CU144824 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU144824
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mitochondrial import inner membrane translocase subunit tim16
Location	Chr1 : 1614847 .. 1615926 (+)
Sequence length	227

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AACAAGCCATTCGAAATGCTTCAAATTCCGGTGTTGCTCAAGAAACTATACGAAACACTGTTCGTAGAGCAAGCAAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACAGAAGAAATGCCTTGGGAGGAAATTGTGAAGAAATATGATGCTATGTTTGAAAGGAATGCTCAAACTGGAAGCTTTTTATCTTCAGTCAAAAGTCCATAGAGACCAAA

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU144824 vs. TrEMBL
Match: A0A0A0LSD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEEMPWEEIVKKYDA+FERNAQTGSF
Sbjct: 50  SKVMTEQEARQILGVTEEMPWEEIVKKYDALFERNAQTGSF 90

Query: 133  192
           
Sbjct: 110  90

Query: 193  196
           
Sbjct: 170  90

[Close]

BLAST of CU144824 vs. TrEMBL
Match: A0A0A0LSD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 6.5e-01
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3


Query: 3  QAIRNASNSGVAQETIRNTV 62
          QAIRNASNSGVAQETIRNTV
Sbjct: 27 QAIRNASNSGVAQETIRNTV 46

HSP 2 Score: 79.0 bits (193), Expect = 2.8e-12
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEE PWEE+ KKYDA+FERNAQTGSF
Sbjct: 50  SKVMTEQEARQILGVTEETPWEEVAKKYDALFERNAQTGSF 90

Query: 133  192
           
Sbjct: 110  90

Query: 193  196
           
Sbjct: 170  90

[Close]

BLAST of CU144824 vs. TrEMBL
Match: A0A151R2T5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_041973 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEE PWEEI+KKYD +FE NA+ GSF
Sbjct: 51  SKVMTEQEARQILGVTEETPWEEIIKKYDTLFENNAKNGSF 91

Query: 133  192
           
Sbjct: 111  91

Query: 193  196
           
Sbjct: 171  91

[Close]

BLAST of CU144824 vs. TrEMBL
Match: A0A067LED2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEE  WEEIVKKYD +FERNA+ GSF
Sbjct: 50  SKVMTEQEARQILGVTEETAWEEIVKKYDTLFERNAKNGSF 90

Query: 133  192
           
Sbjct: 110  90

Query: 193  196
           
Sbjct: 170  90

[Close]

BLAST of CU144824 vs. TrEMBL
Match: A0A067LED2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1)

HSP 1 Score: 33.9 bits (76), Expect = 1.0e+02
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 3


Query: 3  QAIRNASNSGVAQETIRNTV 62
          QA+ NAS SGVAQETI+NT+
Sbjct: 27 QALANASKSGVAQETIQNTI 46

HSP 2 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEE PWEEI+KKYD +FE NA+ GSF
Sbjct: 39  SKVMTEQEARQILGVTEETPWEEIIKKYDNLFENNAKNGSF 79

Query: 133  192
           
Sbjct: 99   79

Query: 193  196
           
Sbjct: 159  79

[Close]

BLAST of CU144824 vs. NCBI nr
Match: gi|778656004|ref|XP_011660201.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEEMPWEEIVKKYDA+FERNAQTGSF
Sbjct: 50  SKVMTEQEARQILGVTEEMPWEEIVKKYDALFERNAQTGSF 90

Query: 133  192
           
Sbjct: 110  90

Query: 193  196
           
Sbjct: 170  90

[Close]

BLAST of CU144824 vs. NCBI nr
Match: gi|659106011|ref|XP_008453228.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim16-like isoform X2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 6.2e-13
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEEMPWEEIVKKYD++FERNAQTGSF
Sbjct: 37  SKVMTEQEARQILGVTEEMPWEEIVKKYDSLFERNAQTGSF 77

Query: 133  192
           
Sbjct: 97   77

Query: 193  196
           
Sbjct: 157  77

[Close]

BLAST of CU144824 vs. NCBI nr
Match: gi|659106003|ref|XP_008453226.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like isoform X1 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 6.2e-13
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEEMPWEEIVKKYD++FERNAQTGSF
Sbjct: 50  SKVMTEQEARQILGVTEEMPWEEIVKKYDSLFERNAQTGSF 90

Query: 133  192
           
Sbjct: 110  90

Query: 193  196
           
Sbjct: 170  90

[Close]

BLAST of CU144824 vs. NCBI nr
Match: gi|659127284|ref|XP_008463624.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEE PWEE+VKKYDA+FERNAQTGSF
Sbjct: 50  SKVMTEQEARQILGVTEETPWEEVVKKYDALFERNAQTGSF 90

Query: 133  192
           
Sbjct: 110  90

Query: 193  196
           
Sbjct: 170  90

[Close]

BLAST of CU144824 vs. NCBI nr
Match: gi|449443552|ref|XP_004139541.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-12
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1


Query: 73  AKVMTEQEARQILGVTEEMPWEEIVKKYDAMFERNAQTGSF 132
           +KVMTEQEARQILGVTEE PWEE+ KKYDA+FERNAQTGSF
Sbjct: 50  SKVMTEQEARQILGVTEETPWEEVAKKYDALFERNAQTGSF 90

Query: 133  192
           
Sbjct: 110  90

Query: 193  196
           
Sbjct: 170  90

The following BLAST results are available for this feature:

BLAST of CU144824 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSD2_CUCSA	1.5e-13	95.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1	[more]
A0A0A0LSD2_CUCSA	6.5e-01	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1	[more]
A0A151R2T5_CAJCA	1.2e-10	80.49	Uncharacterized protein OS=Cajanus cajan GN=KK1_041973 PE=4 SV=1	[more]
A0A067LED2_JATCU	2.0e-10	82.93	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1	[more]
A0A067LED2_JATCU	1.0e+02	75.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1	[more]

BLAST of CU144824 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656004\|ref\|XP_011660201.1\|	2.8e-13	95.12	PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [C...	[more]
gi\|659106011\|ref\|XP_008453228.1\|	6.2e-13	92.68	PREDICTED: mitochondrial import inner membrane translocase subunit Tim16-like is...	[more]
gi\|659106003\|ref\|XP_008453226.1\|	6.2e-13	92.68	PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like is...	[more]
gi\|659127284\|ref\|XP_008463624.1\|	1.8e-12	90.24	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|449443552\|ref\|XP_004139541.1\|	5.3e-12	87.80	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR005341	Tim16

Vocabulary: **Cellular Component**
Term	Definition
GO:0005744	mitochondrial inner membrane presequence translocase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0030150	protein import into mitochondrial matrix

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G011490	Csa1G011490	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0122324	G0122324	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005341	Mitochondrial import inner membrane translocase subunit Tim16	PANTHER	PTHR12388	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	coord: 27..65 score: 6.1
None	No IPR available	PANTHER	PTHR12388:SF2	SUBFAMILY NOT NAMED	coord: 27..65 score: 6.1