Csa1G013200 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G013200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1765955 .. 1766303 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGAGCGACACCAACAAAACTGAACAGATGAATGAGAATGGCACCAACAAAGATCGTGTGCGATACCAAACGTGTGAGATGGAAGGGAGCAAAATGGTCGCCTTTTCACACGTGCGAGTGCATTTTGGTAATTACACGTCAACTATGAGTTATTCCACATATTTAAAAAAGTAAGGGATGATTTCACATATTTATAATTTTGAGGTCTAACCATCAGGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

mRNA sequence

ATGGACAAGAGCGACACCAACAAAACTGAACAGATGAATGAGAATGGCACCAACAAAGATCGTGTGCGATACCAAACGTGTGAGATGGAAGGGAGCAAAATGGTCGCCTTTTCACACGTGCGAGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

Coding sequence (CDS)

ATGGACAAGAGCGACACCAACAAAACTGAACAGATGAATGAGAATGGCACCAACAAAGATCGTGTGCGATACCAAACGTGTGAGATGGAAGGGAGCAAAATGGTCGCCTTTTCACACGTGCGAGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

Protein sequence

MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHIKVSPVGGNSSPASSTFRVLRQH*
Homology
[Close]
BLAST of Csa1G013200 vs. TrEMBL
Match: A0A0A0LUM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013200 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60
          MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI
Sbjct: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60

Query: 61 KVSPVGGNSSPASSTFRVLRQH 83
          KVSPVGGNSSPASSTFRVLRQH
Sbjct: 61 KVSPVGGNSSPASSTFRVLRQH 82

[Close]
BLAST of Csa1G013200 vs. NCBI nr
Match: gi|700208625|gb|KGN63721.1| (hypothetical protein Csa_1G013200 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60
          MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI
Sbjct: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60

Query: 61 KVSPVGGNSSPASSTFRVLRQH 83
          KVSPVGGNSSPASSTFRVLRQH
Sbjct: 61 KVSPVGGNSSPASSTFRVLRQH 82

The following BLAST results are available for this feature:
BLAST of Csa1G013200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUM7_CUCSA2.3e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013200 PE=4 SV=1[more]
BLAST of Csa1G013200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208625|gb|KGN63721.1|3.3e-39100.00hypothetical protein Csa_1G013200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G013200.1Csa1G013200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G013200CSPI01G02810Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G013200Cucurbita pepo (Zucchini)cpecuB509
Csa1G013200Cucurbita pepo (Zucchini)cpecuB653
Csa1G013200Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G013200Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G013200Bottle gourd (USVL1VR-Ls)culsiB056
Csa1G013200Cucumber (Gy14) v2cgybcuB001
Csa1G013200Cucumber (Gy14) v2cgybcuB005
Csa1G013200Melon (DHL92) v3.6.1cumedB004
Csa1G013200Melon (DHL92) v3.6.1cumedB026
Csa1G013200Melon (DHL92) v3.6.1cumedB046
Csa1G013200Silver-seed gourdcarcuB0416
Csa1G013200Silver-seed gourdcarcuB0622
Csa1G013200Watermelon (97103) v2cuwmbB055
Csa1G013200Watermelon (97103) v2cuwmbB060
Csa1G013200Watermelon (97103) v2cuwmbB078
Csa1G013200Wax gourdcuwgoB054
Csa1G013200Wax gourdcuwgoB070
Csa1G013200Wax gourdcuwgoB117
Csa1G013200Cucumber (Chinese Long) v2cucuB000
Csa1G013200Cucumber (Chinese Long) v2cucuB029
Csa1G013200Watermelon (97103) v1cuwmB094
Csa1G013200Cucumber (Gy14) v1cgycuB138
Csa1G013200Cucumber (Gy14) v1cgycuB299
Csa1G013200Cucumber (Gy14) v1cgycuB404
Csa1G013200Cucurbita maxima (Rimu)cmacuB087
Csa1G013200Cucurbita maxima (Rimu)cmacuB221
Csa1G013200Cucurbita maxima (Rimu)cmacuB685
Csa1G013200Cucurbita moschata (Rifu)cmocuB076
Csa1G013200Cucurbita moschata (Rifu)cmocuB210
Csa1G013200Cucurbita moschata (Rifu)cmocuB673
Csa1G013200Melon (DHL92) v3.5.1cumeB009
Csa1G013200Melon (DHL92) v3.5.1cumeB030
Csa1G013200Melon (DHL92) v3.5.1cumeB054
Csa1G013200Watermelon (Charleston Gray)cuwcgB058
Csa1G013200Watermelon (Charleston Gray)cuwcgB062
Csa1G013200Watermelon (Charleston Gray)cuwcgB081
Csa1G013200Watermelon (97103) v1cuwmB037
Csa1G013200Watermelon (97103) v1cuwmB063