Csa1G024160.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G024160.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Myb transcription factor; contains IPR009057 (Homeodomain-like)
Location	Chr1 : 2406892 .. 2407988 (+)
Sequence length	744

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGGTATTTCTTAATTTATTGGGTAATAATTAAGTAAAAACTAAATTAATTTGGATGTGTTAATTAATTAATTAAAATATTATTACTCTGGGTTTTAATGTAATTTAAATTTGATAGGGCTTAGAAGGACAGGGAAGAGTTGTAGACTGAGATGGCTTAATTATCTAAAACCTGAAGTGAAGAGAGGAAATCTTTCTCCACAAGAACAGCTTTTGATTCTTGACCTTCATTCCAGATGGGGCAATAGGTAATTTTCGTTACACCATATATATAGCTATCACGAATCATCTCAAGTTTTCCAAAAGAGATCAAACAACCATATATAGCAATTGGTCTCTTGTATTAAAAAAAGCCAAAACTTTATGCTATTATTGAACTCTCTTTGATTATGATTAGGTGGTCAAAAATTGCACAGCAATTACCGGGAAGAACGGACAATGAAATAAAAAACTACTGGAGAACCAAAGTGCAAAAACAAGCAAAGATTCTCAACATCAGCACCAATAGCCCAGAATTCAAAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

mRNA sequence

ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGGGCTTAGAAGGACAGGGAAGAGTTATGGGGCAATAGGTAATTTTCGTTACACCATATATATAGCTATCACGAATCATCTCAAGTTTTCCAAAAGAGATCAAACAACCATATATAGCAATTGGTCTCTTATTCTCAACATCAGCACCAATAGCCCAGAATTCAAAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

Coding sequence (CDS)

ATGGCTTCTCCTTGTAAGAACCCAAGTCCAAGTCCGAGTCCGAGTCCCAGCAGTAGCGGGTCCTATAGTTTTATTGAAGATGATCAAAGTGAGGCAGTTAGAAGGGGGCCATGGAGTGTTGATGAGGATTCTCTTCTTATTCATTCTATTTCTGTCCATGGAGAAGGCCGTTGGAATTTGCTTGCTATTCGTTCAGGGCTTAGAAGGACAGGGAAGAGTTATGGGGCAATAGGTAATTTTCGTTACACCATATATATAGCTATCACGAATCATCTCAAGTTTTCCAAAAGAGATCAAACAACCATATATAGCAATTGGTCTCTTATTCTCAACATCAGCACCAATAGCCCAGAATTCAAAGACATTATCAACCGCTTTTGGATCCCTAGATTACTCCATCAAATAAACGATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCGCCGCCACACACGGCGGCCACACACCCAACCCCTCAATTTTCCGATTCCGATTCACTTCCGGCAGCCGATGGGAAGCGTCGCCATTTTGAGCAAAACAGCACCAGTTCGGAATCTGTGGAAATCTCGCAGGTCTCTGATCCATTCTCTGACGTCCCATCATGGAACTACGGCGGCGGCGAGACGGCGGCGGCGAATTTTGAATACACGATAGGGGATTCTTTGTTGCAACATACGGATTGGATCGACGACGACGATTCTTTTAACGGCTGCTTATGGAACTTCGACGGCTTGTGGCAGTTCTAG

Protein sequence

MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF*

Homology

[Close]

BLAST of Csa1G024160.1 vs. Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.7e-09
Identity = 68/250 (27.20%), Postives = 105/250 (42.00%), Query Frame = 1


Query: 17  SSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGA 76
           SS GS S  E +    VR+GPW+++ED +LI+ I+ HG+G WN LA  +GL+RTGKS   
Sbjct: 8   SSGGSGSSAEAE----VRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSC-- 67

Query: 77  IGNFRYTIYI-AITNHLKFSKRDQTTIY-------SNWSLILNISTNSPEFKD-IINRFW 136
               R+  Y+         +  +Q  I        + WS    I+ + P   D  I  FW
Sbjct: 68  --RLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWS---KIAKHLPGRTDNEIKNFW 127

Query: 137 IPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVE 196
             R+   I  S  +++S      +  +H + + +D              +  STSS +V 
Sbjct: 128 RTRIQKYIKQSDVTTTS------SVGSHHSSEIND--------------QAASTSSHNVF 187

Query: 197 IS--QVSDPFSDVPS--------WNYGGGETAA--ANFEYTIGDSLLQHTDWIDDDDSFN 246
            +  Q  + +S  P+        +NYG    AA  A  +Y +  ++         DD   
Sbjct: 188 CTQDQAMETYSPTPTSYQHTNMEFNYGNYSAAAVTATVDYPVPMTV---------DDQTG 217

[Close]

BLAST of Csa1G024160.1 vs. Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-08
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 27 DDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKS 74
          + Q   VR+GPW+++ED +LI+ I+ HGEG WN LA  +GL+RTGKS
Sbjct: 7  NSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKS 53

[Close]

BLAST of Csa1G024160.1 vs. Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 33 VRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKS 74
          VR+GPW+++ED +LI+ IS HGEG WN +A  +GL+RTGKS
Sbjct: 13 VRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKS 53

[Close]

BLAST of Csa1G024160.1 vs. Swiss-Prot
Match: MYB24_ARATH (Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 33 VRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKS 74
          VR+GPW+++ED +LI+ I+ HGEG WN LA  +GL+RTGKS
Sbjct: 17 VRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKS 57

[Close]

BLAST of Csa1G024160.1 vs. Swiss-Prot
Match: MYB57_ARATH (Transcription factor MYB57 OS=Arabidopsis thaliana GN=MYB57 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.4e-07
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 26 EDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKS 74
          + ++   VR+GPW+++ED +L + I  HGEG WN +A  SGL+RTGKS
Sbjct: 18 QKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKS 65

[Close]

BLAST of Csa1G024160.1 vs. TrEMBL
Match: A0A0A0LPL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024160 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 4.6e-144
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1


Query: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120
           LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK
Sbjct: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120

Query: 121 DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS 180
           DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS
Sbjct: 121 DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS 180

Query: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240
           TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN
Sbjct: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240

Query: 241 FDGLWQF 248
           FDGLWQF
Sbjct: 241 FDGLWQF 247

[Close]

BLAST of Csa1G024160.1 vs. TAIR10
Match: AT1G25340.1 (AT1G25340.1 myb domain protein 116)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-15
Identity = 76/278 (27.34%), Postives = 113/278 (40.65%), Query Frame = 1


Query: 27  DDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGAIGNFRYTIYI 86
           +++    R+GPW+++ED+LL + IS +GEGRWNLLA  SGL+R GKS       R+  Y+
Sbjct: 12  NEEGAEQRKGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRAGKSC----RLRWLNYL 71

Query: 87  -AITNHLKFSKRDQTTIY-------SNWSLI--------------------------LNI 146
                    + ++Q  I        + WS I                          LNI
Sbjct: 72  KPDIKRGNLTPQEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQKQARQLNI 131

Query: 147 STNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGK 206
            +NS +F +++  FW PRL+++I D+S +++     P        P   DS  L    G 
Sbjct: 132 DSNSHKFIEVVRSFWFPRLINEIKDNSYTNNIKANAPDLLG----PILRDSKDL----GF 191

Query: 207 RRHFEQNSTSSESVEISQVSDPFSDVPS-----WNYGGGETAAANF---------EYTI- 248
                  S S +  + SQ  D FSD+ +      + GG     +           EY + 
Sbjct: 192 NNMDCSTSMSEDLKKTSQFMD-FSDLETTMSLEGSRGGSSQCVSEVYSSFPCLEEEYMVA 251

[Close]

BLAST of Csa1G024160.1 vs. TAIR10
Match: AT1G48000.1 (AT1G48000.1 myb domain protein 112)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 52/174 (29.89%), Postives = 78/174 (44.83%), Query Frame = 1


Query: 25  IEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGA--IGNFRY 84
           +E      +RRGPW+V+ED  L+  IS+HGEGRWN L+  +GL RTGKS     +   R 
Sbjct: 24  VEKKMEIEIRRGPWTVEEDMKLVSYISLHGEGRWNSLSRSAGLNRTGKSCRLRWLNYLRP 83

Query: 85  TI----------YIAITNHLKFSK-----------RDQTTIYSNW-------SLILNIST 144
            I          +I +  H ++             R    I + W       + +L    
Sbjct: 84  DIRRGDISLQEQFIILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKLLKCDV 143

Query: 145 NSPEFKDIINRFWIPRLLHQI--NDSSSSSSSPPPPPHTAATHPTPQFSDSDSL 167
           NS +FKD I   W+PRL+ +I    S   +S+   P +++    T   S S+++
Sbjct: 144 NSKQFKDTIKHLWMPRLIERIAATQSVQFTSNHYSPENSSVATATSSTSSSEAV 197

[Close]

BLAST of Csa1G024160.1 vs. TAIR10
Match: AT1G68320.1 (AT1G68320.1 myb domain protein 62)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-13
Identity = 52/175 (29.71%), Postives = 82/175 (46.86%), Query Frame = 1


Query: 26  EDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGAIGNFRYTIY 85
           ++ + E +RRGPW+++ED+LL + I  +GEGRWN +A  +GL+RTGKS       R+  Y
Sbjct: 12  KESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSC----RLRWLNY 71

Query: 86  I-AITNHLKFSKRDQTTIY-------SNWSLI--------------------------LN 145
           +         + ++Q  I        + WS I                          LN
Sbjct: 72  LKPDIRRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQARQLN 131

Query: 146 ISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSL 167
           I +NS +F D +  FW+PRL+ ++  +SS          T  T+  PQ ++++SL
Sbjct: 132 IESNSDKFFDAVRSFWVPRLIEKMEQNSS----------TTTTYCCPQNNNNNSL 172

[Close]

BLAST of Csa1G024160.1 vs. TAIR10
Match: AT2G47190.1 (AT2G47190.1 myb domain protein 2)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-12
Identity = 70/266 (26.32%), Postives = 109/266 (40.98%), Query Frame = 1


Query: 28  DQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGAIGNFRYTIYIA 87
           ++   VR+GPW+ +ED++L++ +S+HG+ RWN +A  SGL+RTGKS       R+  Y+ 
Sbjct: 15  EEDSDVRKGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTGKSC----RLRWLNYLR 74

Query: 88  -------ITNHLKFSKRDQTTIYSN-WSLI--------------------------LNIS 147
                  IT   +F      +++ N WS I                          L   
Sbjct: 75  PDVRRGNITLEEQFMILKLHSLWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQAKHLRCD 134

Query: 148 TNSPEFKDIINRFWIPRLLHQINDSSSSSS-----SPPPPPHTAATHPTP------QFSD 207
            NS  FK+ +   W+PRL+ +IN  S  ++     S    P      P+P      QFS 
Sbjct: 135 VNSNLFKETMRNVWMPRLVERINAQSLPTTCEQVESMITDPSQPVNEPSPVEPGFVQFSQ 194

Query: 208 S---DSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGD 246
           +     +PA        E ++TSS S      ++ FSDV      GG    + ++ +   
Sbjct: 195 NHHQQFVPAT-------ELSATSSNS-----PAETFSDV-----RGGVVNGSGYDPSGQT 250

[Close]

BLAST of Csa1G024160.1 vs. TAIR10
Match: AT3G27810.1 (AT3G27810.1 myb domain protein 21)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 68/250 (27.20%), Postives = 105/250 (42.00%), Query Frame = 1


Query: 17  SSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRRTGKSYGA 76
           SS GS S  E +    VR+GPW+++ED +LI+ I+ HG+G WN LA  +GL+RTGKS   
Sbjct: 8   SSGGSGSSAEAE----VRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSC-- 67

Query: 77  IGNFRYTIYI-AITNHLKFSKRDQTTIY-------SNWSLILNISTNSPEFKD-IINRFW 136
               R+  Y+         +  +Q  I        + WS    I+ + P   D  I  FW
Sbjct: 68  --RLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWS---KIAKHLPGRTDNEIKNFW 127

Query: 137 IPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVE 196
             R+   I  S  +++S      +  +H + + +D              +  STSS +V 
Sbjct: 128 RTRIQKYIKQSDVTTTS------SVGSHHSSEIND--------------QAASTSSHNVF 187

Query: 197 IS--QVSDPFSDVPS--------WNYGGGETAA--ANFEYTIGDSLLQHTDWIDDDDSFN 246
            +  Q  + +S  P+        +NYG    AA  A  +Y +  ++         DD   
Sbjct: 188 CTQDQAMETYSPTPTSYQHTNMEFNYGNYSAAAVTATVDYPVPMTV---------DDQTG 217

[Close]

BLAST of Csa1G024160.1 vs. NCBI nr
Match: gi|700208734|gb|KGN63830.1| (hypothetical protein Csa_1G024160 [Cucumis sativus])

HSP 1 Score: 518.5 bits (1334), Expect = 6.6e-144
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1


Query: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120
           LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK
Sbjct: 61  LAIRSGLRRTGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNISTNSPEFK 120

Query: 121 DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS 180
           DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS
Sbjct: 121 DIINRFWIPRLLHQINDSSSSSSSPPPPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNS 180

Query: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240
           TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN
Sbjct: 181 TSSESVEISQVSDPFSDVPSWNYGGGETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWN 240

Query: 241 FDGLWQF 248
           FDGLWQF
Sbjct: 241 FDGLWQF 247

[Close]

BLAST of Csa1G024160.1 vs. NCBI nr
Match: gi|449439539|ref|XP_004137543.1| (PREDICTED: myb-related protein 305-like [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 3.4e-116
Identity = 218/277 (78.70%), Postives = 227/277 (81.95%), Query Frame = 1


Query: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLRRTGKS--------------YGAIGNFRYTIYIAITNHL--KFSK-------R 120
           LAIRSGLRRTGKS               G +      + + + +    ++SK       R
Sbjct: 61  LAIRSGLRRTGKSCRLRWLNYLKPEVKRGNLSPQEQLLILDLHSRWGNRWSKIAQQLPGR 120

Query: 121 DQTTIYSNW-------SLILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPH 180
               I + W       + ILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPH
Sbjct: 121 TDNEIKNYWRTKVQKQAKILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPH 180

Query: 181 TAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA 240
           TAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA
Sbjct: 181 TAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGGETAA 240

Query: 241 ANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 248
           ANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF
Sbjct: 241 ANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 277

[Close]

BLAST of Csa1G024160.1 vs. NCBI nr
Match: gi|659106715|ref|XP_008453409.1| (PREDICTED: transcription factor MYB24-like [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 1.1e-101
Identity = 202/281 (71.89%), Postives = 209/281 (74.38%), Query Frame = 1


Query: 1   MASPCKNPSPSPSPSPSSSGSYSFIEDDQSEAVRRGPWSVDEDSLLIHSISVHGEGRWNL 60
           MASPCKNPSPSPSPS  SSGS SFIEDDQSE VRRGPWSVDEDSLLIHSISVHGEGRWNL
Sbjct: 1   MASPCKNPSPSPSPS--SSGSSSFIEDDQSE-VRRGPWSVDEDSLLIHSISVHGEGRWNL 60

Query: 61  LAIRSGLRRTGKSYGAIGNFRYTIYI-AITNHLKFSKRDQTTI---YSNW---------- 120
           LAIRSGLRRTGKS       R+  Y+         S ++Q  I   +S W          
Sbjct: 61  LAIRSGLRRTGKSC----RLRWLNYLKPEVRRGNLSPQEQLLILDLHSRWGNRWSKIAQQ 120

Query: 121 --------------------SLILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPP 180
                               + ILNI TNSPEFKDIINR WIPRLLHQINDSSS     P
Sbjct: 121 LPGRTDNEIKNYWRTKVQKQAKILNIGTNSPEFKDIINRLWIPRLLHQINDSSS-----P 180

Query: 181 PPPHTAATHPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVPSWNYGGG 240
           PPPHTA THPTPQFSDSDSLP  DG RRHFEQNSTSSESVEISQVSDPFSDVPSWN+GGG
Sbjct: 181 PPPHTATTHPTPQFSDSDSLPTVDGNRRHFEQNSTSSESVEISQVSDPFSDVPSWNHGGG 240

Query: 241 ETAAANFEYTIGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 248
           ETAAANFEYT GDSLLQHTDWIDDDDSFNGCLWNFDGLWQF
Sbjct: 241 ETAAANFEYTTGDSLLQHTDWIDDDDSFNGCLWNFDGLWQF 269

[Close]

BLAST of Csa1G024160.1 vs. NCBI nr
Match: gi|700209027|gb|KGN64123.1| (hypothetical protein Csa_1G042350 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 5.6e-26
Identity = 93/261 (35.63%), Postives = 124/261 (47.51%), Query Frame = 1


Query: 13  SPSPSSSGSYSFIEDDQSE---AVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRR 72
           S SP S  S S IEDD S     +RRGPW+++ED+LLIHSIS HGEGRWNLLA RSGLRR
Sbjct: 3   SSSPKSFSSCSEIEDDNSSNGNELRRGPWTLEEDNLLIHSISTHGEGRWNLLAKRSGLRR 62

Query: 73  TGKSYGAIGNFRYTIYIAITNHLKFSKRDQTTIYSNWSLILNIST---NSPEFKDIINRF 132
           TGKS            +   N+LK   +          LIL++ +   NS  F+ II  +
Sbjct: 63  TGKS----------CRLRWLNYLKPDVKRGNLSAQEQLLILDLHSKWGNSEAFQQIIRSY 122

Query: 133 WIPRLLHQINDSSSSSSSPPPPPHTAA------THPTPQFSDSDSLPAADGKRRHFEQNS 192
           W+PRLL +IN S  S      PP  A+        PT   +   ++            + 
Sbjct: 123 WMPRLLQKINQSPPSELPITSPPEMASQTSFGFEAPTTAVTQPPAMTPLQIGGDLMGSSC 182

Query: 193 TSSESVEISQVSDPFSDVP-------SWNYGGGE-------TAAANFEYTIGDSLLQHTD 248
           TSS+  +IS   +  +  P          +GGGE         A +  Y +    +   +
Sbjct: 183 TSSQITQISSYQNYENYAPFVKDYCHDGGHGGGEMLNWTTTAVAGDSGYPVSHCHVAENN 242

[Close]

BLAST of Csa1G024160.1 vs. NCBI nr
Match: gi|449439407|ref|XP_004137477.1| (PREDICTED: transcription factor MYB108-like [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 99/288 (34.38%), Postives = 129/288 (44.79%), Query Frame = 1


Query: 13  SPSPSSSGSYSFIEDDQSE---AVRRGPWSVDEDSLLIHSISVHGEGRWNLLAIRSGLRR 72
           S SP S  S S IEDD S     +RRGPW+++ED+LLIHSIS HGEGRWNLLA RSGLRR
Sbjct: 3   SSSPKSFSSCSEIEDDNSSNGNELRRGPWTLEEDNLLIHSISTHGEGRWNLLAKRSGLRR 62

Query: 73  TGKSYG-----------AIGNFRYTIYIAITN-HLKFSK-----------RDQTTIYSNW 132
           TGKS               GN      + I + H K+             R    I + W
Sbjct: 63  TGKSCRLRWLNYLKPDVKRGNLSAQEQLLILDLHSKWGNRWSKIAQHLPGRTDNEIKNYW 122

Query: 133 -------SLILNISTNSPEFKDIINRFWIPRLLHQINDSSSSSSSPPPPPHTAA------ 192
                  +  LNI TNS  F+ II  +W+PRLL +IN S  S      PP  A+      
Sbjct: 123 RTRVQKQARHLNIDTNSEAFQQIIRSYWMPRLLQKINQSPPSELPITSPPEMASQTSFGF 182

Query: 193 THPTPQFSDSDSLPAADGKRRHFEQNSTSSESVEISQVSDPFSDVP-------SWNYGGG 248
             PT   +   ++            + TSS+  +IS   +  +  P          +GGG
Sbjct: 183 EAPTTAVTQPPAMTPLQIGGDLMGSSCTSSQITQISSYQNYENYAPFVKDYCHDGGHGGG 242

The following BLAST results are available for this feature:

BLAST of Csa1G024160.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB21_ARATH	4.7e-09	27.20	Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1	[more]
MYB05_ANTMA	9.0e-08	55.32	Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1	[more]
MYB40_ANTMA	1.2e-07	60.98	Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1	[more]
MYB24_ARATH	2.0e-07	60.98	Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1	[more]
MYB57_ARATH	4.4e-07	50.00	Transcription factor MYB57 OS=Arabidopsis thaliana GN=MYB57 PE=2 SV=1	[more]

BLAST of Csa1G024160.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPL1_CUCSA	4.6e-144	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024160 PE=4 SV=1	[more]

BLAST of Csa1G024160.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25340.1	3.6e-15	27.34	myb domain protein 116	[more]
AT1G48000.1	1.5e-13	29.89	myb domain protein 112	[more]
AT1G68320.1	3.4e-13	29.71	myb domain protein 62	[more]
AT2G47190.1	4.9e-12	26.32	myb domain protein 2	[more]
AT3G27810.1	2.7e-10	27.20	myb domain protein 21	[more]

BLAST of Csa1G024160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208734\|gb\|KGN63830.1\|	6.6e-144	100.00	hypothetical protein Csa_1G024160 [Cucumis sativus]	[more]
gi\|449439539\|ref\|XP_004137543.1\|	3.4e-116	78.70	PREDICTED: myb-related protein 305-like [Cucumis sativus]	[more]
gi\|659106715\|ref\|XP_008453409.1\|	1.1e-101	71.89	PREDICTED: transcription factor MYB24-like [Cucumis melo]	[more]
gi\|700209027\|gb\|KGN64123.1\|	5.6e-26	35.63	hypothetical protein Csa_1G042350 [Cucumis sativus]	[more]
gi\|449439407\|ref\|XP_004137477.1\|	2.1e-25	34.38	PREDICTED: transcription factor MYB108-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G024160	Csa1G024160	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G024160.1	Csa1G024160.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G024160.1.cds1	Csa1G024160.1.cds1	CDS
Csa1G024160.1.cds2	Csa1G024160.1.cds2	CDS
Csa1G024160.1.cds3	Csa1G024160.1.cds3	CDS
Csa1G024160.1.cds4	Csa1G024160.1.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 35..73 score: 2.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 34..87 score: 0.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 29..73 score: 9.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 32..72 score: 6.2
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 30..73 score: 7
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 6..73 score: 2.2
None	No IPR available	PANTHER	PTHR10641:SF494	TRANSCRIPTION FACTOR MYB108	coord: 6..73 score: 2.2