Csa1G015720 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G015720
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein, putative; contains IPR002885 (Pentatricopeptide repeat)
LocationChr1 : 2110988 .. 2111290 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGATGGGTGTGAACCTGGGATTAAAACATATGATCTATTGATGGGAAAACTTTGTGCCCACAATCGTTTGGACAAAGCGAATTCACTCTTTAACGAAGCTCAAAAACGGGGTGTACCAGTTACTCCAAAAGCATATCAGGTGGATCCGAAATATGTAAAGAAGCCAAAGGATAAGAAGGTTGCAAAGAAGAGGGAGACATTGCCAGAGAAAATGGCGAGAAAGAGGCGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAACCGAGAAGAGGAATGCGTAGAGCATTTTGA

mRNA sequence

ATGAAGAAGGATGGGTGTGAACCTGGGATTAAAACATATGATCTATTGATGGGAAAACTTTGTGCCCACAATCGTTTGGACAAAGCGAATTCACTCTTTAACGAAGCTCAAAAACGGGGTGTACCAGTTACTCCAAAAGCATATCAGGTGGATCCGAAATATGTAAAGAAGCCAAAGGATAAGAAGGTTGCAAAGAAGAGGGAGACATTGCCAGAGAAAATGGCGAGAAAGAGGCGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAACCGAGAAGAGGAATGCGTAGAGCATTTTGA

Coding sequence (CDS)

ATGAAGAAGGATGGGTGTGAACCTGGGATTAAAACATATGATCTATTGATGGGAAAACTTTGTGCCCACAATCGTTTGGACAAAGCGAATTCACTCTTTAACGAAGCTCAAAAACGGGGTGTACCAGTTACTCCAAAAGCATATCAGGTGGATCCGAAATATGTAAAGAAGCCAAAGGATAAGAAGGTTGCAAAGAAGAGGGAGACATTGCCAGAGAAAATGGCGAGAAAGAGGCGACGACTGAAGCAAATTCGATTGAGTTTTGTCAAGAAACCGAGAAGAGGAATGCGTAGAGCATTTTGA

Protein sequence

MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKDKKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF*
Homology
[Close]
BLAST of Csa1G015720 vs. Swiss-Prot
Match: PP438_ARATH (Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis thaliana GN=PNM1 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-30
Identity = 65/101 (64.36%), Postives = 81/101 (80.20%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MK +GC+PGIKTYDLLMGK+CA+N+L +AN L+ EA K+G+ V+PK Y+VDP+++KK K 
Sbjct: 420 MKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKKGIAVSPKEYRVDPRFMKK-KT 479

Query: 61  KKV---AKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRR 99
           K+V    KKRETLPEK ARK++RLKQI +SFVKKP   MRR
Sbjct: 480 KEVDSNVKKRETLPEKTARKKKRLKQINMSFVKKPHNKMRR 519

[Close]
BLAST of Csa1G015720 vs. TrEMBL
Match: A0A0A0LPN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015720 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD
Sbjct: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60

Query: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 101
           KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF
Sbjct: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 100

[Close]
BLAST of Csa1G015720 vs. TrEMBL
Match: A0A059A5E5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02538 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.2e-39
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MK DGCEPGIKTYDLLMGK CAHNRLDKAN+LFNEA +RGVPV PKAY++DP+++KKPK 
Sbjct: 437 MKADGCEPGIKTYDLLMGKSCAHNRLDKANALFNEALRRGVPVEPKAYRLDPRFMKKPKA 496

Query: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMR 98
           +K  KKRETLPEKMARKRRRLKQIRLSFVKKP+R MR
Sbjct: 497 EKKEKKRETLPEKMARKRRRLKQIRLSFVKKPKRMMR 533

[Close]
BLAST of Csa1G015720 vs. TrEMBL
Match: D7SIL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05090 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-36
Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MK+DGC+PGIKTYDLLMGKLCAH RLDKAN+LF+EA  RGVPV  KAY++DP++VKKP  
Sbjct: 434 MKEDGCKPGIKTYDLLMGKLCAHGRLDKANALFSEAVNRGVPVESKAYKLDPRFVKKPTV 493

Query: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 101
            K  KKRETLPEKMARKRRRL++IRLSFVKKP+R MRRAF
Sbjct: 494 AKKEKKRETLPEKMARKRRRLRKIRLSFVKKPKR-MRRAF 532

[Close]
BLAST of Csa1G015720 vs. TrEMBL
Match: M5WCV0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004540mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.9e-36
Identity = 77/101 (76.24%), Postives = 89/101 (88.12%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYV-KKPK 60
           MK+DGCEPGIK+YDLLMGKL AHNR D+A +LFNEAQKRGVP+T KAYQ DP+++ KKPK
Sbjct: 404 MKEDGCEPGIKSYDLLMGKLYAHNRADRATALFNEAQKRGVPLTQKAYQADPRFLKKKPK 463

Query: 61  DKKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 101
             K  KKRET PEKMARK+RRLKQIRLSFVKKP++ MRRA+
Sbjct: 464 AAKKEKKRETFPEKMARKKRRLKQIRLSFVKKPKKMMRRAY 504

[Close]
BLAST of Csa1G015720 vs. TrEMBL
Match: W9QEE5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016828 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.4e-36
Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKP-K 60
           MKKDGCEPG+KTY+LLM KLCAHNR+DKAN+LFN A+KRGVPVT K Y VDP+Y+KK  K
Sbjct: 487 MKKDGCEPGVKTYELLMEKLCAHNRVDKANALFNGAKKRGVPVTQKEYPVDPRYLKKKVK 546

Query: 61  DKKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 101
             K  KKRETLPEKMARKRRRLKQIRLSFVKKP++  RRA+
Sbjct: 547 AVKKEKKRETLPEKMARKRRRLKQIRLSFVKKPKKMTRRAY 587

[Close]
BLAST of Csa1G015720 vs. TAIR10
Match: AT5G60960.1 (AT5G60960.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 133.7 bits (335), Expect = 6.6e-32
Identity = 65/101 (64.36%), Postives = 81/101 (80.20%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MK +GC+PGIKTYDLLMGK+CA+N+L +AN L+ EA K+G+ V+PK Y+VDP+++KK K 
Sbjct: 420 MKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKKGIAVSPKEYRVDPRFMKK-KT 479

Query: 61  KKV---AKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRR 99
           K+V    KKRETLPEK ARK++RLKQI +SFVKKP   MRR
Sbjct: 480 KEVDSNVKKRETLPEKTARKKKRLKQINMSFVKKPHNKMRR 519

[Close]
BLAST of Csa1G015720 vs. NCBI nr
Match: gi|449440893|ref|XP_004138218.1| (PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 3.9e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD
Sbjct: 423 MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 482

Query: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 101
           KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF
Sbjct: 483 KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 522

[Close]
BLAST of Csa1G015720 vs. NCBI nr
Match: gi|700208682|gb|KGN63778.1| (hypothetical protein Csa_1G015720 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 3.9e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD
Sbjct: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60

Query: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 101
           KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF
Sbjct: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 100

[Close]
BLAST of Csa1G015720 vs. NCBI nr
Match: gi|659106304|ref|XP_008453300.1| (PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-48
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKY+KKPK 
Sbjct: 423 MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYMKKPKV 482

Query: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRAF 101
           KKVAKKRETLPEKMARKRRRLKQIRLSFVKKP++GMRRAF
Sbjct: 483 KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPKKGMRRAF 522

[Close]
BLAST of Csa1G015720 vs. NCBI nr
Match: gi|702496510|ref|XP_010037251.1| (PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Eucalyptus grandis])

HSP 1 Score: 167.9 bits (424), Expect = 8.9e-39
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MK DGCEPGIKTYDLLMGK CAHNRLDKAN+LFNEA +RGVPV PKAY++DP+++KKPK 
Sbjct: 437 MKADGCEPGIKTYDLLMGKSCAHNRLDKANALFNEALRRGVPVEPKAYRLDPRFMKKPKA 496

Query: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMR 98
           +K  KKRETLPEKMARKRRRLKQIRLSFVKKP+R MR
Sbjct: 497 EKKEKKRETLPEKMARKRRRLKQIRLSFVKKPKRMMR 533

[Close]
BLAST of Csa1G015720 vs. NCBI nr
Match: gi|743887753|ref|XP_011038239.1| (PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Populus euphratica])

HSP 1 Score: 165.6 bits (418), Expect = 4.4e-38
Identity = 80/99 (80.81%), Postives = 87/99 (87.88%), Query Frame = 1 

Query: 1   MKKDGCEPGIKTYDLLMGKLCAHNRLDKANSLFNEAQKRGVPVTPKAYQVDPKYVKKPKD 60
           MK DGC+PGIKTYDLLMGK CAHNRLDKAN L+NEA   GV VTPK Y+VDPK++KKPK 
Sbjct: 418 MKADGCKPGIKTYDLLMGKWCAHNRLDKANVLYNEALSNGVTVTPKEYRVDPKFMKKPKA 477

Query: 61  KKVAKKRETLPEKMARKRRRLKQIRLSFVKKPRRGMRRA 100
            K  KKRETLPEKMARKRRRLKQIRLSFVKKP++GMRRA
Sbjct: 478 VKKEKKRETLPEKMARKRRRLKQIRLSFVKKPKKGMRRA 516

The following BLAST results are available for this feature:
BLAST of Csa1G015720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP438_ARATH1.2e-3064.36Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis t... [more]
BLAST of Csa1G015720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPN9_CUCSA2.7e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015720 PE=4 SV=1[more]
A0A059A5E5_EUCGR6.2e-3982.47Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02538 PE=4 SV=1[more]
D7SIL7_VITVI3.8e-3678.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05090 PE=4 SV=... [more]
M5WCV0_PRUPE4.9e-3676.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004540mg PE=4 SV=1[more]
W9QEE5_9ROSA8.4e-3677.23Uncharacterized protein OS=Morus notabilis GN=L484_016828 PE=4 SV=1[more]
BLAST of Csa1G015720 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60960.16.6e-3264.36 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Csa1G015720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440893|ref|XP_004138218.1|3.9e-50100.00PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Cucu... [more]
gi|700208682|gb|KGN63778.1|3.9e-50100.00hypothetical protein Csa_1G015720 [Cucumis sativus][more]
gi|659106304|ref|XP_008453300.1|4.7e-4896.00PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Cucu... [more]
gi|702496510|ref|XP_010037251.1|8.9e-3982.47PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Euca... [more]
gi|743887753|ref|XP_011038239.1|4.4e-3880.81PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Popu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016049 cell growth
biological_process GO:0010215 cellulose microfibril organization
biological_process GO:0009640 photomorphogenesis
biological_process GO:0000338 protein deneddylation
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101487cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G015720.1Csa1G015720.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101487CU101487transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 12..43
score: 4.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 9..43
score: 9
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..42
score: 6.3
NoneNo IPR availablePANTHERPTHR24015:SF831PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIALcoord: 1..42
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G015720Cla019045Watermelon (97103) v1cuwmB082
Csa1G015720MELO3C017241Melon (DHL92) v3.5.1cumeB044
Csa1G015720ClCG06G015530Watermelon (Charleston Gray)cuwcgB068
Csa1G015720Lsi06G014030Bottle gourd (USVL1VR-Ls)culsiB061
Csa1G015720MELO3C017241.2Melon (DHL92) v3.6.1cumedB036
Csa1G015720Cla97C06G125060Watermelon (97103) v2cuwmbB068
Csa1G015720Bhi02G000052Wax gourdcuwgoB080
Csa1G015720CSPI01G03390Wild cucumber (PI 183967)cpicuB000
Csa1G015720Cucsa.198680Cucumber (Gy14) v1cgycuB299
Csa1G015720CmaCh10G002900Cucurbita maxima (Rimu)cmacuB051
Csa1G015720CmaCh11G002170Cucurbita maxima (Rimu)cmacuB101
Csa1G015720CmoCh11G002190Cucurbita moschata (Rifu)cmocuB089
Csa1G015720CmoCh10G003090Cucurbita moschata (Rifu)cmocuB040
Csa1G015720CsGy1G003370Cucumber (Gy14) v2cgybcuB001
Csa1G015720Carg17871Silver-seed gourdcarcuB0494
Csa1G015720Carg09193Silver-seed gourdcarcuB0620
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G015720Cucurbita pepo (Zucchini)cpecuB033
Csa1G015720Cucurbita pepo (Zucchini)cpecuB352
Csa1G015720Cucurbita pepo (Zucchini)cpecuB381
Csa1G015720Cucurbita pepo (Zucchini)cpecuB509
Csa1G015720Cucurbita pepo (Zucchini)cpecuB638
Csa1G015720Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G015720Cucumber (Gy14) v2cgybcuB005
Csa1G015720Silver-seed gourdcarcuB0416
Csa1G015720Silver-seed gourdcarcuB0491
Csa1G015720Silver-seed gourdcarcuB0543
Csa1G015720Silver-seed gourdcarcuB0622
Csa1G015720Watermelon (97103) v2cuwmbB055
Csa1G015720Cucumber (Chinese Long) v2cucuB000
Csa1G015720Cucumber (Gy14) v1cgycuB405
Csa1G015720Cucurbita maxima (Rimu)cmacuB087
Csa1G015720Cucurbita maxima (Rimu)cmacuB221
Csa1G015720Cucurbita maxima (Rimu)cmacuB393
Csa1G015720Cucurbita maxima (Rimu)cmacuB686
Csa1G015720Cucurbita moschata (Rifu)cmocuB076
Csa1G015720Cucurbita moschata (Rifu)cmocuB207
Csa1G015720Cucurbita moschata (Rifu)cmocuB385
Csa1G015720Melon (DHL92) v3.5.1cumeB010
Csa1G015720Watermelon (Charleston Gray)cuwcgB058
Csa1G015720Watermelon (97103) v1cuwmB063