Csa1G024140.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G024140.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2391254 .. 2391541 (-)
Sequence length288
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

mRNA sequence

ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

Coding sequence (CDS)

ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

Protein sequence

MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAILTFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR*
Homology
[Close]
BLAST of Csa1G024140.1 vs. TrEMBL
Match: A0A0A0LPT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024140 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60
          MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL
Sbjct: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60

Query: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 96
          TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR
Sbjct: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 95

[Close]
BLAST of Csa1G024140.1 vs. NCBI nr
Match: gi|700208732|gb|KGN63828.1| (hypothetical protein Csa_1G024140 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.5e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60
          MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL
Sbjct: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60

Query: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 96
          TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR
Sbjct: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 95

The following BLAST results are available for this feature:
BLAST of Csa1G024140.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPT4_CUCSA1.1e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024140 PE=4 SV=1[more]
BLAST of Csa1G024140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208732|gb|KGN63828.1|1.5e-48100.00hypothetical protein Csa_1G024140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G024140Csa1G024140gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G024140.1Csa1G024140.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G024140.1.cds1Csa1G024140.1.cds1CDS