLIHSISVHGEGRWNLLA 63
          VRRGPW+V+ED  LI+ I+ HGEGRWN LA
Sbjct: 26 VRRGPWTVEEDLELINYIASHGEGRWNSLA 55

[Close]

BLAST of CsGy1G003820 vs. TAIR10
Match: AT1G25340.1 (myb domain protein 116)

HSP 1 Score: 48.9 bits (115), Expect = 4.0e-06
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 27 DDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSDI 68
          +++    R+GPW+++ED+LL + IS +GEGRWNLLA  S +
Sbjct: 12 NEEGAEQRKGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGL 52

[Close]

BLAST of CsGy1G003820 vs. TAIR10
Match: AT2G47190.1 (myb domain protein 2)

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-06
Identity = 16/40 (40.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 28 DQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSDI 68
          ++   VR+GPW+ +ED++L++ +S+HG+ RWN +A  S +
Sbjct: 15 EEDSDVRKGPWTEEEDAILVNFVSIHGDARWNHIARSSGL 54

[Close]

BLAST of CsGy1G003820 vs. TAIR10
Match: AT3G24310.1 (myb domain protein 305)

HSP 1 Score: 47.8 bits (112), Expect = 9.0e-06
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 31 EAVRRGPWSVDEDSLLIHSISVHGEGRWNLLA 63
          E  R+GPW+ +ED LLI  + +HGEGRWN +A
Sbjct: 16 EGWRKGPWTAEEDRLLIDYVQLHGEGRWNSVA 47

[Close]

BLAST of CsGy1G003820 vs. Swiss-Prot
Match: sp|Q2QZJ8|JAMYB_ORYSJ (Transcription factor JAMYB OS=Oryza sativa subsp. japonica OX=39947 GN=JAMYB PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-06
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 30 SEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLA 63
          S  +RRGPW+VDED  LI+ IS HGEGRWN LA
Sbjct: 26 SAELRRGPWTVDEDLTLINYISDHGEGRWNALA 58

[Close]

BLAST of CsGy1G003820 vs. Swiss-Prot
Match: sp|Q10MB4|MYB2_ORYSJ (Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 33 VRRGPWSVDEDSLLIHSISVHGEGRWNLLA 63
          +RRGPW+V+ED LL++ I+ HGEGRWN LA
Sbjct: 20 LRRGPWTVEEDLLLVNYIAAHGEGRWNSLA 49

[Close]

BLAST of CsGy1G003820 vs. Swiss-Prot
Match: sp|Q9FGY3|MYB78_ARATH (Transcription factor MYB78 OS=Arabidopsis thaliana OX=3702 GN=MYB78 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.3e-05
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 33 VRRGPWSVDEDSLLIHSISVHGEGRWNLLA 63
          VRRGPW+V+ED  LI+ I+ HGEGRWN LA
Sbjct: 26 VRRGPWTVEEDLELINYIASHGEGRWNSLA 55

[Close]

BLAST of CsGy1G003820 vs. Swiss-Prot
Match: sp|P81391|MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus OX=4151 GN=MYB305 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.8e-04
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 27 DDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLA 63
          + Q   VR+GPW+++ED +LI+ I+ HGEG WN LA
Sbjct: 7  NSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLA 42

[Close]

BLAST of CsGy1G003820 vs. Swiss-Prot
Match: sp|P81396|MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus OX=4151 GN=MYB340 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.6e-04
Identity = 18/30 (60.00%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 33 VRRGPWSVDEDSLLIHSISVHGEGRWNLLA 63
          VR+GPW+++ED +LI+ IS HGEG WN +A
Sbjct: 13 VRKGPWTMEEDLILINFISNHGEGVWNTIA 42

[Close]

BLAST of CsGy1G003820 vs. TrEMBL
Match: tr|A0A0A0LPL1|A0A0A0LPL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024160 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 2.2e-78
Identity = 192/247 (77.73%), Postives = 192/247 (77.73%), Query Frame = 0


Query: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRS------------------------------------------------------- 120
           LAIRS                                                       
Sbjct: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120

Query: 121 DIINRFWIPRLLHQINXXXXXXXXXXXXXXXXXTHPTPQFSDSDSLPAADGKRRHFEQNS 180
           DIINRFWIPRLLHQINXXXXXXXXXXXXXXXXXTHPTPQFSDSDSLPAADGKRRHFEQNS
Sbjct: 121 DIINRFWIPRLLHQINXXXXXXXXXXXXXXXXXTHPTPQFSDSDSLPAADGKRRHFEQNS 180

Query: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 193
           TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN
Sbjct: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240

[Close]

BLAST of CsGy1G003820 vs. TrEMBL
Match: tr|A0A1S3BWZ6|A0A1S3BWZ6_CUCME (transcription factor MYB24-like OS=Cucumis melo OX=3656 GN=LOC103494131 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.2e-66
Identity = 169/277 (61.01%), Postives = 170/277 (61.37%), Query Frame = 0


Query: 1   MASPCKNPXXXXXXXXXXXXXXXXIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKN  XXXXXXXXXXXXXX IEDDQSE VRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKN--XXXXXXXXXXXXXXFIEDDQSE-VRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRS------------------------------------------------------- 120
           LAIRS                                                       
Sbjct: 61  LAIRSGLRRTGKSCRLRWLNYLKPEVRRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGR 120

Query: 121 ------------------------------DIINRFWIPRLLHQINXXXXXXXXXXXXXX 180
                                         DIINR WIPRLLHQIN         XXXX 
Sbjct: 121 TDNEIKNYWRTKVQKQAKILNIGTNSPEFKDIINRLWIPRLLHQIN-----DSSSXXXXH 180

Query: 181 XXXTHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA 193
              THPTPQFSDSDSLP  DG RRHFEQNSTSSESVEISQVSDPFSDVPSWN+GGGETAA
Sbjct: 181 TATTHPTPQFSDSDSLPTVDGNRRHFEQNSTSSESVEISQVSDPFSDVPSWNHGGGETAA 240

[Close]

BLAST of CsGy1G003820 vs. TrEMBL
Match: tr|A0A1S3C8F6|A0A1S3C8F6_CUCME (transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103497816 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 25 IEDDQS---EAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSDI 68
          IEDD S     +RRGPW+++ED+LLIHSIS+HGEGRWNLLA RS +
Sbjct: 15 IEDDNSNNGNELRRGPWTLEEDNLLIHSISLHGEGRWNLLAKRSGL 60

[Close]

BLAST of CsGy1G003820 vs. TrEMBL
Match: tr|A0A0A0LQS6|A0A0A0LQS6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042350 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.0e-08
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 25 IEDDQS---EAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSDI 68
          IEDD S     +RRGPW+++ED+LLIHSIS HGEGRWNLLA RS +
Sbjct: 15 IEDDNSSNGNELRRGPWTLEEDNLLIHSISTHGEGRWNLLAKRSGL 60

[Close]

BLAST of CsGy1G003820 vs. TrEMBL
Match: tr|A0A1R3KMZ8|A0A1R3KMZ8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06458 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 27 DDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSDIINRFWIPRLLHQI 81
          +D+SE +RRGPW+++ED+LL H I+ HGEGRWN+LA     +  FW+PRLL ++
Sbjct: 21 EDESE-LRRGPWTLEEDTLLTHYIARHGEGRWNMLA--KCAVRCFWMPRLLQKV 71

The following BLAST results are available for this feature:

BLAST of CsGy1G003820 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63830.1	3.3e-78	77.73	hypothetical protein Csa_1G024160 [Cucumis sativus]	[more]
XP_004137543.1	9.8e-75	69.31	PREDICTED: myb-related protein 305-like [Cucumis sativus]	[more]
XP_008453409.1	4.9e-66	61.01	PREDICTED: transcription factor MYB24-like [Cucumis melo]	[more]
XP_023531056.1	3.3e-46	52.13	transcription factor JAMYB-like [Cucurbita pepo subsp. pepo]	[more]
XP_022926469.1	4.3e-46	53.71	transcription factor JAMYB-like [Cucurbita moschata]	[more]

BLAST of CsGy1G003820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48000.1	2.8e-07	52.17	myb domain protein 112	[more]
AT5G49620.2	2.4e-06	70.00	myb domain protein 78	[more]
AT1G25340.1	4.0e-06	48.78	myb domain protein 116	[more]
AT2G47190.1	5.3e-06	40.00	myb domain protein 2	[more]
AT3G24310.1	9.0e-06	56.25	myb domain protein 305	[more]

BLAST of CsGy1G003820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2QZJ8\|JAMYB_ORYSJ	3.9e-06	69.70	Transcription factor JAMYB OS=Oryza sativa subsp. japonica OX=39947 GN=JAMYB PE=...	[more]
sp\|Q10MB4\|MYB2_ORYSJ	1.1e-05	66.67	Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 ...	[more]
sp\|Q9FGY3\|MYB78_ARATH	4.3e-05	70.00	Transcription factor MYB78 OS=Arabidopsis thaliana OX=3702 GN=MYB78 PE=2 SV=1	[more]
sp\|P81391\|MYB05_ANTMA	2.8e-04	52.78	Myb-related protein 305 OS=Antirrhinum majus OX=4151 GN=MYB305 PE=2 SV=1	[more]
sp\|P81396\|MYB40_ANTMA	3.6e-04	60.00	Myb-related protein 340 OS=Antirrhinum majus OX=4151 GN=MYB340 PE=2 SV=1	[more]

BLAST of CsGy1G003820 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPL1\|A0A0A0LPL1_CUCSA	2.2e-78	77.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024160 PE=4 SV=1	[more]
tr\|A0A1S3BWZ6\|A0A1S3BWZ6_CUCME	3.2e-66	61.01	transcription factor MYB24-like OS=Cucumis melo OX=3656 GN=LOC103494131 PE=4 SV=...	[more]
tr\|A0A1S3C8F6\|A0A1S3C8F6_CUCME	3.1e-08	67.39	transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103497816 PE=4 SV...	[more]
tr\|A0A0A0LQS6\|A0A0A0LQS6_CUCSA	4.0e-08	67.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042350 PE=4 SV=1	[more]
tr\|A0A1R3KMZ8\|A0A1R3KMZ8_9ROSI	1.5e-07	53.70	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06458 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G003820.1	CsGy1G003820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 26..71 e-value: 1.3E-5 score: 26.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..138
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 27..65
None	No IPR available	PANTHER	PTHR10641:SF510	MYB TRANSCRIPTION FACTOR	coord: 27..65
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 37..71 e-value: 1.76297E-4 score: 36.3994
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 32..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G003820	Cla018967	Watermelon (97103) v1	cgybwmB095
CsGy1G003820	Csa1G024160	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G003820	ClCG06G014730	Watermelon (Charleston Gray)	cgybwcgB079
CsGy1G003820	CSPI01G03900	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G003820	CmoCh11G002830	Cucurbita moschata (Rifu)	cgybcmoB028
CsGy1G003820	Lsi06G013250	Bottle gourd (USVL1VR-Ls)	cgyblsiB068
CsGy1G003820	Cp4.1LG04g14120	Cucurbita pepo (Zucchini)	cgybcpeB127
CsGy1G003820	MELO3C017315.2	Melon (DHL92) v3.6.1	cgybmedB044
CsGy1G003820	MELO3C002090.2	Melon (DHL92) v3.6.1	cgybmedB025
CsGy1G003820	CsaV3_1G003920	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G003820	CsaV3_1G006660	Cucumber (Chinese Long) v3	cgybcucB004
CsGy1G003820	Cla97C04G077960	Watermelon (97103) v2	cgybwmbB054
CsGy1G003820	Cla97C06G124240	Watermelon (97103) v2	cgybwmbB077
CsGy1G003820	Bhi08G001023	Wax gourd	cgybwgoB036
CsGy1G003820	Bhi01G002693	Wax gourd	cgybwgoB011
CsGy1G003820	Carg09135	Silver-seed gourd	carcgybB0594

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy1G003820	CsGy1G006530	Cucumber (Gy14) v2	cgybcgybB002

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G003820	Cucumber (Chinese Long) v3	cgybcucB038
CsGy1G003820	Watermelon (97103) v2	cgybwmbB059
CsGy1G003820	Wax gourd	cgybwgoB068
CsGy1G003820	Cucumber (Gy14) v2	cgybcgybB028
CsGy1G003820	Cucurbita maxima (Rimu)	cgybcmaB029
CsGy1G003820	Cucurbita maxima (Rimu)	cgybcmaB077
CsGy1G003820	Cucurbita maxima (Rimu)	cgybcmaB088
CsGy1G003820	Cucurbita maxima (Rimu)	cgybcmaB098
CsGy1G003820	Cucurbita maxima (Rimu)	cgybcmaB131
CsGy1G003820	Cucurbita moschata (Rifu)	cgybcmoB071
CsGy1G003820	Cucurbita moschata (Rifu)	cgybcmoB086
CsGy1G003820	Cucurbita moschata (Rifu)	cgybcmoB091
CsGy1G003820	Cucurbita moschata (Rifu)	cgybcmoB123
CsGy1G003820	Cucurbita pepo (Zucchini)	cgybcpeB010
CsGy1G003820	Cucurbita pepo (Zucchini)	cgybcpeB020
CsGy1G003820	Cucurbita pepo (Zucchini)	cgybcpeB063
CsGy1G003820	Cucurbita pepo (Zucchini)	cgybcpeB073
CsGy1G003820	Cucumber (Chinese Long) v2	cgybcuB004
CsGy1G003820	Cucumber (Chinese Long) v2	cgybcuB033
CsGy1G003820	Bottle gourd (USVL1VR-Ls)	cgyblsiB021
CsGy1G003820	Bottle gourd (USVL1VR-Ls)	cgyblsiB049
CsGy1G003820	Melon (DHL92) v3.5.1	cgybmeB006
CsGy1G003820	Melon (DHL92) v3.5.1	cgybmeB026
CsGy1G003820	Melon (DHL92) v3.5.1	cgybmeB050
CsGy1G003820	Melon (DHL92) v3.6.1	cgybmedB006
CsGy1G003820	Watermelon (Charleston Gray)	cgybwcgB054
CsGy1G003820	Watermelon (Charleston Gray)	cgybwcgB059
CsGy1G003820	Watermelon (97103) v1	cgybwmB038
CsGy1G003820	Watermelon (97103) v1	cgybwmB065
CsGy1G003820	Wild cucumber (PI 183967)	cgybcpiB003
CsGy1G003820	Wild cucumber (PI 183967)	cgybcpiB030
CsGy1G003820	Silver-seed gourd	carcgybB0394
CsGy1G003820	Silver-seed gourd	carcgybB0519
CsGy1G003820	Silver-seed gourd	carcgybB0830