Csa1G009920 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G009920
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat-containing protein, putative; contains IPR002885 (Pentatricopeptide repeat)
Location	Chr1 : 1552947 .. 1554996 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATTTATGAGGTCATCAAGGGAATGAAAAAGGGGCAAAATTAGAGAAAATAAACAAGTCATCTTCTTCCCCTCTCTCACACTGCCGCCGCCCCCAACCCGGTCTCGTTTTCTGGCGAGAAACGGCAACGACCCACGCAGGTAGAAGTCGGTTGTTCTTCTCCGATGACCCGTTTACTTGCTAGCAGGTTCAGACCCACGATTTTGTGCCTGAGATTGGAGGCATTTTTACACACGCAGTCTTTTCCGTCTCCGGCGAATCTAAGAAACCACGTCGACGATTACATTACTCCGGCTATTGACGCGAGTAGACACCCACGCGATTATCTTTTCCTTGTGTTGGGTTTTCTACGTGCATAGCAATGCATGCACGCCATTTGTTCGATGAAATGTCGCTGAGAAGATGCGTTTCATTGTTGAAGTTAAAATGGGATAGCTTCATTGCGCAATCCGTCTGTACGCAACATCGGTTTTGTTCCCTTCATTCTACCGTAAACAATGGAGCTGCTGTATCAAAACTGTGTGAAGTGATTTCATGTACGATCGGTGGTTTAGATGAATTGGAATCCAGTTTGAACAAATGTACAATATCATTGACATCTTCATTAGTTACCCAAGTTATTGATTCTAGCAAAAATGAAGCTCCCACTAGAAGATTGCTTAGGTTTTTCTTGTGGTCACTCAAGAAGTTAAACCACACTTTAGAAGATGAAGATTTCAATAATGCCATTCGCTTTTTTGCTCAGAAGAAGGACTACACTGCCGTTAACATTTTACTTTCTAATCTTAAGAAAGCCGACCGGGCAATGGACGGCCAGACTTTCGGTTTTGTGGCTGAAGCTTTTGTCAAAATGGATAGAGAAGATGAAGCATTGGGTCTGTTCAAGAACCTAGAGAAGTACAAATGCCCACATGACCAATTTACTGTCGTAGCTATTATTACTGCTCTTTGTTCGAAAGGGCATGCTAAAAGAGCAGAAGGAGTTGTTTTGCACCACAAGGACAAGATTTCTAGCACAATGAGTTGCATCTATAGAAGCCTTCTATATGGATGGTCTATTAAGAAGAACACAAAAGAAGCAAGAAGAATACTGAAAGAAATGAAGTCAGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTTTCTCAAGTGTCTTTGTGAGAAAAATGTTGAGAAAAATCCTTCAGGTCTTGTGCCTGAATCCTTGAATGTGATGATGGAAATGAGATCCTACAAAATTTCTCCCAACTCAATCAGTTATAATATATTGTTATCATGTCTGTGCAAAACTAGGAGAGTTAAGGAATCTTGTAAAATCCTCGAGATGATGAAAAGAACGGGTTGTCAACCCGATTGCGTAAGCTATTATCTTATGGCGAGAGTGTTGTTCTTGACTGGAAGATTTGGGAAAGGGCGTGAAATTGTGGACGAGATGATTGAAGAAGGATTGACCCCAGATCGAAAATTCTACTACGATTTGATTGGTATTCTGTGTGGTGTAGAGAGAACAAATTATGCACTTGAGCTTTTTGAGAAGATGAAGAGAAGCTCATTGGGGGGTTATGGGCCAGTTTATGATGTGCTTATACCAAAGCTTTGTAGAGGAGGTGAATTTGAAATGGGGAGGCAACTGTGGGAGGAAGCCATGGCTATGGGTGTTTCGCTTAACTGCTCAAGTGAGATTTTGGATCCTTCAATCACAAAGGTTTTCAAGCCAACAAGAAAGATTGAGAATAAAATTGTTGAAGAATTCAATAGTGCTGAGAAGCAGAACAAAGCTGCAGCTGAGAAACCAAAAGAAAAGAGAAAGAAAGGTAAGTAAGAATCTGTCTTGAAAATAGCTTCTTGAATTTTTTGGAACTTAGTCAAATTAAATCATTTCATAGGCCTCCTTGTTCAAGATTTGTATAGTAACTTAATGATACACCATAAGATCTATCTATCTATCTATACACACAGAATGTACTCTTTTAAGCAAATCAGTTCTAGGCCTAAACGGTTTTGAATGGAGATTCGGAAGATTTTTATCCTAAGATTGTGAGCCTC

mRNA sequence

ATGCATGCACGCCATTTGTTCGATGAAATGTCGCTGAGAAGATGCGTTTCATTGTTGAAGTTAAAATGGGATAGCTTCATTGCGCAATCCGTCTGTACGCAACATCGGTTTTGTTCCCTTCATTCTACCGTAAACAATGGAGCTGCTGTATCAAAACTGTGTGAAGTGATTTCATGTACGATCGGTGGTTTAGATGAATTGGAATCCAGTTTGAACAAATGTACAATATCATTGACATCTTCATTAGTTACCCAAGTTATTGATTCTAGCAAAAATGAAGCTCCCACTAGAAGATTGCTTAGGTTTTTCTTGTGGTCACTCAAGAAGTTAAACCACACTTTAGAAGATGAAGATTTCAATAATGCCATTCGCTTTTTTGCTCAGAAGAAGGACTACACTGCCGTTAACATTTTACTTTCTAATCTTAAGAAAGCCGACCGGGCAATGGACGGCCAGACTTTCGGTTTTGTGGCTGAAGCTTTTGTCAAAATGGATAGAGAAGATGAAGCATTGGGTCTGTTCAAGAACCTAGAGAAGTACAAATGCCCACATGACCAATTTACTGTCGTAGCTATTATTACTGCTCTTTGTTCGAAAGGGCATGCTAAAAGAGCAGAAGGAGTTGTTTTGCACCACAAGGACAAGATTTCTAGCACAATGAGTTGCATCTATAGAAGCCTTCTATATGGATGGTCTATTAAGAAGAACACAAAAGAAGCAAGAAGAATACTGAAAGAAATGAAGTCAGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTTTCTCAAGTGTCTTTGTGAGAAAAATGTTGAGAAAAATCCTTCAGGTCTTGTGCCTGAATCCTTGAATGTGATGATGGAAATGAGATCCTACAAAATTTCTCCCAACTCAATCAGTTATAATATATTGTTATCATGTCTGTGCAAAACTAGGAGAGTTAAGGAATCTTGTAAAATCCTCGAGATGATGAAAAGAACGGGTTGTCAACCCGATTGCGTAAGCTATTATCTTATGGCGAGAGTGTTGTTCTTGACTGGAAGATTTGGGAAAGGGCGTGAAATTGTGGACGAGATGATTGAAGAAGGATTGACCCCAGATCGAAAATTCTACTACGATTTGATTGGTATTCTGTGTGGTGTAGAGAGAACAAATTATGCACTTGAGCTTTTTGAGAAGATGAAGAGAAGCTCATTGGGGGGTTATGGGCCAGTTTATGATGTGCTTATACCAAAGCTTTGTAGAGGAGGTGAATTTGAAATGGGGAGGCAACTGTGGGAGGAAGCCATGGCTATGGGTGTTTCGCTTAACTGCTCAAGTGAGATTTTGGATCCTTCAATCACAAAGGTTTTCAAGCCAACAAGAAAGATTGAGAATAAAATTGTTGAAGAATTCAATAGTGCTGAGAAGCAGAACAAAGCTGCAGCTGAGAAACCAAAAGAAAAGAGAAAGAAAGGTAAGTAA

Coding sequence (CDS)

ATGCATGCACGCCATTTGTTCGATGAAATGTCGCTGAGAAGATGCGTTTCATTGTTGAAGTTAAAATGGGATAGCTTCATTGCGCAATCCGTCTGTACGCAACATCGGTTTTGTTCCCTTCATTCTACCGTAAACAATGGAGCTGCTGTATCAAAACTGTGTGAAGTGATTTCATGTACGATCGGTGGTTTAGATGAATTGGAATCCAGTTTGAACAAATGTACAATATCATTGACATCTTCATTAGTTACCCAAGTTATTGATTCTAGCAAAAATGAAGCTCCCACTAGAAGATTGCTTAGGTTTTTCTTGTGGTCACTCAAGAAGTTAAACCACACTTTAGAAGATGAAGATTTCAATAATGCCATTCGCTTTTTTGCTCAGAAGAAGGACTACACTGCCGTTAACATTTTACTTTCTAATCTTAAGAAAGCCGACCGGGCAATGGACGGCCAGACTTTCGGTTTTGTGGCTGAAGCTTTTGTCAAAATGGATAGAGAAGATGAAGCATTGGGTCTGTTCAAGAACCTAGAGAAGTACAAATGCCCACATGACCAATTTACTGTCGTAGCTATTATTACTGCTCTTTGTTCGAAAGGGCATGCTAAAAGAGCAGAAGGAGTTGTTTTGCACCACAAGGACAAGATTTCTAGCACAATGAGTTGCATCTATAGAAGCCTTCTATATGGATGGTCTATTAAGAAGAACACAAAAGAAGCAAGAAGAATACTGAAAGAAATGAAGTCAGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTTTCTCAAGTGTCTTTGTGAGAAAAATGTTGAGAAAAATCCTTCAGGTCTTGTGCCTGAATCCTTGAATGTGATGATGGAAATGAGATCCTACAAAATTTCTCCCAACTCAATCAGTTATAATATATTGTTATCATGTCTGTGCAAAACTAGGAGAGTTAAGGAATCTTGTAAAATCCTCGAGATGATGAAAAGAACGGGTTGTCAACCCGATTGCGTAAGCTATTATCTTATGGCGAGAGTGTTGTTCTTGACTGGAAGATTTGGGAAAGGGCGTGAAATTGTGGACGAGATGATTGAAGAAGGATTGACCCCAGATCGAAAATTCTACTACGATTTGATTGGTATTCTGTGTGGTGTAGAGAGAACAAATTATGCACTTGAGCTTTTTGAGAAGATGAAGAGAAGCTCATTGGGGGGTTATGGGCCAGTTTATGATGTGCTTATACCAAAGCTTTGTAGAGGAGGTGAATTTGAAATGGGGAGGCAACTGTGGGAGGAAGCCATGGCTATGGGTGTTTCGCTTAACTGCTCAAGTGAGATTTTGGATCCTTCAATCACAAAGGTTTTCAAGCCAACAAGAAAGATTGAGAATAAAATTGTTGAAGAATTCAATAGTGCTGAGAAGCAGAACAAAGCTGCAGCTGAGAAACCAAAAGAAAAGAGAAAGAAAGGTAAGTAA

Protein sequence

MHARHLFDEMSLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCTIGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPKEKRKKGK*

Homology

[Close]

BLAST of Csa1G009920 vs. Swiss-Prot
Match: PP439_ARATH (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana GN=At5g61370 PE=2 SV=1)

HSP 1 Score: 570.5 bits (1469), Expect = 1.8e-161
Identity = 270/466 (57.94%), Postives = 355/466 (76.18%), Query Frame = 1


Query: 19  LKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCTIGGLDELESSLNKCTISL 78
           ++L   +++  +      FCS H    +  A+ ++  ++S  +GGLD+LE +LN+ ++S 
Sbjct: 6   VRLNRFTYLTSTAKLTRYFCSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSP 65

Query: 79  TSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAVNIL 138
           +S+LVTQVI+S KNE   RRLLRFF WS K L  +L D++FN  +R  A+KKD+TA+ IL
Sbjct: 66  SSNLVTQVIESCKNETSPRRLLRFFSWSCKSLGSSLHDKEFNYVLRVLAEKKDHTAMQIL 125

Query: 139 LSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCS 198
           LS+L+K +RAMD QTF  VAE  VK+ +E++A+G+FK L+K+ CP D FTV AII+ALCS
Sbjct: 126 LSDLRKENRAMDKQTFSIVAETLVKVGKEEDAIGIFKILDKFSCPQDGFTVTAIISALCS 185

Query: 199 KGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFC 258
           +GH KRA GV+ HHKD IS     +YRSLL+GWS+++N KEARR++++MKS G  PDLFC
Sbjct: 186 RGHVKRALGVMHHHKDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFC 245

Query: 259 YNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESC 318
           +N+ L CLCE+NV +NPSGLVPE+LN+M+EMRSYKI P S+SYNILLSCL +TRRV+ESC
Sbjct: 246 FNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESC 305

Query: 319 KILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGIL 378
           +ILE MKR+GC PD  SYY + RVL+LTGRFGKG +IVDEMIE G  P+RKFYYDLIG+L
Sbjct: 306 QILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVL 365

Query: 379 CGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNC 438
           CGVER N+AL+LFEKMKRSS+GGYG VYD+LIPKLC+GG FE GR+LWEEA+++ V+L+C
Sbjct: 366 CGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDVTLSC 425

Query: 439 SSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPKEKRK 485
           S  +LDPS+T+VFKP +  E   + +  +   +  A   K K K K
Sbjct: 426 SISLLDPSVTEVFKPMKMKEEAAMVDRRALNLKIHARMNKTKPKLK 471

[Close]

BLAST of Csa1G009920 vs. Swiss-Prot
Match: PP438_ARATH (Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis thaliana GN=PNM1 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-43
Identity = 116/415 (27.95%), Postives = 201/415 (48.43%), Query Frame = 1


Query: 76  ISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAV 135
           I+    L+ Q ++ S      R  L F  W     N +  DE  +  + +F ++KD+  +
Sbjct: 105 ITPNPDLILQTLNLSPEAG--RAALGFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGM 164

Query: 136 NILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEK-YKCPHDQFTVVAIIT 195
             ++S  K       G+T     +  V+  R  +    F+ +E  Y    D+ ++  ++ 
Sbjct: 165 LEIISKYKGI---AGGKTLESAIDRLVRAGRPKQVTDFFEKMENDYGLKRDKESLTLVVK 224

Query: 196 ALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMP 255
            LC KGHA  AE +V +  ++I    + I   L+ GW I +   EA R+  EM   G   
Sbjct: 225 KLCEKGHASIAEKMVKNTANEIFPDEN-ICDLLISGWCIAEKLDEATRLAGEMSRGGFEI 284

Query: 256 DLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRV 315
               YN  L C+C+   +K+P  L PE   V++EM    +  N+ ++N+L++ LCK RR 
Sbjct: 285 GTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNTETFNVLINNLCKIRRT 344

Query: 316 KESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTP--DRKFYY 375
           +E+  +   M   GCQPD  +Y ++ R L+   R G+G E++D+M   G     ++K YY
Sbjct: 345 EEAMTLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLNKKEYY 404

Query: 376 DLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAM 435
             + ILCG+ER  +A+ +F+ MK +        YD+L+ K+C   +      L++EA   
Sbjct: 405 GFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKK 464

Query: 436 GVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPKEKRKKGK 488
           G++++     +DP   K  K T+++++ +        K+ +   EK   K+K+ K
Sbjct: 465 GIAVSPKEYRVDPRFMK--KKTKEVDSNV--------KKRETLPEKTARKKKRLK 503

[Close]

BLAST of Csa1G009920 vs. Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-30
Identity = 90/371 (24.26%), Postives = 173/371 (46.63%), Query Frame = 1


Query: 66  ELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRF 125
           +LE +LN+  + L   L+ +V++   +        RFF+W+ K+  +    E + + ++ 
Sbjct: 99  KLELALNESGVELRPGLIERVLNRCGDAGNLG--YRFFVWAAKQPRYCHSIEVYKSMVKI 158

Query: 126 FAQKKDYTAVNILLSNLKKAD-RAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPH 185
            ++ + + AV  L+  ++K + + ++ + F  + + F   D   +A+ +   + K+    
Sbjct: 159 LSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEP 218

Query: 186 DQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRIL 245
           D++    ++ ALC  G  K A  +    + +    +   + SLLYGW       EA+ +L
Sbjct: 219 DEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLR-YFTSLLYGWCRVGKMMEAKYVL 278

Query: 246 KEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNIL 305
            +M   G  PD+  Y   L            +G + ++ +++ +MR     PN+  Y +L
Sbjct: 279 VQMNEAGFEPDIVDYTNLLSGYAN-------AGKMADAYDLLRDMRRRGFEPNANCYTVL 338

Query: 306 LSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGL 365
           +  LCK  R++E+ K+   M+R  C+ D V+Y  +       G+  K   ++D+MI++GL
Sbjct: 339 IQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGL 398

Query: 366 TPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQ 425
            P    Y  ++      E     LEL EKM++        +Y+V+I   C+ GE +   +
Sbjct: 399 MPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVR 458

Query: 426 LWEEAMAMGVS 436
           LW E    G+S
Sbjct: 459 LWNEMEENGLS 459

HSP 2 Score: 47.8 bits (112), Expect = 4.1e-04
Identity = 43/196 (21.94%), Postives = 75/196 (38.27%), Query Frame = 1


Query: 169 EALGLFKNLEKYKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLL 228
           +A  L +++ +     +      +I ALC     + A  V +  +          Y +L+
Sbjct: 305 DAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALV 364

Query: 229 YGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMME 288
            G+       +   +L +M   G MP    Y   +        EK  S    E L +M +
Sbjct: 365 SGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAH-----EKKES--FEECLELMEK 424

Query: 289 MRSYKISPNSISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGR 348
           MR  +  P+   YN+++   CK   VKE+ ++   M+  G  P   ++ +M   L   G 
Sbjct: 425 MRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGC 484

Query: 349 FGKGREIVDEMIEEGL 365
             +  +   EM+  GL
Sbjct: 485 LLEASDHFKEMVTRGL 493

[Close]

BLAST of Csa1G009920 vs. Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.2e-25
Identity = 89/377 (23.61%), Postives = 165/377 (43.77%), Query Frame = 1


Query: 119 FNNAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLE 178
           FN  I+   +        ++L ++       D +TF  V + +++    D AL + + + 
Sbjct: 192 FNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMV 251

Query: 179 KYKCPHDQFTVVAIITALCSKGHAKRAEGVV--LHHKDKISSTMSCIYRSLLYGWSIKKN 238
           ++ C     +V  I+   C +G  + A   +  + ++D         + +L+ G     +
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT-FNTLVNGLCKAGH 311

Query: 239 TKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISP 298
            K A  I+  M  +G  PD++ YN+ +  LC+        G V E++ V+ +M +   SP
Sbjct: 312 VKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL-------GEVKEAVEVLDQMITRDCSP 371

Query: 299 NSISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIV 358
           N+++YN L+S LCK  +V+E+ ++  ++   G  PD  ++  + + L LT       E+ 
Sbjct: 372 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 431

Query: 359 DEMIEEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRG 418
           +EM  +G  PD   Y  LI  LC   + + AL + ++M+ S        Y+ LI   C+ 
Sbjct: 432 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 491

Query: 419 GEFEMGRQLWEEAMAMGVSLN-----------CSS-------EILDPSITKVFKPTRKIE 476
            +     ++++E    GVS N           C S       +++D  I +  KP +   
Sbjct: 492 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 551

HSP 2 Score: 112.5 bits (280), Expect = 1.3e-23
Identity = 80/325 (24.62%), Postives = 139/325 (42.77%), Query Frame = 1


Query: 150 DGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCSKGHAKRAEGVV 209
           D  T+  V     K+    EA+ +   +    C  +  T   +I+ LC +   + A  + 
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388

Query: 210 LHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEK 269
                K      C + SL+ G  + +N + A  + +EM+S G  PD F YN  +  LC K
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448

Query: 270 NVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESCKILEMMKRTGC 329
                  G + E+LN++ +M     + + I+YN L+   CK  + +E+ +I + M+  G 
Sbjct: 449 -------GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGV 508

Query: 330 QPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVERTNYALE 389
             + V+Y  +   L  + R     +++D+MI EG  PD+  Y  L+   C       A +
Sbjct: 509 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAAD 568

Query: 390 LFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEILDPSITK 449
           + + M  +        Y  LI  LC+ G  E+  +L       G+  N +    +P I  
Sbjct: 569 IVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI--NLTPHAYNPVIQG 628

Query: 450 VFKPTRKIENKIVEEFNSAEKQNKA 475
           +F+  +  E   +  F    +QN+A
Sbjct: 629 LFRKRKTTE--AINLFREMLEQNEA 642

HSP 3 Score: 96.7 bits (239), Expect = 7.6e-19
Identity = 76/358 (21.23%), Postives = 152/358 (42.46%), Query Frame = 1


Query: 64  LDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAI 123
           L++++SS  +C +  ++ L+  +I+S         +L    W + +     +   +N  +
Sbjct: 106 LEDMKSS--RCEMGTSTFLI--LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRML 165

Query: 124 RFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCP 183
                      V I  + +       D  TF  + +A  +  +   A+ + +++  Y   
Sbjct: 166 NLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLV 225

Query: 184 HDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRI 243
            D+ T   ++     +G    A  +     +   S  +     +++G+  +   ++A   
Sbjct: 226 PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNF 285

Query: 244 LKEMKS-DGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYN 303
           ++EM + DG  PD + +NT +  LC+       +G V  ++ +M  M      P+  +YN
Sbjct: 286 IQEMSNQDGFFPDQYTFNTLVNGLCK-------AGHVKHAIEIMDVMLQEGYDPDVYTYN 345

Query: 304 ILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEE 363
            ++S LCK   VKE+ ++L+ M    C P+ V+Y  +   L    +  +  E+   +  +
Sbjct: 346 SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 405

Query: 364 GLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFE 421
           G+ PD   +  LI  LC       A+ELFE+M+          Y++LI  LC  G+ +
Sbjct: 406 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452

HSP 4 Score: 85.5 bits (210), Expect = 1.8e-15
Identity = 62/281 (22.06%), Postives = 119/281 (42.35%), Query Frame = 1


Query: 119 FNNAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLE 178
           FN+ I+     +++     L   ++      D  T+  + ++     + DEAL + K +E
Sbjct: 403 FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462

Query: 179 KYKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTK 238
              C     T   +I   C     + AE +    +    S  S  Y +L+ G    +  +
Sbjct: 463 LSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVE 522

Query: 239 EARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNS 298
           +A +++ +M  +G  PD + YN+ L   C         G + ++ +++  M S    P+ 
Sbjct: 523 DAAQLMDQMIMEGQKPDKYTYNSLLTHFCR-------GGDIKKAADIVQAMTSNGCEPDI 582

Query: 299 ISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDE 358
           ++Y  L+S LCK  RV+ + K+L  ++  G      +Y  + + LF   +  +   +  E
Sbjct: 583 VTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFRE 642

Query: 359 MIEEGLTPDRKFYYDLI--GILCG----VERTNYALELFEK 394
           M+E+   P     Y ++  G+  G     E  ++ +EL EK
Sbjct: 643 MLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEK 676

[Close]

BLAST of Csa1G009920 vs. Swiss-Prot
Match: PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.2e-25
Identity = 91/400 (22.75%), Postives = 176/400 (44.00%), Query Frame = 1


Query: 50  VSKLCEVISCTIGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKK 109
           + K+C+ ++      +++   L+KC + +T SLV QV+    N     +   FF+W+  +
Sbjct: 102 IDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNG--WNQAYGFFIWANSQ 161

Query: 110 LNHTLEDEDFNNAIRFFAQKKDYTAVNILLSNLKKADRA--MDGQTFGFVAEAFVKMDRE 169
             +      +N  +    + +++  +  L++ + K + +  +   T   V     K  + 
Sbjct: 162 TGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKY 221

Query: 170 DEALGLFKNLEK-YKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRS 229
           ++A+  F  +EK Y    D   + +++ AL  +   + A  V L   D I       +  
Sbjct: 222 NKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDART-FNI 281

Query: 230 LLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVM 289
           L++G+   +   +AR ++  MK     PD+  Y +F++  C++   +  +        ++
Sbjct: 282 LIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVN-------EML 341

Query: 290 MEMRSYKISPNSISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLT 349
            EMR    +PN ++Y I++  L K+++V E+  + E MK  GC PD   Y  +  +L  T
Sbjct: 342 EEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKT 401

Query: 350 GRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGP-- 409
           GRF    EI ++M  +G+  D   Y  +I       R   AL L ++M+        P  
Sbjct: 402 GRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNV 461

Query: 410 -VYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEIL 444
             Y  L+   C   + ++   L    +   VS++ S+ IL
Sbjct: 462 ETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYIL 491

[Close]

BLAST of Csa1G009920 vs. TrEMBL
Match: V4T153_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023621mg PE=4 SV=1)

HSP 1 Score: 635.2 bits (1637), Expect = 6.6e-179
Identity = 319/481 (66.32%), Postives = 390/481 (81.08%), Query Frame = 1


Query: 18  LLKLKWDSFIAQSVCTQ---HRFCSLHSTVNNGAA---VSKLCEVISCTIGGLDELESSL 77
           LLK KW S + Q V TQ   H   SL+S V +      + +LC+V+S TIGGLD+LE SL
Sbjct: 4   LLKPKWRSLLLQRVDTQKSEHLLLSLYSMVPSNQVSHELKELCKVVSSTIGGLDDLELSL 63

Query: 78  NKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKD 137
           N+ T SL+SSLVTQVIDS K+EAPTRRLLRFFLWS K L+ +LED+D+N+AIR FA+KKD
Sbjct: 64  NQFTGSLSSSLVTQVIDSCKHEAPTRRLLRFFLWSCKNLSASLEDKDYNHAIRVFAEKKD 123

Query: 138 YTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVA 197
           + A+NIL+S+L+K  R M+ Q+FG + E  VK+ REDEALG+FKNLEK+KC  D  TV A
Sbjct: 124 HMAMNILVSDLRKEGRVMETQSFGVLVETLVKLGREDEALGIFKNLEKFKCVQDSVTVSA 183

Query: 198 IITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDG 257
           I++ALC+KGHA+RAEGVV HHKDKIS    CIYRSL+YGWS+++N K AR+I+KEMKS G
Sbjct: 184 IVSALCAKGHARRAEGVVYHHKDKISGVELCIYRSLIYGWSMQENVKAARKIIKEMKSAG 243

Query: 258 TMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKT 317
            MPDLFCYNTFL+ LCE+N+++NPSGLVPE+LNVMMEMRSY+I+P SISYNILLSCL +T
Sbjct: 244 FMPDLFCYNTFLRGLCERNLKRNPSGLVPEALNVMMEMRSYRIAPTSISYNILLSCLGRT 303

Query: 318 RRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFY 377
           RRVKESC++LE MK++GC PD VSYYL+ARVL+L+GRFGKG +IVDEMIEEGL PDRKFY
Sbjct: 304 RRVKESCRVLEQMKKSGCAPDWVSYYLVARVLYLSGRFGKGNKIVDEMIEEGLIPDRKFY 363

Query: 378 YDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMA 437
           YDLIGILCGVER N+ALELFE+MKRSSLGGYGPVYDVLIPK+C+GG+F  GR+LW+EAM 
Sbjct: 364 YDLIGILCGVERVNFALELFERMKRSSLGGYGPVYDVLIPKVCQGGDFVKGRELWDEAMV 423

Query: 438 MGVSLNCSSEILDPSITKVFKPTRK-IENKIVEEFNSAEKQNKAAA----EKPKEKRKKG 488
           MG++L+CSS +LDPSIT+VF P RK  E  +     + E Q K       +K K K+KK 
Sbjct: 424 MGLTLSCSSNVLDPSITEVFHPRRKPTEGCLGSTTPNIEAQVKKTVIEVDKKKKSKKKKN 483

[Close]

BLAST of Csa1G009920 vs. TrEMBL
Match: A0A061FXY0_THECC (Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_014106 PE=4 SV=1)

HSP 1 Score: 635.2 bits (1637), Expect = 6.6e-179
Identity = 307/470 (65.32%), Postives = 384/470 (81.70%), Query Frame = 1


Query: 26  FIAQSVCTQ---HRFCSLHSTVNNGAAVSKLCEVISCTIGGLDELESSLNKCTISLTSSL 85
           F+ Q + TQ   + F S HST+       +LC+V+S ++GGLD+LESSLN+  +SL+  L
Sbjct: 13  FLTQVITTQKPKNLFHSPHSTITTPPEFEELCKVVSSSMGGLDDLESSLNRFKLSLSPLL 72

Query: 86  VTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAVNILLSNL 145
           VTQVI+S +NEAPTRRLLRFFLWS+K L+ +LED+D NN +R FA+KKD+TA+ IL+S++
Sbjct: 73  VTQVINSCENEAPTRRLLRFFLWSVKNLSSSLEDKDLNNVVRVFAKKKDHTAMGILVSDI 132

Query: 146 KKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCSKGHA 205
           +   R M+ QTF  VAE  VK+ REDEALG+FKNLEK+KCP D F++ AI+ ALC+KGHA
Sbjct: 133 RNRGRTMESQTFSVVAEMLVKLGREDEALGIFKNLEKFKCPRDSFSLTAIVNALCAKGHA 192

Query: 206 KRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTF 265
           ++AEGVV HHKD I+    CIYR LLYGWS+++N KEARR++KEMKS G   DL+CYNTF
Sbjct: 193 RKAEGVVYHHKDTIAGVEPCIYRCLLYGWSVQENVKEARRVIKEMKSAGFELDLYCYNTF 252

Query: 266 LKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESCKILE 325
           L+CLC KN ++NPSGLVPE+LNVMMEMRS +I+P S+SYNILLSCL +TRRVKESC+ILE
Sbjct: 253 LRCLCGKNAKRNPSGLVPEALNVMMEMRSQRIAPTSVSYNILLSCLGRTRRVKESCQILE 312

Query: 326 MMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVE 385
           +MK+ GC PD +SYYL+ARVL+LTGRFGKG +IVDEMIE+GLTPDRKFYYDLIG+LCGVE
Sbjct: 313 LMKKAGCAPDWISYYLVARVLYLTGRFGKGNKIVDEMIEQGLTPDRKFYYDLIGVLCGVE 372

Query: 386 RTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEI 445
           R N+ALELFE+MKRSSLGGYGPVYDVLIPKLCRGG+FE GR+LW+EA+A GVSL+CSS++
Sbjct: 373 RVNFALELFERMKRSSLGGYGPVYDVLIPKLCRGGDFEKGRELWDEAVATGVSLSCSSDV 432

Query: 446 LDPSITKVFKPTRKIENKIVEEFNSAE-----KQNKAAAEKPKEKRKKGK 488
           LDPSIT+VFKPTRK E   ++    A+     KQN    +K K+ +KK K
Sbjct: 433 LDPSITEVFKPTRKAEKVHLKGCTMAKSPVKNKQNTMKGKKYKKIKKKKK 482

[Close]

BLAST of Csa1G009920 vs. TrEMBL
Match: K7MKY1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G102300 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 9.0e-176
Identity = 305/475 (64.21%), Postives = 377/475 (79.37%), Query Frame = 1


Query: 17  SLLKLKWDSFIAQSVCTQHRFC---SLHSTVNNGAA---VSKLCEVISCTIGGLDELESS 76
           ++LK  W  F  Q++ T +      S +ST+ + +    + +LC ++  T+GGLDELE S
Sbjct: 7   AMLKPAWKRFWLQNMRTHNLQILPFSHYSTLQSMSVHPQLQELCSIVMSTVGGLDELELS 66

Query: 77  LNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKK 136
           LNK   SLTSSLV Q IDSSK+EA TRRLLRFFLWS K L+H LED+D+N+A+R FA+KK
Sbjct: 67  LNKFKDSLTSSLVAQAIDSSKHEAQTRRLLRFFLWSCKNLSHRLEDKDYNHALRVFAEKK 126

Query: 137 DYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVV 196
           DYTA++IL+ +LKK  RAMD +TF  VAE  VK+ +EDEALG+FKNL+KYKC  D+FTV 
Sbjct: 127 DYTAMDILMGDLKKEGRAMDAETFSLVAENLVKLGKEDEALGIFKNLDKYKCSIDEFTVT 186

Query: 197 AIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSD 256
           AI+ ALCSKGH KRAEGVV HH DKI+ T  CIYRSLLYGWS+++N KEARRI+KEMKS+
Sbjct: 187 AIVNALCSKGHGKRAEGVVWHHNDKITGTKPCIYRSLLYGWSVQRNVKEARRIIKEMKSN 246

Query: 257 GTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCK 316
           G +PDL CYNTFL+CLCE+N+  NPSGLVPE+LNVMMEM+S+ + P SISYNILLSCL K
Sbjct: 247 GVIPDLLCYNTFLRCLCERNLRHNPSGLVPEALNVMMEMKSHNVFPTSISYNILLSCLGK 306

Query: 317 TRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKF 376
           TRRVKESC+ILE MK +GC PD VSYYL+A+VLFL+GRFGKG+E+VD+MI +GL P+ KF
Sbjct: 307 TRRVKESCQILETMKISGCDPDWVSYYLVAKVLFLSGRFGKGKEMVDQMIGKGLVPNHKF 366

Query: 377 YYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAM 436
           YY LIGILCGVER NYALELFEKMK+SS+GGYGPVYDVLIPKLCRGG+FE GR+LW+EA 
Sbjct: 367 YYSLIGILCGVERVNYALELFEKMKKSSMGGYGPVYDVLIPKLCRGGDFEKGRELWDEAS 426

Query: 437 AMGVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPKEKRKK 486
            MG++L CS ++LDPSIT+V+KPTR  ++  V+   +   Q         + RKK
Sbjct: 427 GMGITLQCSEDVLDPSITEVYKPTRPEKSSHVDSSRAKSPQKLTKFSGKMKMRKK 481

[Close]

BLAST of Csa1G009920 vs. TrEMBL
Match: W9QUA2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008580 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 4.4e-175
Identity = 309/458 (67.47%), Postives = 370/458 (80.79%), Query Frame = 1


Query: 20  KLKWDSFIAQSVCTQ---HRFCSLHSTVNNGAAVSKLCEVISCTIGGLDELESSLNKCTI 79
           K +W  F+ +S   Q      C  +S +++ + + +LC ++S TIGGLD+LESSL+    
Sbjct: 6   KSRWHYFLLRSFTAQKFRQLSCLPNSNLSSASRLQELCTIVSRTIGGLDDLESSLSDFRG 65

Query: 80  SLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAVN 139
           SLTSSLVTQVIDS K EAPTRRLLRFFLWS K L   LED+D+N+AIR FA KKD+TA+ 
Sbjct: 66  SLTSSLVTQVIDSCKTEAPTRRLLRFFLWSHKNLKCDLEDKDYNHAIRVFAGKKDHTALE 125

Query: 140 ILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITAL 199
           IL+S+LKK  RA++ QT+  VAE  VK+ REDEALG+FKN +KYKCP + FTV A++ AL
Sbjct: 126 ILVSDLKKGGRALESQTYAIVAETLVKLGREDEALGIFKNSDKYKCPQNSFTVTAVVNAL 185

Query: 200 CSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDL 259
           C++GHAKRAEGVV HHKD+IS    CIYRSLLYGWS ++N KEARRI+KEMKS G  PDL
Sbjct: 186 CAQGHAKRAEGVVGHHKDRISGMERCIYRSLLYGWSEQENVKEARRIIKEMKSAGINPDL 245

Query: 260 FCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKE 319
           FCYNTFL+CLCE+N+++NPSGLVPE+LNVMMEMRSY I+PNSISYNILLSCL + RRVKE
Sbjct: 246 FCYNTFLRCLCERNLKRNPSGLVPEALNVMMEMRSYMITPNSISYNILLSCLGRARRVKE 305

Query: 320 SCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIG 379
           +C+ILE MK+ GC PD +SYYL+ RVL+LT RFGKG ++VDEMI EGL P+ KFYYDLIG
Sbjct: 306 ACQILERMKQAGCSPDWMSYYLVIRVLYLTMRFGKGNKLVDEMIGEGLVPNCKFYYDLIG 365

Query: 380 ILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSL 439
           +LCGVER  YALELFE MK+ SLGGYGPVYDVLIPKLCRGG+FE GR+LW EAM MGV  
Sbjct: 366 VLCGVERPYYALELFEHMKKRSLGGYGPVYDVLIPKLCRGGDFEKGRELWIEAMNMGVDF 425

Query: 440 NCSSEILDPSITKVFKPTRKIENKI-VEEFNSAEKQNK 474
            CSS++LDPSITKVFKPTRK E KI  EE  S+E +NK
Sbjct: 426 CCSSDVLDPSITKVFKPTRKEEEKISQEESTSSENKNK 463

[Close]

BLAST of Csa1G009920 vs. TrEMBL
Match: B9RLV3_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1471200 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 1.7e-174
Identity = 301/453 (66.45%), Postives = 375/453 (82.78%), Query Frame = 1


Query: 37  FCSLHSTVNNGAA---VSKLCEVISCTIGGLDELESSLNKCTISLTSSLVTQVIDSSKNE 96
           F  L+ST+++      + ++C+ +S +IGGLD+LESSLN    +LTS +VTQVID  K+E
Sbjct: 9   FVCLYSTISHNRVPLELQEICKAVSSSIGGLDDLESSLNGFRGNLTSQIVTQVIDCCKHE 68

Query: 97  APTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAVNILLSNLKKADRAMDGQT 156
           APTRRLLRFFLWS K+L+ +++DEDFN+AIR  A+KKD+TA+ IL+S+L+K  R M+ QT
Sbjct: 69  APTRRLLRFFLWSYKRLDFSMKDEDFNHAIRVLAEKKDHTAMQILISDLRKEGRVMEPQT 128

Query: 157 FGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHK 216
           FG VAEA VK+ REDEALG+FKNL+K+KCP D  TV AIITALC++GHAK+A GVVLHHK
Sbjct: 129 FGLVAEALVKLGREDEALGIFKNLDKFKCPQDCETVTAIITALCAEGHAKKAYGVVLHHK 188

Query: 217 DKISSTMS-CIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVE 276
           DK+S  +  CIYRSL+YGWS++KN K AR +++EMK +G  PDLFCYNTFL+CLCE+NVE
Sbjct: 189 DKLSEVIRPCIYRSLIYGWSMQKNVKRAREVIQEMKRNGIKPDLFCYNTFLRCLCERNVE 248

Query: 277 KNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESCKILEMMKRTGCQPD 336
           +NPSGLVPESLNVMMEMRSY+I PNSISYNILLSCL + RRV+ESCKILE+MK++ C PD
Sbjct: 249 RNPSGLVPESLNVMMEMRSYRIEPNSISYNILLSCLGRVRRVQESCKILELMKKSSCAPD 308

Query: 337 CVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVERTNYALELFE 396
            VSYYL+A+VL+LTGRFGKG +IVDEMIE  L PDRKFYYDLIGILCGVER N+AL+LF+
Sbjct: 309 WVSYYLVAKVLYLTGRFGKGNKIVDEMIERRLVPDRKFYYDLIGILCGVERVNFALKLFD 368

Query: 397 KMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEILDPSITKVFK 456
           +MKRSS GGYGPVYD+LIPKLC GG FE G++LW+EAMAMGV+++CSSE+LDPSITKVF+
Sbjct: 369 QMKRSSSGGYGPVYDLLIPKLCIGGNFEKGKELWDEAMAMGVTVHCSSEVLDPSITKVFE 428

Query: 457 PTRKIENKIVEEFNSAEKQNKAAAEKPKEKRKK 486
           PTRK+E +         K N     K +E+ +K
Sbjct: 429 PTRKVEEEEEVRLQDCIKSN---VPKTRERVRK 458

[Close]

BLAST of Csa1G009920 vs. TAIR10
Match: AT5G61370.1 (AT5G61370.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 570.5 bits (1469), Expect = 1.0e-162
Identity = 270/466 (57.94%), Postives = 355/466 (76.18%), Query Frame = 1


Query: 19  LKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCTIGGLDELESSLNKCTISL 78
           ++L   +++  +      FCS H    +  A+ ++  ++S  +GGLD+LE +LN+ ++S 
Sbjct: 6   VRLNRFTYLTSTAKLTRYFCSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSP 65

Query: 79  TSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAVNIL 138
           +S+LVTQVI+S KNE   RRLLRFF WS K L  +L D++FN  +R  A+KKD+TA+ IL
Sbjct: 66  SSNLVTQVIESCKNETSPRRLLRFFSWSCKSLGSSLHDKEFNYVLRVLAEKKDHTAMQIL 125

Query: 139 LSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCS 198
           LS+L+K +RAMD QTF  VAE  VK+ +E++A+G+FK L+K+ CP D FTV AII+ALCS
Sbjct: 126 LSDLRKENRAMDKQTFSIVAETLVKVGKEEDAIGIFKILDKFSCPQDGFTVTAIISALCS 185

Query: 199 KGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFC 258
           +GH KRA GV+ HHKD IS     +YRSLL+GWS+++N KEARR++++MKS G  PDLFC
Sbjct: 186 RGHVKRALGVMHHHKDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFC 245

Query: 259 YNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESC 318
           +N+ L CLCE+NV +NPSGLVPE+LN+M+EMRSYKI P S+SYNILLSCL +TRRV+ESC
Sbjct: 246 FNSLLTCLCERNVNRNPSGLVPEALNIMLEMRSYKIQPTSMSYNILLSCLGRTRRVRESC 305

Query: 319 KILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGIL 378
           +ILE MKR+GC PD  SYY + RVL+LTGRFGKG +IVDEMIE G  P+RKFYYDLIG+L
Sbjct: 306 QILEQMKRSGCDPDTGSYYFVVRVLYLTGRFGKGNQIVDEMIERGFRPERKFYYDLIGVL 365

Query: 379 CGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNC 438
           CGVER N+AL+LFEKMKRSS+GGYG VYD+LIPKLC+GG FE GR+LWEEA+++ V+L+C
Sbjct: 366 CGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDVTLSC 425

Query: 439 SSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPKEKRK 485
           S  +LDPS+T+VFKP +  E   + +  +   +  A   K K K K
Sbjct: 426 SISLLDPSVTEVFKPMKMKEEAAMVDRRALNLKIHARMNKTKPKLK 471

[Close]

BLAST of Csa1G009920 vs. TAIR10
Match: AT5G60960.1 (AT5G60960.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 178.7 bits (452), Expect = 8.6e-45
Identity = 116/415 (27.95%), Postives = 201/415 (48.43%), Query Frame = 1


Query: 76  ISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAV 135
           I+    L+ Q ++ S      R  L F  W     N +  DE  +  + +F ++KD+  +
Sbjct: 105 ITPNPDLILQTLNLSPEAG--RAALGFNEWLDSNSNFSHTDETVSFFVDYFGRRKDFKGM 164

Query: 136 NILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEK-YKCPHDQFTVVAIIT 195
             ++S  K       G+T     +  V+  R  +    F+ +E  Y    D+ ++  ++ 
Sbjct: 165 LEIISKYKGI---AGGKTLESAIDRLVRAGRPKQVTDFFEKMENDYGLKRDKESLTLVVK 224

Query: 196 ALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMP 255
            LC KGHA  AE +V +  ++I    + I   L+ GW I +   EA R+  EM   G   
Sbjct: 225 KLCEKGHASIAEKMVKNTANEIFPDEN-ICDLLISGWCIAEKLDEATRLAGEMSRGGFEI 284

Query: 256 DLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRV 315
               YN  L C+C+   +K+P  L PE   V++EM    +  N+ ++N+L++ LCK RR 
Sbjct: 285 GTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRNTETFNVLINNLCKIRRT 344

Query: 316 KESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTP--DRKFYY 375
           +E+  +   M   GCQPD  +Y ++ R L+   R G+G E++D+M   G     ++K YY
Sbjct: 345 EEAMTLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLNKKEYY 404

Query: 376 DLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAM 435
             + ILCG+ER  +A+ +F+ MK +        YD+L+ K+C   +      L++EA   
Sbjct: 405 GFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYKEAAKK 464

Query: 436 GVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPKEKRKKGK 488
           G++++     +DP   K  K T+++++ +        K+ +   EK   K+K+ K
Sbjct: 465 GIAVSPKEYRVDPRFMK--KKTKEVDSNV--------KKRETLPEKTARKKKRLK 503

[Close]

BLAST of Csa1G009920 vs. TAIR10
Match: AT5G65820.1 (AT5G65820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 8.3e-32
Identity = 90/371 (24.26%), Postives = 173/371 (46.63%), Query Frame = 1


Query: 66  ELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRF 125
           +LE +LN+  + L   L+ +V++   +        RFF+W+ K+  +    E + + ++ 
Sbjct: 99  KLELALNESGVELRPGLIERVLNRCGDAGNLG--YRFFVWAAKQPRYCHSIEVYKSMVKI 158

Query: 126 FAQKKDYTAVNILLSNLKKAD-RAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPH 185
            ++ + + AV  L+  ++K + + ++ + F  + + F   D   +A+ +   + K+    
Sbjct: 159 LSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEP 218

Query: 186 DQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRIL 245
           D++    ++ ALC  G  K A  +    + +    +   + SLLYGW       EA+ +L
Sbjct: 219 DEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLR-YFTSLLYGWCRVGKMMEAKYVL 278

Query: 246 KEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNIL 305
            +M   G  PD+  Y   L            +G + ++ +++ +MR     PN+  Y +L
Sbjct: 279 VQMNEAGFEPDIVDYTNLLSGYAN-------AGKMADAYDLLRDMRRRGFEPNANCYTVL 338

Query: 306 LSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGL 365
           +  LCK  R++E+ K+   M+R  C+ D V+Y  +       G+  K   ++D+MI++GL
Sbjct: 339 IQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGL 398

Query: 366 TPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQ 425
            P    Y  ++      E     LEL EKM++        +Y+V+I   C+ GE +   +
Sbjct: 399 MPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVR 458

Query: 426 LWEEAMAMGVS 436
           LW E    G+S
Sbjct: 459 LWNEMEENGLS 459

HSP 2 Score: 47.8 bits (112), Expect = 2.3e-05
Identity = 43/196 (21.94%), Postives = 75/196 (38.27%), Query Frame = 1


Query: 169 EALGLFKNLEKYKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLL 228
           +A  L +++ +     +      +I ALC     + A  V +  +          Y +L+
Sbjct: 305 DAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALV 364

Query: 229 YGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMME 288
            G+       +   +L +M   G MP    Y   +        EK  S    E L +M +
Sbjct: 365 SGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAH-----EKKES--FEECLELMEK 424

Query: 289 MRSYKISPNSISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGR 348
           MR  +  P+   YN+++   CK   VKE+ ++   M+  G  P   ++ +M   L   G 
Sbjct: 425 MRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGC 484

Query: 349 FGKGREIVDEMIEEGL 365
             +  +   EM+  GL
Sbjct: 485 LLEASDHFKEMVTRGL 493

[Close]

BLAST of Csa1G009920 vs. TAIR10
Match: AT3G53700.1 (AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-26
Identity = 89/377 (23.61%), Postives = 165/377 (43.77%), Query Frame = 1


Query: 119 FNNAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLE 178
           FN  I+   +        ++L ++       D +TF  V + +++    D AL + + + 
Sbjct: 192 FNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMV 251

Query: 179 KYKCPHDQFTVVAIITALCSKGHAKRAEGVV--LHHKDKISSTMSCIYRSLLYGWSIKKN 238
           ++ C     +V  I+   C +G  + A   +  + ++D         + +L+ G     +
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT-FNTLVNGLCKAGH 311

Query: 239 TKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISP 298
            K A  I+  M  +G  PD++ YN+ +  LC+        G V E++ V+ +M +   SP
Sbjct: 312 VKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL-------GEVKEAVEVLDQMITRDCSP 371

Query: 299 NSISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIV 358
           N+++YN L+S LCK  +V+E+ ++  ++   G  PD  ++  + + L LT       E+ 
Sbjct: 372 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 431

Query: 359 DEMIEEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRG 418
           +EM  +G  PD   Y  LI  LC   + + AL + ++M+ S        Y+ LI   C+ 
Sbjct: 432 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 491

Query: 419 GEFEMGRQLWEEAMAMGVSLN-----------CSS-------EILDPSITKVFKPTRKIE 476
            +     ++++E    GVS N           C S       +++D  I +  KP +   
Sbjct: 492 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 551

HSP 2 Score: 112.5 bits (280), Expect = 7.6e-25
Identity = 80/325 (24.62%), Postives = 139/325 (42.77%), Query Frame = 1


Query: 150 DGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCSKGHAKRAEGVV 209
           D  T+  V     K+    EA+ +   +    C  +  T   +I+ LC +   + A  + 
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388

Query: 210 LHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEK 269
                K      C + SL+ G  + +N + A  + +EM+S G  PD F YN  +  LC K
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448

Query: 270 NVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESCKILEMMKRTGC 329
                  G + E+LN++ +M     + + I+YN L+   CK  + +E+ +I + M+  G 
Sbjct: 449 -------GKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGV 508

Query: 330 QPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVERTNYALE 389
             + V+Y  +   L  + R     +++D+MI EG  PD+  Y  L+   C       A +
Sbjct: 509 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAAD 568

Query: 390 LFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEILDPSITK 449
           + + M  +        Y  LI  LC+ G  E+  +L       G+  N +    +P I  
Sbjct: 569 IVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI--NLTPHAYNPVIQG 628

Query: 450 VFKPTRKIENKIVEEFNSAEKQNKA 475
           +F+  +  E   +  F    +QN+A
Sbjct: 629 LFRKRKTTE--AINLFREMLEQNEA 642

HSP 3 Score: 96.7 bits (239), Expect = 4.3e-20
Identity = 76/358 (21.23%), Postives = 152/358 (42.46%), Query Frame = 1


Query: 64  LDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAI 123
           L++++SS  +C +  ++ L+  +I+S         +L    W + +     +   +N  +
Sbjct: 106 LEDMKSS--RCEMGTSTFLI--LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRML 165

Query: 124 RFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCP 183
                      V I  + +       D  TF  + +A  +  +   A+ + +++  Y   
Sbjct: 166 NLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLV 225

Query: 184 HDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRI 243
            D+ T   ++     +G    A  +     +   S  +     +++G+  +   ++A   
Sbjct: 226 PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNF 285

Query: 244 LKEMKS-DGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYN 303
           ++EM + DG  PD + +NT +  LC+       +G V  ++ +M  M      P+  +YN
Sbjct: 286 IQEMSNQDGFFPDQYTFNTLVNGLCK-------AGHVKHAIEIMDVMLQEGYDPDVYTYN 345

Query: 304 ILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEE 363
            ++S LCK   VKE+ ++L+ M    C P+ V+Y  +   L    +  +  E+   +  +
Sbjct: 346 SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 405

Query: 364 GLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFE 421
           G+ PD   +  LI  LC       A+ELFE+M+          Y++LI  LC  G+ +
Sbjct: 406 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452

HSP 4 Score: 85.5 bits (210), Expect = 9.9e-17
Identity = 62/281 (22.06%), Postives = 119/281 (42.35%), Query Frame = 1


Query: 119 FNNAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLE 178
           FN+ I+     +++     L   ++      D  T+  + ++     + DEAL + K +E
Sbjct: 403 FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462

Query: 179 KYKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTK 238
              C     T   +I   C     + AE +    +    S  S  Y +L+ G    +  +
Sbjct: 463 LSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVE 522

Query: 239 EARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNS 298
           +A +++ +M  +G  PD + YN+ L   C         G + ++ +++  M S    P+ 
Sbjct: 523 DAAQLMDQMIMEGQKPDKYTYNSLLTHFCR-------GGDIKKAADIVQAMTSNGCEPDI 582

Query: 299 ISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDE 358
           ++Y  L+S LCK  RV+ + K+L  ++  G      +Y  + + LF   +  +   +  E
Sbjct: 583 VTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFRE 642

Query: 359 MIEEGLTPDRKFYYDLI--GILCG----VERTNYALELFEK 394
           M+E+   P     Y ++  G+  G     E  ++ +EL EK
Sbjct: 643 MLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEK 676

[Close]

BLAST of Csa1G009920 vs. TAIR10
Match: AT3G22670.1 (AT3G22670.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-26
Identity = 91/400 (22.75%), Postives = 176/400 (44.00%), Query Frame = 1


Query: 50  VSKLCEVISCTIGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKK 109
           + K+C+ ++      +++   L+KC + +T SLV QV+    N     +   FF+W+  +
Sbjct: 102 IDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNG--WNQAYGFFIWANSQ 161

Query: 110 LNHTLEDEDFNNAIRFFAQKKDYTAVNILLSNLKKADRA--MDGQTFGFVAEAFVKMDRE 169
             +      +N  +    + +++  +  L++ + K + +  +   T   V     K  + 
Sbjct: 162 TGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKY 221

Query: 170 DEALGLFKNLEK-YKCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRS 229
           ++A+  F  +EK Y    D   + +++ AL  +   + A  V L   D I       +  
Sbjct: 222 NKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDART-FNI 281

Query: 230 LLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVM 289
           L++G+   +   +AR ++  MK     PD+  Y +F++  C++   +  +        ++
Sbjct: 282 LIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVN-------EML 341

Query: 290 MEMRSYKISPNSISYNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLT 349
            EMR    +PN ++Y I++  L K+++V E+  + E MK  GC PD   Y  +  +L  T
Sbjct: 342 EEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKT 401

Query: 350 GRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGP-- 409
           GRF    EI ++M  +G+  D   Y  +I       R   AL L ++M+        P  
Sbjct: 402 GRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNV 461

Query: 410 -VYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEIL 444
             Y  L+   C   + ++   L    +   VS++ S+ IL
Sbjct: 462 ETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYIL 491

[Close]

BLAST of Csa1G009920 vs. NCBI nr
Match: gi|449441065|ref|XP_004138304.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucumis sativus])

HSP 1 Score: 983.0 bits (2540), Expect = 1.9e-283
Identity = 487/487 (100.00%), Postives = 487/487 (100.00%), Query Frame = 1


Query: 1   MHARHLFDEMSLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT 60
           MHARHLFDEMSLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT
Sbjct: 1   MHARHLFDEMSLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT 60

Query: 61  IGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN 120
           IGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN
Sbjct: 61  IGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN 120

Query: 121 NAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKY 180
           NAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKY
Sbjct: 121 NAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKY 180

Query: 181 KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA 240
           KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA
Sbjct: 181 KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA 240

Query: 241 RRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSIS 300
           RRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSIS
Sbjct: 241 RRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSIS 300

Query: 301 YNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMI 360
           YNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMI
Sbjct: 301 YNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMI 360

Query: 361 EEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFE 420
           EEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFE
Sbjct: 361 EEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFE 420

Query: 421 MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPK 480
           MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPK
Sbjct: 421 MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPK 480

Query: 481 EKRKKGK 488
           EKRKKGK
Sbjct: 481 EKRKKGK 487

[Close]

BLAST of Csa1G009920 vs. NCBI nr
Match: gi|659105975|ref|XP_008453221.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucumis melo])

HSP 1 Score: 946.4 bits (2445), Expect = 1.9e-272
Identity = 464/486 (95.47%), Postives = 481/486 (98.97%), Query Frame = 1


Query: 1   MHARHLFDEMSLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT 60
           MHARH+FDEM LRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT
Sbjct: 1   MHARHMFDEMPLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT 60

Query: 61  IGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN 120
           IGGLDELESSLN+CTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN
Sbjct: 61  IGGLDELESSLNQCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN 120

Query: 121 NAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKY 180
           NAIRFFAQKKDYTA+NILLSNLKKADRAMDGQTF FVAEAFVKM+R+DEALGLFKNLEKY
Sbjct: 121 NAIRFFAQKKDYTAINILLSNLKKADRAMDGQTFSFVAEAFVKMNRDDEALGLFKNLEKY 180

Query: 181 KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA 240
           KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA
Sbjct: 181 KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA 240

Query: 241 RRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSIS 300
           RRILKEMKSDGTMPDLF YNTFLKCLCEKNVEKNPSGLVPE+LNVMMEMRSYKI+PNSIS
Sbjct: 241 RRILKEMKSDGTMPDLFSYNTFLKCLCEKNVEKNPSGLVPEALNVMMEMRSYKIAPNSIS 300

Query: 301 YNILLSCLCKTRRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMI 360
           YNILLSCLCKTRRVKESC+ILEMMKR+GC+PDCVSYYL+ARVLFLTGRFGKGREIVDEMI
Sbjct: 301 YNILLSCLCKTRRVKESCRILEMMKRSGCRPDCVSYYLVARVLFLTGRFGKGREIVDEMI 360

Query: 361 EEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFE 420
           EEGLTPDRKFYY+LIGILCGVERTNYA+ELFEKMKRSSLGGYGPVYDVLIPK+CRGG+FE
Sbjct: 361 EEGLTPDRKFYYELIGILCGVERTNYAVELFEKMKRSSLGGYGPVYDVLIPKVCRGGDFE 420

Query: 421 MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQNKAAAEKPK 480
           MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEE N+AEKQNKAAAEKP 
Sbjct: 421 MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEECNTAEKQNKAAAEKPN 480

Query: 481 EKRKKG 487
           +KRKKG
Sbjct: 481 KKRKKG 486

[Close]

BLAST of Csa1G009920 vs. NCBI nr
Match: gi|568884695|ref|XP_006494986.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Citrus sinensis])

HSP 1 Score: 637.9 bits (1644), Expect = 1.5e-179
Identity = 318/481 (66.11%), Postives = 392/481 (81.50%), Query Frame = 1


Query: 18  LLKLKWDSFIAQSVCT---QHRFCSLHSTVNNGAA---VSKLCEVISCTIGGLDELESSL 77
           LLK KW + + Q V T   +H   SL+STV +      + +LC+V+S TIGGLD+LE SL
Sbjct: 9   LLKPKWRTLLLQRVDTHNFEHLLLSLYSTVPSNQVSHELKELCKVVSSTIGGLDDLELSL 68

Query: 78  NKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKD 137
           N+ T SLTSSLVTQVIDS K EAPTRRLLRFFLWS K ++ +LED+D+N+AIR FA+K+D
Sbjct: 69  NQFTGSLTSSLVTQVIDSCKQEAPTRRLLRFFLWSCKNMSASLEDKDYNHAIRVFAEKRD 128

Query: 138 YTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVA 197
           +TA+NIL+S+L+K  R M+ Q+FG + E  VK+ REDEALG+FKNLEK+KC  D  TV A
Sbjct: 129 HTAMNILVSDLRKEGRVMESQSFGVLVETLVKLGREDEALGIFKNLEKFKCVQDSVTVSA 188

Query: 198 IITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDG 257
           I++ALC+KGHA+RAEGVV HHKDKIS    CIYRSL+YGWS+++N K AR+I+KEMKS G
Sbjct: 189 IVSALCAKGHARRAEGVVYHHKDKISGVELCIYRSLIYGWSMQENVKAARKIIKEMKSAG 248

Query: 258 TMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKT 317
            MPDLFCYNTFL+ LCE+N+++NPSGLVPE+LNVMMEMRSY+I+P SISYNILLSCL +T
Sbjct: 249 IMPDLFCYNTFLRGLCERNLKRNPSGLVPEALNVMMEMRSYRIAPTSISYNILLSCLGRT 308

Query: 318 RRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFY 377
           RRVKESC++LE MK++GC PD VSYYL+ARVL+L+GRFGKG +IVDEMIEEGL PDRKFY
Sbjct: 309 RRVKESCQVLEQMKKSGCAPDWVSYYLVARVLYLSGRFGKGNKIVDEMIEEGLIPDRKFY 368

Query: 378 YDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMA 437
           YDLIGILCGVER N+ALELFE+MKRSSLGGYGPVYDVLIPK+CRGG+F  GR+LW+EAM 
Sbjct: 369 YDLIGILCGVERVNFALELFERMKRSSLGGYGPVYDVLIPKVCRGGDFVKGRELWDEAMV 428

Query: 438 MGVSLNCSSEILDPSITKVFKPTRK-IENKIVEEFNSAEKQNKAAA----EKPKEKRKKG 488
           MG++L+CSS +LDPSI +VF+P RK  E+ +     + E Q K       +K K K+KK 
Sbjct: 429 MGLTLSCSSNVLDPSIIEVFQPRRKPTESCLGSTTPNIETQVKKTVIEVDKKKKSKKKKN 488

[Close]

BLAST of Csa1G009920 vs. NCBI nr
Match: gi|590668221|ref|XP_007037432.1| (Pentatricopeptide repeat superfamily protein [Theobroma cacao])

HSP 1 Score: 635.2 bits (1637), Expect = 9.5e-179
Identity = 307/470 (65.32%), Postives = 384/470 (81.70%), Query Frame = 1


Query: 26  FIAQSVCTQ---HRFCSLHSTVNNGAAVSKLCEVISCTIGGLDELESSLNKCTISLTSSL 85
           F+ Q + TQ   + F S HST+       +LC+V+S ++GGLD+LESSLN+  +SL+  L
Sbjct: 13  FLTQVITTQKPKNLFHSPHSTITTPPEFEELCKVVSSSMGGLDDLESSLNRFKLSLSPLL 72

Query: 86  VTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKDYTAVNILLSNL 145
           VTQVI+S +NEAPTRRLLRFFLWS+K L+ +LED+D NN +R FA+KKD+TA+ IL+S++
Sbjct: 73  VTQVINSCENEAPTRRLLRFFLWSVKNLSSSLEDKDLNNVVRVFAKKKDHTAMGILVSDI 132

Query: 146 KKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVAIITALCSKGHA 205
           +   R M+ QTF  VAE  VK+ REDEALG+FKNLEK+KCP D F++ AI+ ALC+KGHA
Sbjct: 133 RNRGRTMESQTFSVVAEMLVKLGREDEALGIFKNLEKFKCPRDSFSLTAIVNALCAKGHA 192

Query: 206 KRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDGTMPDLFCYNTF 265
           ++AEGVV HHKD I+    CIYR LLYGWS+++N KEARR++KEMKS G   DL+CYNTF
Sbjct: 193 RKAEGVVYHHKDTIAGVEPCIYRCLLYGWSVQENVKEARRVIKEMKSAGFELDLYCYNTF 252

Query: 266 LKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKTRRVKESCKILE 325
           L+CLC KN ++NPSGLVPE+LNVMMEMRS +I+P S+SYNILLSCL +TRRVKESC+ILE
Sbjct: 253 LRCLCGKNAKRNPSGLVPEALNVMMEMRSQRIAPTSVSYNILLSCLGRTRRVKESCQILE 312

Query: 326 MMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVE 385
           +MK+ GC PD +SYYL+ARVL+LTGRFGKG +IVDEMIE+GLTPDRKFYYDLIG+LCGVE
Sbjct: 313 LMKKAGCAPDWISYYLVARVLYLTGRFGKGNKIVDEMIEQGLTPDRKFYYDLIGVLCGVE 372

Query: 386 RTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEI 445
           R N+ALELFE+MKRSSLGGYGPVYDVLIPKLCRGG+FE GR+LW+EA+A GVSL+CSS++
Sbjct: 373 RVNFALELFERMKRSSLGGYGPVYDVLIPKLCRGGDFEKGRELWDEAVATGVSLSCSSDV 432

Query: 446 LDPSITKVFKPTRKIENKIVEEFNSAE-----KQNKAAAEKPKEKRKKGK 488
           LDPSIT+VFKPTRK E   ++    A+     KQN    +K K+ +KK K
Sbjct: 433 LDPSITEVFKPTRKAEKVHLKGCTMAKSPVKNKQNTMKGKKYKKIKKKKK 482

[Close]

BLAST of Csa1G009920 vs. NCBI nr
Match: gi|567896330|ref|XP_006440653.1| (hypothetical protein CICLE_v10023621mg [Citrus clementina])

HSP 1 Score: 635.2 bits (1637), Expect = 9.5e-179
Identity = 319/481 (66.32%), Postives = 390/481 (81.08%), Query Frame = 1


Query: 18  LLKLKWDSFIAQSVCTQ---HRFCSLHSTVNNGAA---VSKLCEVISCTIGGLDELESSL 77
           LLK KW S + Q V TQ   H   SL+S V +      + +LC+V+S TIGGLD+LE SL
Sbjct: 4   LLKPKWRSLLLQRVDTQKSEHLLLSLYSMVPSNQVSHELKELCKVVSSTIGGLDDLELSL 63

Query: 78  NKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIRFFAQKKD 137
           N+ T SL+SSLVTQVIDS K+EAPTRRLLRFFLWS K L+ +LED+D+N+AIR FA+KKD
Sbjct: 64  NQFTGSLSSSLVTQVIDSCKHEAPTRRLLRFFLWSCKNLSASLEDKDYNHAIRVFAEKKD 123

Query: 138 YTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKYKCPHDQFTVVA 197
           + A+NIL+S+L+K  R M+ Q+FG + E  VK+ REDEALG+FKNLEK+KC  D  TV A
Sbjct: 124 HMAMNILVSDLRKEGRVMETQSFGVLVETLVKLGREDEALGIFKNLEKFKCVQDSVTVSA 183

Query: 198 IITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEARRILKEMKSDG 257
           I++ALC+KGHA+RAEGVV HHKDKIS    CIYRSL+YGWS+++N K AR+I+KEMKS G
Sbjct: 184 IVSALCAKGHARRAEGVVYHHKDKISGVELCIYRSLIYGWSMQENVKAARKIIKEMKSAG 243

Query: 258 TMPDLFCYNTFLKCLCEKNVEKNPSGLVPESLNVMMEMRSYKISPNSISYNILLSCLCKT 317
            MPDLFCYNTFL+ LCE+N+++NPSGLVPE+LNVMMEMRSY+I+P SISYNILLSCL +T
Sbjct: 244 FMPDLFCYNTFLRGLCERNLKRNPSGLVPEALNVMMEMRSYRIAPTSISYNILLSCLGRT 303

Query: 318 RRVKESCKILEMMKRTGCQPDCVSYYLMARVLFLTGRFGKGREIVDEMIEEGLTPDRKFY 377
           RRVKESC++LE MK++GC PD VSYYL+ARVL+L+GRFGKG +IVDEMIEEGL PDRKFY
Sbjct: 304 RRVKESCRVLEQMKKSGCAPDWVSYYLVARVLYLSGRFGKGNKIVDEMIEEGLIPDRKFY 363

Query: 378 YDLIGILCGVERTNYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGEFEMGRQLWEEAMA 437
           YDLIGILCGVER N+ALELFE+MKRSSLGGYGPVYDVLIPK+C+GG+F  GR+LW+EAM 
Sbjct: 364 YDLIGILCGVERVNFALELFERMKRSSLGGYGPVYDVLIPKVCQGGDFVKGRELWDEAMV 423

Query: 438 MGVSLNCSSEILDPSITKVFKPTRK-IENKIVEEFNSAEKQNKAAA----EKPKEKRKKG 488
           MG++L+CSS +LDPSIT+VF P RK  E  +     + E Q K       +K K K+KK 
Sbjct: 424 MGLTLSCSSNVLDPSITEVFHPRRKPTEGCLGSTTPNIEAQVKKTVIEVDKKKKSKKKKN 483

The following BLAST results are available for this feature:

BLAST of Csa1G009920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP439_ARATH	1.8e-161	57.94	Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidop...	[more]
PP438_ARATH	1.5e-43	27.95	Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis t...	[more]
PP447_ARATH	1.5e-30	24.26	Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th...	[more]
PP281_ARATH	3.2e-25	23.61	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
PP248_ARATH	4.2e-25	22.75	Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidop...	[more]

BLAST of Csa1G009920 vs. TrEMBL


Match Name	E-value	Identity	Description
V4T153_9ROSI	6.6e-179	66.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023621mg PE=4 SV=1	[more]
A0A061FXY0_THECC	6.6e-179	65.32	Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_014106 PE...	[more]
K7MKY1_SOYBN	9.0e-176	64.21	Uncharacterized protein OS=Glycine max GN=GLYMA_17G102300 PE=4 SV=1	[more]
W9QUA2_9ROSA	4.4e-175	67.47	Uncharacterized protein OS=Morus notabilis GN=L484_008580 PE=4 SV=1	[more]
B9RLV3_RICCO	1.7e-174	66.45	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]

BLAST of Csa1G009920 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G61370.1	1.0e-162	57.94	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G60960.1	8.6e-45	27.95	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G65820.1	8.3e-32	24.26	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53700.1	1.8e-26	23.61	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G22670.1	2.4e-26	22.75	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Csa1G009920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441065\|ref\|XP_004138304.1\|	1.9e-283	100.00	PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial ...	[more]
gi\|659105975\|ref\|XP_008453221.1\|	1.9e-272	95.47	PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial ...	[more]
gi\|568884695\|ref\|XP_006494986.1\|	1.5e-179	66.11	PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial ...	[more]
gi\|590668221\|ref\|XP_007037432.1\|	9.5e-179	65.32	Pentatricopeptide repeat superfamily protein [Theobroma cacao]	[more]
gi\|567896330\|ref\|XP_006440653.1\|	9.5e-179	66.32	hypothetical protein CICLE_v10023621mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G009920.1	Csa1G009920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 374..397 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 296..340 score: 4.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 224..265 score: 8.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 223..255 score: 0.0024coord: 334..367 score: 2.0E-4coord: 405..438 score: 9.8E-4coord: 299..333 score: 3.9
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 185..215 score: 5.678coord: 220..254 score: 8.484coord: 150..184 score: 7.278coord: 297..331 score: 12.803coord: 255..296 score: 6.292coord: 332..366 score: 9.482coord: 402..436 score: 7.87coord: 367..401 score: 7
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 78..464 score: 1.0E
None	No IPR available	PANTHER	PTHR24015:SF620	SUBFAMILY NOT NAMED	coord: 78..464 score: 1.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G009920	Cla019096	Watermelon (97103) v1	cuwmB094
Csa1G009920	MELO3C017189	Melon (DHL92) v3.5.1	cumeB054
Csa1G009920	ClCG06G016020	Watermelon (Charleston Gray)	cuwcgB081
Csa1G009920	MELO3C017189.2	Melon (DHL92) v3.6.1	cumedB046
Csa1G009920	Cla97C06G125590	Watermelon (97103) v2	cuwmbB078
Csa1G009920	Bhi02G000206	Wax gourd	cuwgoB095
Csa1G009920	CSPI01G02490	Wild cucumber (PI 183967)	cpicuB000
Csa1G009920	Cucsa.197870	Cucumber (Gy14) v1	cgycuB299
Csa1G009920	CmaCh10G002050	Cucurbita maxima (Rimu)	cmacuB048
Csa1G009920	CmoCh10G002220	Cucurbita moschata (Rifu)	cmocuB037
Csa1G009920	CmoCh11G001830	Cucurbita moschata (Rifu)	cmocuB076
Csa1G009920	Cp4.1LG18g08000	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G009920	Carg17950	Silver-seed gourd	carcuB0493
Csa1G009920	Carg18204	Silver-seed gourd	carcuB0638

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G009920	Cucurbita maxima (Rimu)	cmacuB097
Csa1G009920	Cucurbita maxima (Rimu)	cmacuB429
Csa1G009920	Cucurbita maxima (Rimu)	cmacuB685
Csa1G009920	Cucurbita moschata (Rifu)	cmocuB418
Csa1G009920	Cucurbita moschata (Rifu)	cmocuB673
Csa1G009920	Melon (DHL92) v3.5.1	cumeB009
Csa1G009920	Melon (DHL92) v3.5.1	cumeB030
Csa1G009920	Watermelon (Charleston Gray)	cuwcgB058
Csa1G009920	Watermelon (Charleston Gray)	cuwcgB062
Csa1G009920	Watermelon (97103) v1	cuwmB037
Csa1G009920	Watermelon (97103) v1	cuwmB063
Csa1G009920	Cucurbita pepo (Zucchini)	cpecuB536
Csa1G009920	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G009920	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G009920	Bottle gourd (USVL1VR-Ls)	culsiB025
Csa1G009920	Bottle gourd (USVL1VR-Ls)	culsiB056
Csa1G009920	Cucumber (Gy14) v2	cgybcuB001
Csa1G009920	Cucumber (Gy14) v2	cgybcuB005
Csa1G009920	Melon (DHL92) v3.6.1	cumedB004
Csa1G009920	Melon (DHL92) v3.6.1	cumedB026
Csa1G009920	Silver-seed gourd	carcuB0053
Csa1G009920	Watermelon (97103) v2	cuwmbB055
Csa1G009920	Watermelon (97103) v2	cuwmbB060
Csa1G009920	Wax gourd	cuwgoB054
Csa1G009920	Wax gourd	cuwgoB070
Csa1G009920	Cucumber (Chinese Long) v2	cucuB000
Csa1G009920	Cucumber (Chinese Long) v2	cucuB029
Csa1G009920	Cucumber (Gy14) v1	cgycuB138
Csa1G009920	Cucumber (Gy14) v1	cgycuB404