Csa1G011490 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G011490
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mitochondrial import inner membrane translocase subunit TIM16; contains IPR005341 (Mitochondrial import inner membrane translocase subunit Tim16)
Location	Chr1 : 1613065 .. 1615990 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGCAAGAATCGCAGCCTTTTCGGTAACTTGTTGCTCTAATTTCTTTTTATAATTAGATTTAAGCGTTGGGATGTTATTCTGAACTCTAGGAACTCACCGGTTGTTGTGTTTGAGTCGGTTTTGAAGTATTTGGATTAAGGTTCTATAATCATTAACGCCTTGAACCGTTTTAGACTCGATTAAAGTGTGATAGATAAGTGTTTTTATCTGCGAAAGCTTGTTGTTTGTAGCTTCGAATTAACTCGAGGTTGGTTTTTGTTGATTTTAGCTATGAGTATCCCTCTTGAACACTTTTTTTTTTTTTATTAAGTTTTTCAAACTGTGTTCTAATTTCTCAACTTTGTGTTATTTGTTTAGACTTCGAGGAAGTCGATATTCGTTCAAAAAGTGATTTTGGATTGAGCATAATAGGATTATTGATCGAGTAGTTTCTACATCTCATCCACGATATAAATTTTGATGAAGAAATGTTTTGACTATTTTGTTTCGATAGAAAATTGAGAGTATATTTTATGTGATGATTGACTGAAAGCGTTTTGCACATCTTTAGTTGATTTTATCAAATGAAAGTATGCTACTGTTTTGATTGATAATTGGAAGTGTTTTGATTGTTTTTGAATTGAAATTGTTTCTACTTTTGTTTTGTTACTTCTAAAAGTTATTGAAAGGTTTGAATGGTTTGATTAGATTAATTCTTCTACTGAAATTGCTATTTGAAACTATGCGTTTTGCTTTTGGGCTGGGAAAGAGGACAATTAGTTACATTTCGTGTGGGTACCCCAGAGAGGGTTTATGTAGGGTTTGGAGGCATGGTGAAGGGTGTGAAAAATTTGGCTAAAGGCTGAGGAATTGGAGAGTATTTTTTGGCACTCTCGATGGAGTCAAATAGTTCTATGTTTGTCTTTGCTTTGTTCTTATTTCCTTGCGTTAGTGAGCTTAGAACTCTGTTATTTGCTTGTTGTTTCGTTATCTGCAATATATGTTTTAGATCATGGAGACTTTCCCGTTTTTTGATTCTTGTTGGGATTTTCTGTTTATTGGGATTACCAGAAACCTAATAGCTAGATAGCTGTTTTGATTGATTTTGCACTGCTGTCAAGGCCAGCCAACTAATCATGGTATTTCTCATCTCTCTTTCTTTCCTCCTCTGACAGTCTGACTTGACAGAGGATCAATTTCTAAGACACCGAGAAATAAATATGGAATTTAAAGCAGATGTCTAAAGCTTAAATTATGTTGTTAATTTTGTCTGAAGTATTATGTTTCTATCACCCCCATTGGACAATTGGTTTTCCAAATTGATTATAGGTTATGGGTTACATTCATAGTTTTCATTTTGCCGTTGTTTTGGTGAGGGGAGGGACTAGAGAGAGTTAAGTCTTGTGGATATTTTTTGCATCACCACATATCATCTTTATTTTTTATTTTTTCCCCTCCTCGACTCTAAATATGTTGGGCTATTTCTGAAATGATGCTGAGTTTCTTCTCCTCTCCGCTTTCTAAAGCATTTGAAATTAAACATATTTGAAATGTATATGTATATGTATATCACTTATGTCATGTTTTTAAATTGTCAGACAAAATTATTGCATGATTTTTTAGCAACTTTGACAGAGGAGTAGTTATTGCATTATTTTTTAAGTTGTCTTATATTCATTTTAAGAACTTCATGTAAGAGAGCCTCTTTTCTTATATGTATTTGGACAGGCTGCAAAAATTCTTGCCCATTTAATTGTTTCGGGATCTGTGGTAATTGGGAGGGCCGTTGCTCAAGCCTACCAACAAGCCATTCGAAGTAAGTACATTTTTTTATTTCATCAATATCATGGTTCTTGGTGTAACATTTTTTGGCTGGCTTGATGGAAACTTGACGTATAGAACAAAAGAAACCACCTCGTTTTTGAACTATTAGAAGCTATATTGTCAACTTGACATATTGAACAAAAGAAACCACCTTTGAAACTTTACGTATTGAACAAAAGAAACCACCAAGCTTTTTGCCATCAAGAACAGTTGCACAAAGTGTTAGAAAATTAATGTATTTGAGGGATGTTAACATCTTGAATTTCTTCTTTTACATCCTTCCTCATCTTTGAATGCCTGAATAATGTCTTCTTAGACCTTCAGTAAGTGGTCAAAAGAATTTGTTGTTTTTCTAGGCTGTAACATGAGCAACCGTTTTTGCAAATAAAAGCTAAGTTTTATATTGCACATATTTTATAGTTATTATTCTTTTTGTTGACGAATAGCCTATTTGAGTGTTCATGGCCTGGATGATAGCGTACTGCAGTGCCAACATTTGGTCACCCTTGAAAGGCTGAATAATACCTTCCTTGATCTTTGTAGAAAATGCTTCTATTGAATATATTATTTATTAGTTTGGTCAAATTTGGTTGTTTATACAAAGTTCTTACTTCTTAATGTGGGAGAGTTTGACACAGTTTAGTTGTAGACGATTATGCTTAGTATCAAATCTCTTTTATGTGTTGAAGATGCTTCAAATTCCGGTGTTGCTCAAGAAACTATACGAAACACTGTTCGTAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACAGAAGAAATGCCTTGGGAGGAAATTGTGAAGGTCAATTCTCTAATGCTTTTCACTAACATAGTTCACTATACGTCTCATACTACCTTGAGGCTTATGCGTCACCTCTTCGAGTGAAAAAGTCTTAAGACAGCTTTAACATTTTGAAATCTTGATATTATGAATATGTTTTTGACCATTCTTCCTACATGTGCAGAAATATGATGCTTTGTTTGAAAGGAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTCCATAGAGCCAAAGAACGATTAGAAACTCTCCATCATAGCAAAGGTCAGGATGGCCCTAGCTGTGTGTCCTGA

mRNA sequence

ATGGCTGCAAAAATTCTTGCCCATTTAATTGTTTCGGGATCTGTGGTAATTGGGAGGGCCGTTGCTCAAGCCTACCAACAAGCCATTCGAAATGCTTCAAATTCCGGTGTTGCTCAAGAAACTATACGAAACACTGTTCGTAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACAGAAGAAATGCCTTGGGAGGAAATTGTGAAGAAATATGATGCTTTGTTTGAAAGGAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTCCATAGAGCCAAAGAACGATTAGAAACTCTCCATCATAGCAAAGGTCAGGATGGCCCTAGCTGTGTGTCCTGA

Coding sequence (CDS)

ATGGCTGCAAAAATTCTTGCCCATTTAATTGTTTCGGGATCTGTGGTAATTGGGAGGGCCGTTGCTCAAGCCTACCAACAAGCCATTCGAAATGCTTCAAATTCCGGTGTTGCTCAAGAAACTATACGAAACACTGTTCGTAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACAGAAGAAATGCCTTGGGAGGAAATTGTGAAGAAATATGATGCTTTGTTTGAAAGGAATGCTCAAACTGGAAGCTTTTATCTTCAGTCAAAAGTCCATAGAGCCAAAGAACGATTAGAAACTCTCCATCATAGCAAAGGTCAGGATGGCCCTAGCTGTGTGTCCTGA

Protein sequence

MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPSCVS*

Homology

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BLAST of Csa1G011490 vs. Swiss-Prot
Match: TIM16_DANRE (Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=pam16 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-11
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1


Query: 3   AKILAHLIVSGSVVIGRAVAQAYQQ--AIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 62
           AK LA +IV G+ V+GRA A+A +Q  A   A+     Q   ++    +   MT QEA+Q
Sbjct: 2   AKYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQ 61

Query: 63  ILGVTEEMPWEEIVKKYDALFERN--AQTGSFYLQSKVHRAKERLE 105
           IL ++   P EEI K Y+ LF+ N  A  GSFY+QSKV RAKERL+
Sbjct: 62  ILNISTLTP-EEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLD 106

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BLAST of Csa1G011490 vs. Swiss-Prot
Match: TIM16_MOUSE (Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN=Pam16 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-11
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1


Query: 3   AKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKV--MTEQEARQ 62
           AK LA +IV G  V+GRA A+A +Q    +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQ 61

Query: 63  ILGVTEEMPWEEIVKKYDALFERNAQT--GSFYLQSKVHRAKERLE 105
           IL V++  P EE+ K Y+ LF+ N ++  GSFYLQSKV RAKERL+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLD 106

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BLAST of Csa1G011490 vs. Swiss-Prot
Match: TIM16_HUMAN (Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN=PAM16 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-11
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1


Query: 3   AKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKV--MTEQEARQ 62
           AK LA +IV G  V+GRA A+A +Q    +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 61

Query: 63  ILGVTEEMPWEEIVKKYDALFERNAQT--GSFYLQSKVHRAKERLE 105
           IL V++  P EE+ K Y+ LF+ N ++  GSFYLQSKV RAKERL+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLD 106

[Close]

BLAST of Csa1G011490 vs. Swiss-Prot
Match: TIM16_DROME (Mitochondrial import inner membrane translocase subunit Tim16 OS=Drosophila melanogaster GN=blp PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-11
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1


Query: 3   AKILAHLIVSGSVVIGRAVAQAYQQAI----RNASNSGVAQETIRNTVRRASKVMTEQEA 62
           AK +A +IV G+  +GRA  +A +Q I      A  +G  ++  ++        MT +EA
Sbjct: 2   AKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAESNLRTGMTLEEA 61

Query: 63  RQILGVTEEMPWEEIVKKYDALFERNAQT--GSFYLQSKVHRAKERLETLHHSKGQDGP 116
           +QIL + +    + I K Y+ LF+ N ++  GSFY+QSKV RAKERL+  H  K  + P
Sbjct: 62  KQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSKVFRAKERLD--HEIKAHEQP 118

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BLAST of Csa1G011490 vs. Swiss-Prot
Match: TIM16_NEUCR (Mitochondrial import inner membrane translocase subunit tim16 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=un-4 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKV--MTEQEA 60
           MA +++  ++V GS V+GRA A+AY+QA  ++      Q+       RAS    MT  EA
Sbjct: 1   MAYRLITQVVVVGSRVLGRAFAEAYKQAAASSQYQRAQQKNGNAATGRASLTSGMTLDEA 60

Query: 61  RQILGVTEEMP-----WEEIVKKYDALFERN--AQTGSFYLQSKVHRAKERLE 105
            +IL V +         EE+++++  LF+ N   + GSFYLQSKV RA+ERLE
Sbjct: 61  CKILNVNKPADGTAANMEEVMERFKRLFDANDPEKGGSFYLQSKVVRARERLE 113

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BLAST of Csa1G011490 vs. TrEMBL
Match: A0A0A0LSD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-58
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPSCVS 120
           ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPSCVS
Sbjct: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPSCVS 119

[Close]

BLAST of Csa1G011490 vs. TrEMBL
Match: A0A0A0LW69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-45
Identity = 95/116 (81.90%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQET++NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTEE PWEE+ KKYDALFERNAQTGSFYLQSKVHRAKERLETL+ +KGQD PS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]

BLAST of Csa1G011490 vs. TrEMBL
Match: A0A067LED2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-40
Identity = 87/116 (75.00%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQETI+NT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTEE  WEEIVKKYD LFERNA+ GSFYLQSKVHRAKE LE +H  KG+  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]

BLAST of Csa1G011490 vs. TrEMBL
Match: B9IAD9_POPTR (Magmas-like family protein OS=Populus trichocarpa GN=POPTR_0014s14920g PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 83/116 (71.55%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MA KILA+LIV GS ++GRA  QAY+QA+ NAS SGVAQET++NT+RR SKVMTEQEARQ
Sbjct: 1   MAGKILANLIVMGSAILGRAFIQAYRQALANASKSGVAQETLQNTIRRGSKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTEE  WEEI+KKYD LFERN++ GSFY+QSKVHRAKE LE +H  KG+  P+
Sbjct: 61  ILGVTEETSWEEILKKYDTLFERNSKNGSFYIQSKVHRAKECLEAVHQGKGEGTPT 116

[Close]

BLAST of Csa1G011490 vs. TrEMBL
Match: A0A059AV82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-39
Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV G  ++ RA+ QAY+QA+ NAS +GVAQET++NTVRRASK MTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTEE  WE+I+KKYDALFERNA+ GSFY+QSKVHRAKE LE+++  KGQ  PS
Sbjct: 61  ILGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSNPS 116

[Close]

BLAST of Csa1G011490 vs. TAIR10
Match: AT3G59280.1 (AT3G59280.1 Protein Transporter, Pam16)

HSP 1 Score: 154.8 bits (390), Expect = 3.3e-38
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MA ++LA+LIV GS +IGRAV QAY+QA+ NAS SGVAQE ++N VR+A K +TEQEARQ
Sbjct: 1   MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTE+  WEEI++KYD LFE NA+ GSFYLQSKVHRAKE LE ++ S+G   PS
Sbjct: 61  ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS 116

[Close]

BLAST of Csa1G011490 vs. TAIR10
Match: AT5G61880.1 (AT5G61880.1 Protein Transporter, Pam16)

HSP 1 Score: 127.9 bits (320), Expect = 4.3e-30
Identity = 68/107 (63.55%), Postives = 81/107 (75.70%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAA++LA +IV GS +I RA  QAY+QA+ NAS +GVA E  + T++R   +  E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQ-TIKRGLTI-GEAEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLH 108
           ILGVTE+  W+EI+KKYD LFERNAQ GSFYLQSKVHRAKE LET +
Sbjct: 61  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAY 105

[Close]

BLAST of Csa1G011490 vs. NCBI nr
Match: gi|778656004|ref|XP_011660201.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 2.7e-58
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPSCVS 120
           ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPSCVS
Sbjct: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPSCVS 119

[Close]

BLAST of Csa1G011490 vs. NCBI nr
Match: gi|659106003|ref|XP_008453226.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like isoform X1 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-51
Identity = 106/116 (91.38%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAK+LAHLIVSGSV+IGRA+AQAYQQA+RNAS SGVAQETI+NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKVLAHLIVSGSVIIGRAIAQAYQQALRNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTEEMPWEEIVKKYD+LFERNAQTGSFYLQSKVHRAKERLETL+HSK QD PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDSLFERNAQTGSFYLQSKVHRAKERLETLYHSKDQDVPS 116

[Close]

BLAST of Csa1G011490 vs. NCBI nr
Match: gi|659127284|ref|XP_008463624.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-45
Identity = 96/116 (82.76%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQET++NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTEE PWEE+VKKYDALFERNAQTGSFYLQSKVHRAKERLETL+  KGQD PS
Sbjct: 61  ILGVTEETPWEEVVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQIKGQDAPS 116

[Close]

BLAST of Csa1G011490 vs. NCBI nr
Match: gi|449443552|ref|XP_004139541.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.4e-45
Identity = 95/116 (81.90%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQET++NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTEE PWEE+ KKYDALFERNAQTGSFYLQSKVHRAKERLETL+ +KGQD PS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]

BLAST of Csa1G011490 vs. NCBI nr
Match: gi|802559894|ref|XP_012066242.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas])

HSP 1 Score: 172.6 bits (436), Expect = 4.3e-40
Identity = 87/116 (75.00%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQETI+NT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 117
           ILGVTEE  WEEIVKKYD LFERNA+ GSFYLQSKVHRAKE LE +H  KG+  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

The following BLAST results are available for this feature:

BLAST of Csa1G011490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM16_DANRE	1.1e-11	46.23	Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=...	[more]
TIM16_MOUSE	4.2e-11	44.34	Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN...	[more]
TIM16_HUMAN	5.5e-11	44.34	Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN...	[more]
TIM16_DROME	5.5e-11	36.97	Mitochondrial import inner membrane translocase subunit Tim16 OS=Drosophila mela...	[more]
TIM16_NEUCR	1.2e-10	39.82	Mitochondrial import inner membrane translocase subunit tim16 OS=Neurospora cras...	[more]

BLAST of Csa1G011490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSD2_CUCSA	1.9e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1	[more]
A0A0A0LW69_CUCSA	2.4e-45	81.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1	[more]
A0A067LED2_JATCU	3.0e-40	75.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1	[more]
B9IAD9_POPTR	1.5e-39	71.55	Magmas-like family protein OS=Populus trichocarpa GN=POPTR_0014s14920g PE=4 SV=1	[more]
A0A059AV82_EUCGR	1.9e-39	72.41	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1	[more]

BLAST of Csa1G011490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59280.1	3.3e-38	67.24	Protein Transporter, Pam16	[more]
AT5G61880.1	4.3e-30	63.55	Protein Transporter, Pam16	[more]

BLAST of Csa1G011490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656004\|ref\|XP_011660201.1\|	2.7e-58	100.00	PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [C...	[more]
gi\|659106003\|ref\|XP_008453226.1\|	1.1e-51	91.38	PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like is...	[more]
gi\|659127284\|ref\|XP_008463624.1\|	2.6e-45	82.76	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|449443552\|ref\|XP_004139541.1\|	3.4e-45	81.90	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|802559894\|ref\|XP_012066242.1\|	4.3e-40	75.00	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatrop...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005341	Tim16

Vocabulary: **Cellular Component**
Term	Definition
GO:0005744	mitochondrial inner membrane presequence translocase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0030150	protein import into mitochondrial matrix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU123100	cucumber EST collection version 3.0	transcribed_cluster
CU144824	cucumber EST collection version 3.0	transcribed_cluster
CU163158	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G011490.1	Csa1G011490.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU123100	CU123100	transcribed_cluster
CU144824	CU144824	transcribed_cluster
CU163158	CU163158	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005341	Mitochondrial import inner membrane translocase subunit Tim16	PANTHER	PTHR12388	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	coord: 1..106 score: 1.6
None	No IPR available	PANTHER	PTHR12388:SF2	SUBFAMILY NOT NAMED	coord: 1..106 score: 1.6
None	No IPR available	PFAM	PF03656	Pam16	coord: 1..105 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G011490	Cla019087	Watermelon (97103) v1	cuwmB094
Csa1G011490	MELO3C017198	Melon (DHL92) v3.5.1	cumeB054
Csa1G011490	ClCG06G015930	Watermelon (Charleston Gray)	cuwcgB081
Csa1G011490	Lsi06G014420	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G011490	MELO3C017198.2	Melon (DHL92) v3.6.1	cumedB046
Csa1G011490	Cla97C06G125510	Watermelon (97103) v2	cuwmbB078
Csa1G011490	Bhi02G000197	Wax gourd	cuwgoB095
Csa1G011490	CSPI01G02560	Wild cucumber (PI 183967)	cpicuB000
Csa1G011490	Cucsa.197950	Cucumber (Gy14) v1	cgycuB299
Csa1G011490	CsGy1G002590	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G011490	Melon (DHL92) v3.5.1	cumeB009
Csa1G011490	Melon (DHL92) v3.5.1	cumeB030
Csa1G011490	Watermelon (Charleston Gray)	cuwcgB058
Csa1G011490	Watermelon (Charleston Gray)	cuwcgB062
Csa1G011490	Watermelon (97103) v1	cuwmB037
Csa1G011490	Watermelon (97103) v1	cuwmB063
Csa1G011490	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G011490	Cucurbita pepo (Zucchini)	cpecuB509
Csa1G011490	Cucurbita pepo (Zucchini)	cpecuB536
Csa1G011490	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G011490	Bottle gourd (USVL1VR-Ls)	culsiB025
Csa1G011490	Bottle gourd (USVL1VR-Ls)	culsiB056
Csa1G011490	Cucumber (Gy14) v2	cgybcuB005
Csa1G011490	Melon (DHL92) v3.6.1	cumedB004
Csa1G011490	Melon (DHL92) v3.6.1	cumedB026
Csa1G011490	Silver-seed gourd	carcuB0053
Csa1G011490	Silver-seed gourd	carcuB0416
Csa1G011490	Silver-seed gourd	carcuB0493
Csa1G011490	Watermelon (97103) v2	cuwmbB055
Csa1G011490	Watermelon (97103) v2	cuwmbB060
Csa1G011490	Wax gourd	cuwgoB054
Csa1G011490	Wax gourd	cuwgoB070
Csa1G011490	Cucumber (Chinese Long) v2	cucuB000
Csa1G011490	Cucumber (Chinese Long) v2	cucuB029
Csa1G011490	Cucumber (Gy14) v1	cgycuB138
Csa1G011490	Cucumber (Gy14) v1	cgycuB404
Csa1G011490	Cucurbita maxima (Rimu)	cmacuB048
Csa1G011490	Cucurbita maxima (Rimu)	cmacuB097
Csa1G011490	Cucurbita maxima (Rimu)	cmacuB221
Csa1G011490	Cucurbita maxima (Rimu)	cmacuB429
Csa1G011490	Cucurbita maxima (Rimu)	cmacuB685
Csa1G011490	Cucurbita moschata (Rifu)	cmocuB076
Csa1G011490	Cucurbita moschata (Rifu)	cmocuB037
Csa1G011490	Cucurbita moschata (Rifu)	cmocuB210
Csa1G011490	Cucurbita moschata (Rifu)	cmocuB418
Csa1G011490	Cucurbita moschata (Rifu)	cmocuB673