Csa1G013200.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G013200.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1765955 .. 1766303 (+)
Sequence length249
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGAGCGACACCAACAAAACTGAACAGATGAATGAGAATGGCACCAACAAAGATCGTGTGCGATACCAAACGTGTGAGATGGAAGGGAGCAAAATGGTCGCCTTTTCACACGTGCGAGTGCATTTTGGTAATTACACGTCAACTATGAGTTATTCCACATATTTAAAAAAGTAAGGGATGATTTCACATATTTATAATTTTGAGGTCTAACCATCAGGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

mRNA sequence

ATGGACAAGAGCGACACCAACAAAACTGAACAGATGAATGAGAATGGCACCAACAAAGATCGTGTGCGATACCAAACGTGTGAGATGGAAGGGAGCAAAATGGTCGCCTTTTCACACGTGCGAGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

Coding sequence (CDS)

ATGGACAAGAGCGACACCAACAAAACTGAACAGATGAATGAGAATGGCACCAACAAAGATCGTGTGCGATACCAAACGTGTGAGATGGAAGGGAGCAAAATGGTCGCCTTTTCACACGTGCGAGTGGACTCAGTAAATTTGAGCGCGAATCCAACCGAACCCCCATCAAAGCGCCATATTAAAGTCTCTCCGGTTGGCGGCAACTCATCGCCGGCGTCTTCCACCTTCCGAGTCTTGCGGCAACACTGA

Protein sequence

MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHIKVSPVGGNSSPASSTFRVLRQH*
Homology
[Close]
BLAST of Csa1G013200.1 vs. TrEMBL
Match: A0A0A0LUM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013200 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60
          MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI
Sbjct: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60

Query: 61 KVSPVGGNSSPASSTFRVLRQH 83
          KVSPVGGNSSPASSTFRVLRQH
Sbjct: 61 KVSPVGGNSSPASSTFRVLRQH 82

[Close]
BLAST of Csa1G013200.1 vs. NCBI nr
Match: gi|700208625|gb|KGN63721.1| (hypothetical protein Csa_1G013200 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60
          MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI
Sbjct: 1  MDKSDTNKTEQMNENGTNKDRVRYQTCEMEGSKMVAFSHVRVDSVNLSANPTEPPSKRHI 60

Query: 61 KVSPVGGNSSPASSTFRVLRQH 83
          KVSPVGGNSSPASSTFRVLRQH
Sbjct: 61 KVSPVGGNSSPASSTFRVLRQH 82

The following BLAST results are available for this feature:
BLAST of Csa1G013200.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUM7_CUCSA2.3e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G013200 PE=4 SV=1[more]
BLAST of Csa1G013200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208625|gb|KGN63721.1|3.3e-39100.00hypothetical protein Csa_1G013200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G013200Csa1G013200gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G013200.1Csa1G013200.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G013200.1.cds1Csa1G013200.1.cds1CDS
Csa1G013200.1.cds2Csa1G013200.1.cds2CDS