Csa1G024140 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G024140
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2391254 .. 2391541 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

mRNA sequence

ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

Coding sequence (CDS)

ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

Protein sequence

MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAILTFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR*
Homology
[Close]
BLAST of Csa1G024140 vs. TrEMBL
Match: A0A0A0LPT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024140 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60
          MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL
Sbjct: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60

Query: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 96
          TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR
Sbjct: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 95

[Close]
BLAST of Csa1G024140 vs. NCBI nr
Match: gi|700208732|gb|KGN63828.1| (hypothetical protein Csa_1G024140 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60
          MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL
Sbjct: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60

Query: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 96
          TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR
Sbjct: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 95

The following BLAST results are available for this feature:
BLAST of Csa1G024140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPT4_CUCSA1.1e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024140 PE=4 SV=1[more]
BLAST of Csa1G024140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208732|gb|KGN63828.1|1.5e-48100.00hypothetical protein Csa_1G024140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU108758cucumber EST collection version 3.0transcribed_cluster
CU130091cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G024140.1Csa1G024140.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU108758CU108758transcribed_cluster
CU130091CU130091transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G024140Melon (DHL92) v3.5.1cumeB010
Csa1G024140Melon (DHL92) v3.5.1cumeB033
Csa1G024140Melon (DHL92) v3.5.1cumeB055
Csa1G024140Watermelon (Charleston Gray)cuwcgB058
Csa1G024140Watermelon (Charleston Gray)cuwcgB063
Csa1G024140Watermelon (Charleston Gray)cuwcgB082
Csa1G024140Watermelon (97103) v1cuwmB039
Csa1G024140Watermelon (97103) v1cuwmB063
Csa1G024140Watermelon (97103) v1cuwmB095
Csa1G024140Cucurbita pepo (Zucchini)cpecuB024
Csa1G024140Cucurbita pepo (Zucchini)cpecuB031
Csa1G024140Cucurbita pepo (Zucchini)cpecuB352
Csa1G024140Cucurbita pepo (Zucchini)cpecuB381
Csa1G024140Cucurbita pepo (Zucchini)cpecuB509
Csa1G024140Cucurbita pepo (Zucchini)cpecuB654
Csa1G024140Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G024140Bottle gourd (USVL1VR-Ls)culsiB054
Csa1G024140Bottle gourd (USVL1VR-Ls)culsiB071
Csa1G024140Cucumber (Gy14) v2cgybcuB001
Csa1G024140Cucumber (Gy14) v2cgybcuB005
Csa1G024140Cucumber (Gy14) v2cgybcuB196
Csa1G024140Melon (DHL92) v3.6.1cumedB005
Csa1G024140Melon (DHL92) v3.6.1cumedB028
Csa1G024140Melon (DHL92) v3.6.1cumedB047
Csa1G024140Silver-seed gourdcarcuB0416
Csa1G024140Silver-seed gourdcarcuB0491
Csa1G024140Silver-seed gourdcarcuB0543
Csa1G024140Silver-seed gourdcarcuB0622
Csa1G024140Silver-seed gourdcarcuB0856
Csa1G024140Watermelon (97103) v2cuwmbB055
Csa1G024140Watermelon (97103) v2cuwmbB061
Csa1G024140Watermelon (97103) v2cuwmbB079
Csa1G024140Wax gourdcuwgoB012
Csa1G024140Wax gourdcuwgoB040
Csa1G024140Wax gourdcuwgoB071
Csa1G024140Cucumber (Chinese Long) v2cucuB000
Csa1G024140Cucumber (Chinese Long) v2cucuB030
Csa1G024140Cucumber (Gy14) v1cgycuB137
Csa1G024140Cucumber (Gy14) v1cgycuB160
Csa1G024140Cucumber (Gy14) v1cgycuB405
Csa1G024140Cucurbita maxima (Rimu)cmacuB061
Csa1G024140Cucurbita maxima (Rimu)cmacuB087
Csa1G024140Cucurbita maxima (Rimu)cmacuB221
Csa1G024140Cucurbita maxima (Rimu)cmacuB393
Csa1G024140Cucurbita maxima (Rimu)cmacuB404
Csa1G024140Cucurbita maxima (Rimu)cmacuB686
Csa1G024140Cucurbita moschata (Rifu)cmocuB076
Csa1G024140Cucurbita moschata (Rifu)cmocuB050
Csa1G024140Cucurbita moschata (Rifu)cmocuB207
Csa1G024140Cucurbita moschata (Rifu)cmocuB389
Csa1G024140Cucurbita moschata (Rifu)cmocuB679