Carg17950 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17950
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_114 : 408223 .. 409641 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGCACGCCAGATGTTCGATGAAAGGTCGCTGAGACGATGCGTCTCATTGTTGAAGTTAAAATGGGATTGCCTCTTTGTGCAATCCGTCTGTACGCAGCATCGCTTTTGTTCCCTTCATTCCACCGTCAAAAATGGAGCTTCTGTGTCAAAACTGTGTGAAGTGGTTTCGTGCACGATCGGAGGGTTAGATGAATTGGAAGCCACTCTGAACAAGAGCACAGTATCCTTGACATCTTCACTCGTTACCCAGGTTATTGATTCTTGCAAAAATGAAGCTCCCAATAGAAGATTGCTTAGGTTTTTCTCGTGGTCTCTCAAGAAATTAAACCACGATTTGGAAGATGAAGATTTCAATTATGCCATCCGCTTATTTGCTCAGAAGAAGGATTACACTGCCATTGATATTTTACTTTCTGATCTCAAGAAAGCTCGCCGCGCAATGGATGGCCAGACCTTCGGTCTTGTGGCTGAGGCTTTAGTCAAAATGGATAGAGAAGATGAAGCCCTAGGTCTGTTCAAGAACTTGGACAAGTACAAATGCCCACACGACCAATTCACTGTCACTGCTATTATCACTGCTCTCTGTGCAAAAGGGCATGCTAAAAGAGCAGAAGGGGTAGTCCTGCACCACAAGGACAAGATCTCTGGCACAATGAGTTGCATCTATAGAAGCCTTCTATATGGATGGTCCATTCAGAAGAACACTAAAGAAGCAAGAAGGATACTCAAAGAAATGAAGTCAGATGGAACCATGCCAGATTTGTTCAGCTACAACACTTTCCTCAGGTGCCTCTGCGAGCAGAATCTTAAGAAAAATCCTTCAGGTCTCGTGCCTGAAGCCTTGAATGTGATGATGGAAATGAGATCCTACAGCATTGCTCCCAATTCAATCAGTTATAACATACTGCTGTCATGTCTGGGCAGAGCCAGGAGAGTGAAGGAATCATGTAGAATCCTCGAGACAATGAAGCAAACCGGTTGTCCTCCCGATTGCATAAGCTACTATCTTGTGGCGAGAGTGCTGTTCCTGTCTGGAAGATTTGGGAAAGGGTGCAGAATTGTGGAGGAGATGATTGAAGAGGGGCTGATCCCGGATCGAAAATTCTACTATGATTTGATTGGTATTCTGTGTGGTGTTGAGAGTGAGAAGTATGCACTTGAGCTGTTTGAGAAGATGAAGAGAAGCTCACTGGGGGGTTATGGTCCAGTTTATGATGTGCTTATACCGAAGCTCTGCAGGGGAGGTGATTTTGAAATGGGGAGGCAACTGTGGGAGGAGGCCATGGCTATGGGCCTCACGCTTCGCTGCTCAAGCGATGTTTTGGATCCTTCAATCACCAAGGTATTCAAGCCAACAAGAAAGATTGACAATCAAAATCTTGAAGAATCCAATAGAGCTGAGAAGCAGAACTAA

mRNA sequence

ATGAACGCACGCCAGATGTTCGATGAAAGGTCGCTGAGACGATGCGTCTCATTGTTGAAGTTAAAATGGGATTGCCTCTTTGTGCAATCCGTCTGTACGCAGCATCGCTTTTGTTCCCTTCATTCCACCGTCAAAAATGGAGCTTCTGTGTCAAAACTGTGTGAAGTGGTTTCGTGCACGATCGGAGGGTTAGATGAATTGGAAGCCACTCTGAACAAGAGCACAGTATCCTTGACATCTTCACTCGTTACCCAGGTTATTGATTCTTGCAAAAATGAAGCTCCCAATAGAAGATTGCTTAGGTTTTTCTCGTGGTCTCTCAAGAAATTAAACCACGATTTGGAAGATGAAGATTTCAATTATGCCATCCGCTTATTTGCTCAGAAGAAGGATTACACTGCCATTGATATTTTACTTTCTGATCTCAAGAAAGCTCGCCGCGCAATGGATGGCCAGACCTTCGGTCTTGTGGCTGAGGCTTTAGTCAAAATGGATAGAGAAGATGAAGCCCTAGGTCTGTTCAAGAACTTGGACAAGTACAAATGCCCACACGACCAATTCACTGTCACTGCTATTATCACTGCTCTCTGTGCAAAAGGGCATGCTAAAAGAGCAGAAGGGGTAGTCCTGCACCACAAGGACAAGATCTCTGGCACAATGAGTTGCATCTATAGAAGCCTTCTATATGGATGGTCCATTCAGAAGAACACTAAAGAAGCAAGAAGGATACTCAAAGAAATGAAGTCAGATGGAACCATGCCAGATTTGTTCAGCTACAACACTTTCCTCAGGTGCCTCTGCGAGCAGAATCTTAAGAAAAATCCTTCAGGTCTCGTGCCTGAAGCCTTGAATGTGATGATGGAAATGAGATCCTACAGCATTGCTCCCAATTCAATCAGTTATAACATACTGCTGTCATGTCTGGGCAGAGCCAGGAGAGTGAAGGAATCATGTAGAATCCTCGAGACAATGAAGCAAACCGGTTGTCCTCCCGATTGCATAAGCTACTATCTTGTGGCGAGAGTGCTGTTCCTGTCTGGAAGATTTGGGAAAGGGTGCAGAATTGTGGAGGAGATGATTGAAGAGGGGCTGATCCCGGATCGAAAATTCTACTATGATTTGATTGGTATTCTGTGTGGTGTTGAGAGTGAGAAGTATGCACTTGAGCTGTTTGAGAAGATGAAGAGAAGCTCACTGGGGGGTTATGGTCCAGTTTATGATGTGCTTATACCGAAGCTCTGCAGGGGAGGTGATTTTGAAATGGGGAGGCAACTGTGGGAGGAGGCCATGGCTATGGGCCTCACGCTTCGCTGCTCAAGCGATGTTTTGGATCCTTCAATCACCAAGGTATTCAAGCCAACAAGAAAGATTGACAATCAAAATCTTGAAGAATCCAATAGAGCTGAGAAGCAGAACTAA

Coding sequence (CDS)

ATGAACGCACGCCAGATGTTCGATGAAAGGTCGCTGAGACGATGCGTCTCATTGTTGAAGTTAAAATGGGATTGCCTCTTTGTGCAATCCGTCTGTACGCAGCATCGCTTTTGTTCCCTTCATTCCACCGTCAAAAATGGAGCTTCTGTGTCAAAACTGTGTGAAGTGGTTTCGTGCACGATCGGAGGGTTAGATGAATTGGAAGCCACTCTGAACAAGAGCACAGTATCCTTGACATCTTCACTCGTTACCCAGGTTATTGATTCTTGCAAAAATGAAGCTCCCAATAGAAGATTGCTTAGGTTTTTCTCGTGGTCTCTCAAGAAATTAAACCACGATTTGGAAGATGAAGATTTCAATTATGCCATCCGCTTATTTGCTCAGAAGAAGGATTACACTGCCATTGATATTTTACTTTCTGATCTCAAGAAAGCTCGCCGCGCAATGGATGGCCAGACCTTCGGTCTTGTGGCTGAGGCTTTAGTCAAAATGGATAGAGAAGATGAAGCCCTAGGTCTGTTCAAGAACTTGGACAAGTACAAATGCCCACACGACCAATTCACTGTCACTGCTATTATCACTGCTCTCTGTGCAAAAGGGCATGCTAAAAGAGCAGAAGGGGTAGTCCTGCACCACAAGGACAAGATCTCTGGCACAATGAGTTGCATCTATAGAAGCCTTCTATATGGATGGTCCATTCAGAAGAACACTAAAGAAGCAAGAAGGATACTCAAAGAAATGAAGTCAGATGGAACCATGCCAGATTTGTTCAGCTACAACACTTTCCTCAGGTGCCTCTGCGAGCAGAATCTTAAGAAAAATCCTTCAGGTCTCGTGCCTGAAGCCTTGAATGTGATGATGGAAATGAGATCCTACAGCATTGCTCCCAATTCAATCAGTTATAACATACTGCTGTCATGTCTGGGCAGAGCCAGGAGAGTGAAGGAATCATGTAGAATCCTCGAGACAATGAAGCAAACCGGTTGTCCTCCCGATTGCATAAGCTACTATCTTGTGGCGAGAGTGCTGTTCCTGTCTGGAAGATTTGGGAAAGGGTGCAGAATTGTGGAGGAGATGATTGAAGAGGGGCTGATCCCGGATCGAAAATTCTACTATGATTTGATTGGTATTCTGTGTGGTGTTGAGAGTGAGAAGTATGCACTTGAGCTGTTTGAGAAGATGAAGAGAAGCTCACTGGGGGGTTATGGTCCAGTTTATGATGTGCTTATACCGAAGCTCTGCAGGGGAGGTGATTTTGAAATGGGGAGGCAACTGTGGGAGGAGGCCATGGCTATGGGCCTCACGCTTCGCTGCTCAAGCGATGTTTTGGATCCTTCAATCACCAAGGTATTCAAGCCAACAAGAAAGATTGACAATCAAAATCTTGAAGAATCCAATAGAGCTGAGAAGCAGAACTAA

Protein sequence

MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCTIGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKYKCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEARRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPEALNVMMEMRSYSIAPNSISYNILLSCLGRARRVKESCRILETMKQTGCPPDCISYYLVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEKQN

Homology

[Close]

BLAST of Carg17950 vs. NCBI nr
Match: XP_022921576.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita moschata])

HSP 1 Score: 719.2 bits (1855), Expect = 9.4e-204
Identity = 467/472 (98.94%), Postives = 468/472 (99.15%), Query Frame = 0


Query: 1   MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 60
           MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT
Sbjct: 8   MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 67

Query: 61  IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 120
           IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN
Sbjct: 68  IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 127

Query: 121 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 180
           YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY
Sbjct: 128 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 187

Query: 181 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 240
           KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA
Sbjct: 188 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 247

Query: 241 RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300
           RRILKEMKSDGTMPDLFSYNTFLRCL EQNLKKNPSGLV XXXXXXXXXXXXXXXXXXXX
Sbjct: 248 RRILKEMKSDGTMPDLFSYNTFLRCLSEQNLKKNPSGLVXXXXXXXXXXXXXXXXXXXXX 307

Query: 301 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXX  ARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 308 XXXXXXXXXXARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 367

Query: 361 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 420
           XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE
Sbjct: 368 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 427

Query: 421 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEKQN 473
           MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEES+RAEKQN
Sbjct: 428 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESSRAEKQN 479

[Close]

BLAST of Carg17950 vs. NCBI nr
Match: XP_022987424.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita maxima])

HSP 1 Score: 701.4 bits (1809), Expect = 2.0e-198
Identity = 458/472 (97.03%), Postives = 460/472 (97.46%), Query Frame = 0


Query: 1   MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 60
           M+AR MFDE SLRRCVSLLKLKWD  FVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT
Sbjct: 8   MHARHMFDEMSLRRCVSLLKLKWDSFFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 67

Query: 61  IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 120
           IGGLDELEATLNK TVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNH LEDEDFN
Sbjct: 68  IGGLDELEATLNKCTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHHLEDEDFN 127

Query: 121 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 180
           YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY
Sbjct: 128 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 187

Query: 181 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 240
           KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA
Sbjct: 188 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 247

Query: 241 RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300
           RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX
Sbjct: 248 RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 307

Query: 301 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 308 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 367

Query: 361 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 420
           XXXXXXXXXXXXXXXXX  GVE EKYALELFEKMKRSSLGGYGPVYDVLIPKLC GGDFE
Sbjct: 368 XXXXXXXXXXXXXXXXXXXGVEREKYALELFEKMKRSSLGGYGPVYDVLIPKLCSGGDFE 427

Query: 421 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEKQN 473
           MGRQLW EAMAMG+TLRCSSDVLDPSITKVFKPTRKIDNQNLEE NRAEKQN
Sbjct: 428 MGRQLWGEAMAMGITLRCSSDVLDPSITKVFKPTRKIDNQNLEECNRAEKQN 479

[Close]

BLAST of Carg17950 vs. NCBI nr
Match: XP_023516447.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 698.0 bits (1800), Expect = 2.2e-197
Identity = 456/472 (96.61%), Postives = 460/472 (97.46%), Query Frame = 0


Query: 1   MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 60
           M+ARQMFDE SLRRCVSL KLKW   FVQSVCT HRFCSLHSTV+NG SVSKLCEVVSCT
Sbjct: 8   MHARQMFDEMSLRRCVSLFKLKWASFFVQSVCTGHRFCSLHSTVRNGDSVSKLCEVVSCT 67

Query: 61  IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 120
           IGGLDELE TLNK  VSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN
Sbjct: 68  IGGLDELEGTLNKFPVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 127

Query: 121 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 180
           YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKM REDEALGLFKNLDKY
Sbjct: 128 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMGREDEALGLFKNLDKY 187

Query: 181 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 240
           KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA
Sbjct: 188 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 247

Query: 241 RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300
           RRILKEMKSDGTMPDLFS+NTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX
Sbjct: 248 RRILKEMKSDGTMPDLFSFNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 307

Query: 301 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 308 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 367

Query: 361 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 420
           XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE
Sbjct: 368 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 427

Query: 421 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEKQN 473
           MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQ LEES+RAEKQN
Sbjct: 428 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQGLEESSRAEKQN 479

[Close]

BLAST of Carg17950 vs. NCBI nr
Match: XP_022134610.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Momordica charantia])

HSP 1 Score: 598.2 bits (1541), Expect = 2.4e-167
Identity = 387/472 (81.99%), Postives = 406/472 (86.02%), Query Frame = 0


Query: 1   MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 60
           MNAR MFDE  LRRCVS LKLKW     QS+ T  RFCSLHSTV N ASV  LC+VVSC+
Sbjct: 1   MNARHMFDEIPLRRCVSALKLKWQSFITQSISTDLRFCSLHSTVTNAASVVDLCKVVSCS 60

Query: 61  IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 120
           IGGLDELE++LNK TVSLTS LVTQVIDSCKNEAP RRLLRFF WSLK L HDLEDEDFN
Sbjct: 61  IGGLDELESSLNKCTVSLTSPLVTQVIDSCKNEAPTRRLLRFFLWSLKNLKHDLEDEDFN 120

Query: 121 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 180
           +AIRLFAQKKDY AIDILLSDLKKA RAM+G+TFGLVAEALVK+DREDEALGLFKNLDKY
Sbjct: 121 HAIRLFAQKKDYNAIDILLSDLKKAGRAMEGETFGLVAEALVKLDREDEALGLFKNLDKY 180

Query: 181 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 240
           KCP DQFTVTAI+TALCAKGHAKRAEGVVLHH+DKISG+ SCIYRSLLYGW +Q N KEA
Sbjct: 181 KCPQDQFTVTAIVTALCAKGHAKRAEGVVLHHRDKISGSKSCIYRSLLYGWYVQNNAKEA 240

Query: 241 RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300
           RRILKEMKSDG MPDLF YNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 RRILKEMKSDGAMPDLFCYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXGR RR                   XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXGRTRRVKESCRILETMKRSGCRADXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 420
           XXXXXXXXXXXXXXXXX    E   YALE+ +KMKRSSLGGYGPVYDVLIPKLCRGGDFE
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXERVNYALEMLDKMKRSSLGGYGPVYDVLIPKLCRGGDFE 420

Query: 421 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEKQN 473
           MGRQLWEEAMAMGL LRCS +VLDPSITKV+ PTRK D++ LEE N AEKQN
Sbjct: 421 MGRQLWEEAMAMGLKLRCSREVLDPSITKVWLPTRKTDSKILEEVNGAEKQN 472

[Close]

BLAST of Carg17950 vs. NCBI nr
Match: XP_008453221.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucumis melo])

HSP 1 Score: 580.5 bits (1495), Expect = 5.2e-162
Identity = 395/472 (83.69%), Postives = 421/472 (89.19%), Query Frame = 0


Query: 1   MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 60
           M+AR MFDE  LRRCVSLLKLKWD    QSVCTQHRFCSLHSTV NGA+VSKLCEV+SCT
Sbjct: 1   MHARHMFDEMPLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT 60

Query: 61  IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 120
           IGGLDELE++LN+ T+SLTSSLVTQVIDS KNEAP RRLLRFF WSLKKLNH LEDEDFN
Sbjct: 61  IGGLDELESSLNQCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN 120

Query: 121 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 180
            AIR FAQKKDYTAI+ILLS+LKKA RAMDGQTF  VAEA VKM+R+DEALGLFKNL+KY
Sbjct: 121 NAIRFFAQKKDYTAINILLSNLKKADRAMDGQTFSFVAEAFVKMNRDDEALGLFKNLEKY 180

Query: 181 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 240
           KCPHDQFTV AIITALC+KGHAKRAEGVVLHHKDKIS TMSCIYRSLLYGWSI+KNTKEA
Sbjct: 181 KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA 240

Query: 241 RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300
           RRILKEMKSDGTMPDLFSYNTFL+CLCE+N++KNPSGLV XXXXXXXXXXXXXXXXXXXX
Sbjct: 241 RRILKEMKSDGTMPDLFSYNTFLKCLCEKNVEKNPSGLVXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXX   RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 420
           XXXXXXXXXXXXXXXXX                      GGYGPVYDVLIPK+CRGGDFE
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGYGPVYDVLIPKVCRGGDFE 420

Query: 421 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEKQN 473
           MGRQLWEEAMAMG++L CSS++LDPSITKVFKPTRKI+N+ +EE N AEKQN
Sbjct: 421 MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEECNTAEKQN 472

[Close]

BLAST of Carg17950 vs. TAIR10
Match: AT5G61370.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 357.8 bits (917), Expect = 1.0e-98
Identity = 276/419 (65.87%), Postives = 336/419 (80.19%), Query Frame = 0


Query: 37  FCSLHSTVKNGASVSKLCEVVSCTIGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPN 96
           FCS H   ++  ++ ++  +VS  +GGLD+LE  LN+ +VS +S+LVTQVI+SCKNE   
Sbjct: 24  FCSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSP 83

Query: 97  RRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGL 156
           RRLLRFFSWS K L   L D++FNY +R+ A+KKD+TA+ ILLSDL+K  RAMD QTF +
Sbjct: 84  RRLLRFFSWSCKSLGSSLHDKEFNYVLRVLAEKKDHTAMQILLSDLRKENRAMDKQTFSI 143

Query: 157 VAEALVKMDREDEALGLFKNLDKYKCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKI 216
           VAE LVK+ +E++A+G+FK LDK+ CP D FTVTAII+ALC++GH KRA GV+ HHKD I
Sbjct: 144 VAETLVKVGKEEDAIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVI 203

Query: 217 SGTMSCIYRSLLYGWSIQKNTKEARRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPS 276
           SG    +YRSLL+GWS+Q+N KEARR++++MKS G  PDLF +N+ L CLCE+N+ +NPS
Sbjct: 204 SGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPS 263

Query: 277 GLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXX 336
           GLV XXXXXXXXXXXXXXXXXXXXXXXXXXXXGR RRXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 264 GLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRTRRXXXXXXXXXXXXXXXXXXXXXXX 323

Query: 337 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKR 396
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   
Sbjct: 324 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 383

Query: 397 SSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTR 456
             +GGYG VYD+LIPKLC+GG+FE GR+LWEEA+++ +TL CS  +LDPS+T+VFKP +
Sbjct: 384 XXVGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDVTLSCSISLLDPSVTEVFKPMK 442

[Close]

BLAST of Carg17950 vs. TAIR10
Match: AT5G60960.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 6.9e-15
Identity = 94/403 (23.33%), Postives = 154/403 (38.21%), Query Frame = 0


Query: 71  LNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKK 130
           L+ S ++    L+ Q ++   +    R  L F  W     N    DE  ++ +  F ++K
Sbjct: 100 LSFSHITPNPDLILQTLN--LSPEAGRAALGFNEWLDSNSNFSHTDETVSFFVDYFGRRK 159

Query: 131 DYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDK-YKCPHDQFTV 190
           D+     +L  + K +    G+T     + LV+  R  +    F+ ++  Y    D+ ++
Sbjct: 160 DFKG---MLEIISKYKGIAGGKTLESAIDRLVRAGRPKQVTDFFEKMENDYGLKRDKESL 219

Query: 191 TAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEARRILKEMKS 250
           T ++  LC KGHA  AE +V +  ++I    + I   L+ GW I +   EA R+  EM  
Sbjct: 220 TLVVKKLCEKGHASIAEKMVKNTANEIFPDEN-ICDLLISGWCIAEKLDEATRLAGEMSR 279

Query: 251 DGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 310
            G      +YN  L C+C+   KK+P  L P                XXXXXXXXXXXX 
Sbjct: 280 GGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRXXXXXXXXXXXXX 339

Query: 311 RARR--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 370
              R                                                        
Sbjct: 340 XXXRTEEAMTLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLN 399

Query: 371 XXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWE 430
                     LCG+E  ++A+ +F+ MK +        YD+L+ K+C          L++
Sbjct: 400 KKEYYGFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYK 459

Query: 431 EAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEK 471
           EA   G+ +      +DP   K  K T+++D+   +     EK
Sbjct: 460 EAAKKGIAVSPKEYRVDPRFMK--KKTKEVDSNVKKRETLPEK 494

[Close]

BLAST of Carg17950 vs. TAIR10
Match: AT1G80550.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-07
Identity = 41/178 (23.03%), Postives = 80/178 (44.94%), Query Frame = 0


Query: 97  RRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKDYTAIDILLSDLKKARRAMDGQ-TFG 156
           ++ L FF+W  ++       E FN  I +  +  ++     L++ +     ++    TF 
Sbjct: 62  QKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFR 121

Query: 157 LVAEALVKMDREDEALGLFKNLDKYKCPHDQFTVTAIITALCAKGHAKRAEGV-----VL 216
           +V +  V      EA+  +  LD +    D+ +   ++ ALC   H   AE +     V+
Sbjct: 122 IVFKRYVTAHLVQEAIDAYDKLDDFNL-RDETSFYNLVDALCEHKHVVEAEELCFGKNVI 181

Query: 217 HHKDKISGTMSCIYRSLLYGWSIQKNTKEARRILKEMKSDGTMPDLFSYNTFLRCLCE 269
            +   +S T   I+  +L GWS      + +   K+M ++G   DLFSY+ ++  +C+
Sbjct: 182 GNGFSVSNTK--IHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCK 236

[Close]

BLAST of Carg17950 vs. TAIR10
Match: AT1G77405.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 6.4e-05
Identity = 41/192 (21.35%), Postives = 71/192 (36.98%), Query Frame = 0


Query: 97  RRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGL 156
           ++ L FF W       D  +        L A+  D+  +   L  + +     +  T   
Sbjct: 108 QKALEFFFWIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTAS 167

Query: 157 VAEALVKMDRE---DEALGLFKNLDKYKCPHDQFTVTAIITALCAKGHAKRAEGVVLHHK 216
           +   +  +  E    EAL  F  + +Y C  D +    II ALC  G+ K+A    L  +
Sbjct: 168 ITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKAR--FLLDQ 227

Query: 217 DKISGTMSCIYRSLLYGW---------------SIQKNTKEARRILKEMKSDGTMPDLFS 271
            ++ G                            +I++   EA R+ +EM   G +PD+ +
Sbjct: 228 MQLPGXXXXXXXXXXXXXXXXXXXXXXQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVT 287

[Close]

BLAST of Carg17950 vs. TAIR10
Match: AT1G80880.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-04
Identity = 44/169 (26.04%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 103 FSWSLKKLNHDLEDEDFNYAIRLFAQKKDYTAIDILLSDL----KKARRAMDGQTFGLVA 162
           F W  K+   D +  D    I +    + +     L+ D+    K  R+AM      L+ 
Sbjct: 144 FKWGEKRGCDDQKSCDL--MIWVLGNHQKFNIAWCLIRDMFNVSKDTRKAM-----FLMM 203

Query: 163 EALVKMDREDEALGLFKNLDKYK-CPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKIS 222
           +     +   +A+  F  +DK+K  P+D+     ++ ALC  GH ++AE  +L  K K+ 
Sbjct: 204 DRYAAANDTSQAIRTFDIMDKFKHTPYDE-AFQGLLCALCRHGHIEKAEEFMLASK-KLF 263

Query: 223 GTMSCIYRSLLYGW-SIQKNTKEARRILKEMKSDGTMPDLFSYNTFLRC 266
                 +  +L GW +I  +  EA+RI +EM +    P+  SY+  + C
Sbjct: 264 PVDVEGFNVILNGWCNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISC 303

[Close]

BLAST of Carg17950 vs. Swiss-Prot
Match: sp|Q9FLJ6|PP439_ARATH (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61370 PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.8e-97
Identity = 276/419 (65.87%), Postives = 336/419 (80.19%), Query Frame = 0


Query: 37  FCSLHSTVKNGASVSKLCEVVSCTIGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPN 96
           FCS H   ++  ++ ++  +VS  +GGLD+LE  LN+ +VS +S+LVTQVI+SCKNE   
Sbjct: 24  FCSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSP 83

Query: 97  RRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGL 156
           RRLLRFFSWS K L   L D++FNY +R+ A+KKD+TA+ ILLSDL+K  RAMD QTF +
Sbjct: 84  RRLLRFFSWSCKSLGSSLHDKEFNYVLRVLAEKKDHTAMQILLSDLRKENRAMDKQTFSI 143

Query: 157 VAEALVKMDREDEALGLFKNLDKYKCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKI 216
           VAE LVK+ +E++A+G+FK LDK+ CP D FTVTAII+ALC++GH KRA GV+ HHKD I
Sbjct: 144 VAETLVKVGKEEDAIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVI 203

Query: 217 SGTMSCIYRSLLYGWSIQKNTKEARRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPS 276
           SG    +YRSLL+GWS+Q+N KEARR++++MKS G  PDLF +N+ L CLCE+N+ +NPS
Sbjct: 204 SGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPS 263

Query: 277 GLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXX 336
           GLV XXXXXXXXXXXXXXXXXXXXXXXXXXXXGR RRXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 264 GLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRTRRXXXXXXXXXXXXXXXXXXXXXXX 323

Query: 337 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKR 396
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   
Sbjct: 324 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 383

Query: 397 SSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTR 456
             +GGYG VYD+LIPKLC+GG+FE GR+LWEEA+++ +TL CS  +LDPS+T+VFKP +
Sbjct: 384 XXVGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDVTLSCSISLLDPSVTEVFKPMK 442

[Close]

BLAST of Carg17950 vs. Swiss-Prot
Match: sp|Q9FME4|PP438_ARATH (Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PNM1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-13
Identity = 94/403 (23.33%), Postives = 154/403 (38.21%), Query Frame = 0


Query: 71  LNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKK 130
           L+ S ++    L+ Q ++   +    R  L F  W     N    DE  ++ +  F ++K
Sbjct: 100 LSFSHITPNPDLILQTLN--LSPEAGRAALGFNEWLDSNSNFSHTDETVSFFVDYFGRRK 159

Query: 131 DYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDK-YKCPHDQFTV 190
           D+     +L  + K +    G+T     + LV+  R  +    F+ ++  Y    D+ ++
Sbjct: 160 DFKG---MLEIISKYKGIAGGKTLESAIDRLVRAGRPKQVTDFFEKMENDYGLKRDKESL 219

Query: 191 TAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEARRILKEMKS 250
           T ++  LC KGHA  AE +V +  ++I    + I   L+ GW I +   EA R+  EM  
Sbjct: 220 TLVVKKLCEKGHASIAEKMVKNTANEIFPDEN-ICDLLISGWCIAEKLDEATRLAGEMSR 279

Query: 251 DGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 310
            G      +YN  L C+C+   KK+P  L P                XXXXXXXXXXXX 
Sbjct: 280 GGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLEMEFRGVPRXXXXXXXXXXXXX 339

Query: 311 RARR--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 370
              R                                                        
Sbjct: 340 XXXRTEEAMTLFGRMGEWGCQPDAETYLVLIRSLYQAARIGEGDEMIDKMKSAGYGELLN 399

Query: 371 XXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWE 430
                     LCG+E  ++A+ +F+ MK +        YD+L+ K+C          L++
Sbjct: 400 KKEYYGFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLYK 459

Query: 431 EAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEK 471
           EA   G+ +      +DP   K  K T+++D+   +     EK
Sbjct: 460 EAAKKGIAVSPKEYRVDPRFMK--KKTKEVDSNVKKRETLPEK 494

[Close]

BLAST of Carg17950 vs. Swiss-Prot
Match: sp|Q9M8M3|PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80550 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.6e-06
Identity = 41/178 (23.03%), Postives = 80/178 (44.94%), Query Frame = 0


Query: 97  RRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKDYTAIDILLSDLKKARRAMDGQ-TFG 156
           ++ L FF+W  ++       E FN  I +  +  ++     L++ +     ++    TF 
Sbjct: 62  QKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFR 121

Query: 157 LVAEALVKMDREDEALGLFKNLDKYKCPHDQFTVTAIITALCAKGHAKRAEGV-----VL 216
           +V +  V      EA+  +  LD +    D+ +   ++ ALC   H   AE +     V+
Sbjct: 122 IVFKRYVTAHLVQEAIDAYDKLDDFNL-RDETSFYNLVDALCEHKHVVEAEELCFGKNVI 181

Query: 217 HHKDKISGTMSCIYRSLLYGWSIQKNTKEARRILKEMKSDGTMPDLFSYNTFLRCLCE 269
            +   +S T   I+  +L GWS      + +   K+M ++G   DLFSY+ ++  +C+
Sbjct: 182 GNGFSVSNTK--IHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCK 236

[Close]

BLAST of Carg17950 vs. TrEMBL
Match: tr|A0A1S3BV55|A0A1S3BV55_CUCME (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494008 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 3.5e-162
Identity = 395/472 (83.69%), Postives = 421/472 (89.19%), Query Frame = 0


Query: 1   MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 60
           M+AR MFDE  LRRCVSLLKLKWD    QSVCTQHRFCSLHSTV NGA+VSKLCEV+SCT
Sbjct: 1   MHARHMFDEMPLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT 60

Query: 61  IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 120
           IGGLDELE++LN+ T+SLTSSLVTQVIDS KNEAP RRLLRFF WSLKKLNH LEDEDFN
Sbjct: 61  IGGLDELESSLNQCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN 120

Query: 121 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 180
            AIR FAQKKDYTAI+ILLS+LKKA RAMDGQTF  VAEA VKM+R+DEALGLFKNL+KY
Sbjct: 121 NAIRFFAQKKDYTAINILLSNLKKADRAMDGQTFSFVAEAFVKMNRDDEALGLFKNLEKY 180

Query: 181 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 240
           KCPHDQFTV AIITALC+KGHAKRAEGVVLHHKDKIS TMSCIYRSLLYGWSI+KNTKEA
Sbjct: 181 KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA 240

Query: 241 RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300
           RRILKEMKSDGTMPDLFSYNTFL+CLCE+N++KNPSGLV XXXXXXXXXXXXXXXXXXXX
Sbjct: 241 RRILKEMKSDGTMPDLFSYNTFLKCLCEKNVEKNPSGLVXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXX   RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 420
           XXXXXXXXXXXXXXXXX                      GGYGPVYDVLIPK+CRGGDFE
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGYGPVYDVLIPKVCRGGDFE 420

Query: 421 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEKQN 473
           MGRQLWEEAMAMG++L CSS++LDPSITKVFKPTRKI+N+ +EE N AEKQN
Sbjct: 421 MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEECNTAEKQN 472

[Close]

BLAST of Carg17950 vs. TrEMBL
Match: tr|A0A0A0LPF4|A0A0A0LPF4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 6.5e-153
Identity = 383/472 (81.14%), Postives = 408/472 (86.44%), Query Frame = 0


Query: 1   MNARQMFDERSLRRCVSLLKLKWDCLFVQSVCTQHRFCSLHSTVKNGASVSKLCEVVSCT 60
           M+AR +FDE SLRRCVSLLKLKWD    QSVCTQHRFCSLHSTV NGA+VSKLCEV+SCT
Sbjct: 1   MHARHLFDEMSLRRCVSLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCT 60

Query: 61  IGGLDELEATLNKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFN 120
           IGGLDELE++LNK T+SLTSSLVTQVIDS KNEAP RRLLRFF WSLKKLNH LEDEDFN
Sbjct: 61  IGGLDELESSLNKCTISLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFN 120

Query: 121 YAIRLFAQKKDYTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKY 180
            AIR FAQKKDYTA++ILLS+LKKA RAMDGQTFG VAEA VKMDREDEALGLFKNL+KY
Sbjct: 121 NAIRFFAQKKDYTAVNILLSNLKKADRAMDGQTFGFVAEAFVKMDREDEALGLFKNLEKY 180

Query: 181 KCPHDQFTVTAIITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEA 240
           KCPHDQFTV AIITALC+KGHAKRAEGVVLHHKDKIS TMSCIYRSLLYGWSI+KNTKEA
Sbjct: 181 KCPHDQFTVVAIITALCSKGHAKRAEGVVLHHKDKISSTMSCIYRSLLYGWSIKKNTKEA 240

Query: 241 RRILKEMKSDGTMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300
           RRILKEMKSDGTMPDLF YNTFL+CLCE+N++KNPSGLVPXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 RRILKEMKSDGTMPDLFCYNTFLKCLCEKNVEKNPSGLVPXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXX   RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXTRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFE 420
           XXXXXXXXXXXXXXXXX                                     RGG+FE
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGEFE 420

Query: 421 MGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEKQN 473
           MGRQLWEEAMAMG++L CSS++LDPSITKVFKPTRKI+N+ +EE N AEKQN
Sbjct: 421 MGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEEFNSAEKQN 472

[Close]

BLAST of Carg17950 vs. TrEMBL
Match: tr|A0A2I4GB17|A0A2I4GB17_9ROSI (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Juglans regia OX=51240 GN=LOC109006306 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.3e-128
Identity = 274/459 (59.69%), Postives = 319/459 (69.50%), Query Frame = 0


Query: 18  LLKLKWDCLFVQSVCT---QHRFCSLHSTVKNG---ASVSKLCEVVSCTIGGLDELEATL 77
           ++KLKW     Q +     + R+  L+ T++      ++ +LC +VS +IGGLDELE  L
Sbjct: 4   VMKLKWRNFLWQVIRAHKHERRYLCLYCTMQPNLPPPNLQELCSIVSSSIGGLDELELNL 63

Query: 78  NKSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKD 137
           NK + SLTSSLVTQVIDSCK+EAP+RRLLRFF W+ K LN+ LED+D+N++IR+FA+K D
Sbjct: 64  NKISASLTSSLVTQVIDSCKHEAPSRRLLRFFLWTRKNLNYSLEDKDYNHSIRVFAEKND 123

Query: 138 YTAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKYKCPHDQFTVTA 197
            TA+DIL+SDL+K  RAMD  TF +VAE LVK+ REDEALG+FKNLDKYKCP D+ TVTA
Sbjct: 124 RTAMDILISDLRKEGRAMDTHTFSVVAETLVKLGREDEALGIFKNLDKYKCPQDRVTVTA 183

Query: 198 IITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEARRILKEMKSDG 257
           IITALC KGHA+RAEGVV HHKDKISG   CIYRSLLYGWS Q+N KEARRI+KEMKS G
Sbjct: 184 IITALCGKGHARRAEGVVWHHKDKISGVEQCIYRSLLYGWSEQENAKEARRIIKEMKSAG 243

Query: 258 TMPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRA 317
            MPDLF YNTFLRCLCE+NLK+NPS LVP    XXXXXXXXXXXXXXXXXXXXXXXX RA
Sbjct: 244 FMPDLFCYNTFLRCLCERNLKRNPSALVPETLNXXXXXXXXXXXXXXXXXXXXXXXXVRA 303

Query: 318 RRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 377
           RR                                                          
Sbjct: 304 RRVKECCRILETMRKSGCSPDWTSYYLVARVSYLTGRYGKGNKIVDEMIAEGLVPDRMFY 363

Query: 378 XXXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMA 437
                 LCG E   +ALELFE+MKR SLGGYGPVYDVLIPKLCRGGDFE G++LW EAM 
Sbjct: 364 YDLIGILCGAERVNHALELFERMKRCSLGGYGPVYDVLIPKLCRGGDFEKGKKLWNEAMG 423

Query: 438 MGLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAEK 471
           MG+TL  SSDVLDPSITKVFKPTR ++  +L E   A+K
Sbjct: 424 MGVTLHFSSDVLDPSITKVFKPTRSLEKVSLVECTAAKK 462

[Close]

BLAST of Carg17950 vs. TrEMBL
Match: tr|A0A2N9G3K2|A0A2N9G3K2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21841 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.2e-125
Identity = 243/443 (54.85%), Postives = 285/443 (64.33%), Query Frame = 0


Query: 22  KWDCLFVQSVCTQ---HRFCSLHSTVKNG---ASVSKLCEVVSCTIGGLDELEATLNKST 81
           +W    +Q++ TQ   H   SL+ T+       ++ +LC VVS T+GGLDELE  LNK T
Sbjct: 9   RWQSFLLQNIKTQKCRHVCLSLYCTMLPNPVLPALQELCSVVSSTVGGLDELELRLNKFT 68

Query: 82  VSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKDYTAI 141
            SL+SS+VTQ+IDSCK+EAP RR+LRFF WS K L   LED+D+NYAIR+FA+K D+TAI
Sbjct: 69  GSLSSSIVTQIIDSCKHEAPTRRMLRFFLWSHKNLKCGLEDKDYNYAIRVFAEKNDHTAI 128

Query: 142 DILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKYKCPHDQFTVTAIITA 201
           DIL SDL+K  R MD  TF +VA+ LVK+ REDEALG+FKNLDKYKCP D  TVTAI+++
Sbjct: 129 DILTSDLRKEGRVMDTHTFSVVADILVKLGREDEALGIFKNLDKYKCPQDGVTVTAIVSS 188

Query: 202 LCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEARRILKEMKSDGTMPD 261
           LCAKGHA+RAEGVV HHKDKISG   CIYRSLLYGWS Q+N KEARRI+KEMK  G M D
Sbjct: 189 LCAKGHARRAEGVVWHHKDKISGIEPCIYRSLLYGWSEQENVKEARRIIKEMKLAGFMLD 248

Query: 262 LFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRARRXX 321
           LF YNTFLRCLCE+NLK+NPSGLVP                            GR RR  
Sbjct: 249 LFCYNTFLRCLCERNLKRNPSGLVPEALNVMMEMRSYKIAPTSISYNILLSCLGRTRRVK 308

Query: 322 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 381
                                                                       
Sbjct: 309 ESCGILETMKKSGCPPDWTTYYLVARVLYLTGRHGKGNQIVDEMIGEGLIPDRKFYYDLI 368

Query: 382 XXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLT 441
             LCGVE   +ALELFE+MKRSSLGGYGPVYDVLIPK+CRGGDFE GR+LW EAM +G+T
Sbjct: 369 GILCGVERVNHALELFERMKRSSLGGYGPVYDVLIPKICRGGDFEKGRELWNEAMGLGIT 428

Query: 442 LRCSSDVLDPSITKVFKPTRKID 459
           L CSSDVLD SIT+VFKPTRK++
Sbjct: 429 LCCSSDVLDTSITEVFKPTRKLE 451

[Close]

BLAST of Carg17950 vs. TrEMBL
Match: tr|A0A2P5D6L5|A0A2P5D6L5_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092520 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 4.4e-125
Identity = 252/457 (55.14%), Postives = 291/457 (63.68%), Query Frame = 0


Query: 20  KLKWDCLFVQSVCTQH--RF-CSLHSTVKNGASVS----KLCEVVSCTIGGLDELEATLN 79
           K KW    +++   Q+  RF C   ST    AS S    +L  VVS T+GGL++LE++LN
Sbjct: 6   KSKWQLFLLRNFTAQNSLRFLCFQGSTTALTASASPELRELSAVVSRTVGGLEDLESSLN 65

Query: 80  KSTVSLTSSLVTQVIDSCKNEAPNRRLLRFFSWSLKKLNHDLEDEDFNYAIRLFAQKKDY 139
               SLTSSLVTQVIDSCK EAP RRLLRFF WS K L  +LED+D+N+AIR+FA KKD+
Sbjct: 66  DFKASLTSSLVTQVIDSCKTEAPTRRLLRFFLWSHKNLKCNLEDKDYNHAIRVFAGKKDH 125

Query: 140 TAIDILLSDLKKARRAMDGQTFGLVAEALVKMDREDEALGLFKNLDKYKCPHDQFTVTAI 199
           TA+ IL+SDLKK  R ++ QT+  VAE LVK+ REDEALG+FKNL+KYKCP D FTVTAI
Sbjct: 126 TALGILISDLKKEGRELESQTYATVAETLVKLGREDEALGIFKNLEKYKCPQDSFTVTAI 185

Query: 200 ITALCAKGHAKRAEGVVLHHKDKISGTMSCIYRSLLYGWSIQKNTKEARRILKEMKSDGT 259
           + ALCA+GHAKRAEGVV HHKDKI G    IYRSLLYGWS Q+N KEARRI+KEMKS G 
Sbjct: 186 VNALCARGHAKRAEGVVWHHKDKICGVEQSIYRSLLYGWSEQENVKEARRIIKEMKSAGI 245

Query: 260 MPDLFSYNTFLRCLCEQNLKKNPSGLVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRAR 319
           MP LF YNTFLRCLCE+NLK+NPSGLVP                            GRAR
Sbjct: 246 MPYLFCYNTFLRCLCERNLKRNPSGLVPEALNVMMEMRSHKVVATSVSYNILLSCLGRAR 305

Query: 320 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 379
           R                                                           
Sbjct: 306 RVKESCQILERMKKTGCSPDWMSYYLVIRVLYLTMRFGTGNKLVDEMIGKGLMPMCKFYY 365

Query: 380 XXXXXLCGVESEKYALELFEKMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAM 439
                LC VE   YALELFE+MKRSSLGGYGPVYDVLIPKLCRGGDFEMGR+LW+EAM M
Sbjct: 366 DLIGVLCAVERPYYALELFERMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRELWDEAMNM 425

Query: 440 GLTLRCSSDVLDPSITKVFKPTRKIDNQNLEESNRAE 470
           G+ L CSSDVLDPSIT+VFKPTRK +  +L ES+ A+
Sbjct: 426 GVDLCCSSDVLDPSITEVFKPTRKEEKISLVESSSAK 462

The following BLAST results are available for this feature:

BLAST of Carg17950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921576.1	9.4e-204	98.94	pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ...	[more]
XP_022987424.1	2.0e-198	97.03	pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ...	[more]
XP_023516447.1	2.2e-197	96.61	pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ...	[more]
XP_022134610.1	2.4e-167	81.99	pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Momordica ...	[more]
XP_008453221.1	5.2e-162	83.69	PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial ...	[more]

BLAST of Carg17950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G61370.1	1.0e-98	65.87	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G60960.1	6.9e-15	23.33	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G80550.1	3.1e-07	23.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G77405.1	6.4e-05	21.35	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G80880.1	1.1e-04	26.04	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg17950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FLJ6\|PP439_ARATH	1.8e-97	65.87	Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidop...	[more]
sp\|Q9FME4\|PP438_ARATH	1.2e-13	23.33	Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis t...	[more]
sp\|Q9M8M3\|PP136_ARATH	5.6e-06	23.03	Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop...	[more]

BLAST of Carg17950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BV55\|A0A1S3BV55_CUCME	3.5e-162	83.69	pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucumis ...	[more]
tr\|A0A0A0LPF4\|A0A0A0LPF4_CUCSA	6.5e-153	81.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1	[more]
tr\|A0A2I4GB17\|A0A2I4GB17_9ROSI	3.3e-128	59.69	pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Juglans ...	[more]
tr\|A0A2N9G3K2\|A0A2N9G3K2_FAGSY	1.2e-125	54.85	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21841 PE=4 SV=1	[more]
tr\|A0A2P5D6L5\|A0A2P5D6L5_PARAD	4.4e-125	55.14	Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092520 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17950-RA	Carg17950-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 335..367 e-value: 0.0011 score: 17.0 coord: 299..333 e-value: 1.1E-8 score: 32.7 coord: 223..255 e-value: 9.8E-4 score: 17.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 223..267 e-value: 3.6E-7 score: 30.1 coord: 296..336 e-value: 2.7E-8 score: 33.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 332..366 score: 8.802
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 297..331 score: 12.123
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 367..401 score: 6.555
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 220..254 score: 8.495
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 150..184 score: 7.103
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 255..296 score: 7.092
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 402..436 score: 7.903
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 185..215 score: 6.029
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 62..217 e-value: 3.4E-12 score: 48.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 220..465 e-value: 2.1E-35 score: 124.6
None	No IPR available	PANTHER	PTHR24015:SF620	SUBFAMILY NOT NAMED	coord: 72..443
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 72..443

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17950	Cla019096	Watermelon (97103) v1	carwmB0460
Carg17950	Csa1G009920	Cucumber (Chinese Long) v2	carcuB0493
Carg17950	MELO3C017189	Melon (DHL92) v3.5.1	carmeB0468
Carg17950	ClCG06G016020	Watermelon (Charleston Gray)	carwcgB0450
Carg17950	CSPI01G02490	Wild cucumber (PI 183967)	carcpiB0499
Carg17950	Cucsa.197870	Cucumber (Gy14) v1	carcgyB0533
Carg17950	CmaCh10G002050	Cucurbita maxima (Rimu)	carcmaB0640
Carg17950	CmoCh10G002220	Cucurbita moschata (Rifu)	carcmoB0622
Carg17950	CmoCh11G001830	Cucurbita moschata (Rifu)	carcmoB0624
Carg17950	Lsi06G014500	Bottle gourd (USVL1VR-Ls)	carlsiB419
Carg17950	Cp4.1LG18g08000	Cucurbita pepo (Zucchini)	carcpeB0646
Carg17950	MELO3C017189.2	Melon (DHL92) v3.6.1	carmedB0471
Carg17950	CsaV3_1G002530	Cucumber (Chinese Long) v3	carcucB0496
Carg17950	Cla97C06G125590	Watermelon (97103) v2	carwmbB0486
Carg17950	Bhi02G000206	Wax gourd	carwgoB0562

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17950	Carg18204	Silver-seed gourd	carcarB460

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17950	Wax gourd	carwgoB0559
Carg17950	Cucumber (Gy14) v2	carcgybB0472
Carg17950	Silver-seed gourd	carcarB060
Carg17950	Cucumber (Gy14) v2	carcgybB0470
Carg17950	Cucumber (Gy14) v1	carcgyB0531
Carg17950	Cucurbita maxima (Rimu)	carcmaB0642
Carg17950	Cucurbita maxima (Rimu)	carcmaB0646
Carg17950	Cucurbita moschata (Rifu)	carcmoB0628
Carg17950	Cucurbita pepo (Zucchini)	carcpeB0648
Carg17950	Cucurbita pepo (Zucchini)	carcpeB0649
Carg17950	Wild cucumber (PI 183967)	carcpiB0501
Carg17950	Cucumber (Chinese Long) v2	carcuB0495
Carg17950	Cucumber (Chinese Long) v3	carcucB0498
Carg17950	Bottle gourd (USVL1VR-Ls)	carlsiB418
Carg17950	Melon (DHL92) v3.5.1	carmeB0466
Carg17950	Melon (DHL92) v3.6.1	carmedB0469
Carg17950	Watermelon (Charleston Gray)	carwcgB0448
Carg17950	Watermelon (97103) v1	carwmB0458
Carg17950	Watermelon (97103) v2	carwmbB0483