Carg18204 (gene) Silver-seed gourd

Overview
NameCarg18204
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein, mitochondrial
LocationCucurbita_argyrosperma_scaffold_136 : 386611 .. 387948 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCTGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTCCCTTAGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCTCAATCAGTTGTAATGTATTGTTGTCATGTCTGGGTAGGATCAGGAGAGTGAAGGAATAATGTAGAACCCTTGACATGATGAAACGATCTGGTTTTCGACCCGATTGGGTTGGCTATTATCTTGTGGTGAGAGTTCTGTTCCTGAGTGGAAGGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGTAAGAATCTATCTTTGAAATAACTTTTTGAGTTTTTGCTATCAAACCAAATCATGTGAAGTTATTTTCTTCTCGATTAATATTGTTGGGCTTTCAACGGATTATCCTAATTCTAATTTTGTAGAACAAAAAAAGAAAAAACCTAAAAATTCTGAGTGGTGACAGAAGGAGCTAGGAACTTGGAATTTGTGTAATAGAAAAAACATCCCAATAATCAGGAAACAGTGGATCCAATCACGGATCAGACGGATGCATGTGCCGTTTGAGATTTACATAAAATCCATCGGACATGAATTATAATCTTTGTTTAATGACATTAAACTTCTAATCATTCACAGAAAGTCCTTCAATTCAACGCCCCGTCGGTGTTCATTGTTCAGACAAATCTCTCCATTGTCTCTTCTTCTTCTTCCTTTCTTGGCTGTTCCTTATCTATCACCACCATGAATTGAATTGAATTGAATTGAATTGAATTGAACTGAATTGAATCGAATTCATCGCCATTACCCATTACTGTTCTCTTCTTCTTCTTCTTCTTCTTCTACCTCTTCCCTCCATGATTGTCCCATTTTCTGTCCCACCTCTTTGATTTCTGATCTTGCTGACATAATTGAATTGCAGGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

mRNA sequence

ATGAAGTCTGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTCCCTTAGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCTCAATCAGTTGTAATGTATTGTTGTCATGTCTGGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

Coding sequence (CDS)

ATGAAGTCTGATGGAACCATGCCAGATTTGTTCTGCTACAACACTTCCCTTAGGTGCCTTTGCAAGCATAATCTTAAGAAAAATCCTTCAGGTCTTGTGCCTGAAGCATTGAATGTGATGATGGAAATGAGATCCTATATGATTGCCCCAAACTCTCAATCAGTTGTAATGTATTGTTGTCATGTCTGGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

Protein sequence

MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSVVMYCCHVWGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG
Homology
[Close]
BLAST of Carg18204 vs. NCBI nr
Match: XP_024437984.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Populus trichocarpa] >PNT09863.1 hypothetical protein POPTR_012G068400v3 [Populus trichocarpa])

HSP 1 Score: 206.5 bits (524), Expect = 8.5e-50
Identity = 106/193 (54.92%), Postives = 121/193 (62.69%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSV----- 60
           MK DG +PDLFCYNT L+CLC+ NLK+NPSGLVPEALNVMMEMRSY I PNS S      
Sbjct: 240 MKGDGLIPDLFCYNTFLKCLCERNLKRNPSGLVPEALNVMMEMRSYRIEPNSISYNTLLS 299

Query: 61  -----------------------------------VMYCCHVWGTG------LWTTWLIP 120
                                              VMY    +G G      +    L+P
Sbjct: 300 SLGRARRVKESYRMLETMKTTGCAPDWVSYFLVAKVMYLTGRFGKGNEIVDEMIGQGLLP 359

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 148
           DRKFY++LIG+LCG ER SYALELFE+MK SSLGGY PVYD+LIPKLC+GGDFE GR+LW
Sbjct: 360 DRKFYYNLIGVLCGVERVSYALELFERMKTSSLGGYGPVYDILIPKLCKGGDFERGRELW 419

[Close]
BLAST of Carg18204 vs. NCBI nr
Match: PON68935.1 (Pentatricopeptide repeat [Parasponia andersonii])

HSP 1 Score: 192.6 bits (488), Expect = 1.3e-45
Identity = 109/216 (50.46%), Postives = 127/216 (58.80%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSV----- 60
           MKS G MP LFCYNT LRCLC+ NLK+NPSGLVPEALNVMMEMRS+ +   S S      
Sbjct: 240 MKSAGIMPYLFCYNTFLRCLCERNLKRNPSGLVPEALNVMMEMRSHKVVATSVSYNILLS 299

Query: 61  -----------------------------------VMYCCHVWGTG------LWTTWLIP 120
                                              V+Y    +GTG      +    L+P
Sbjct: 300 CLGRARRVKESCQILERMKKTGCSPDWMSYYLVIRVLYLTMRFGTGNKLVDEMIGKGLMP 359

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 171
             KFY+DLIG+LC  ER  YALELFE+MKRSSLGGY PVYDVLIPKLCRGGDFEMGR+LW
Sbjct: 360 MCKFYYDLIGVLCAVERPYYALELFERMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRELW 419

[Close]
BLAST of Carg18204 vs. NCBI nr
Match: XP_023746737.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Lactuca sativa] >PLY64013.1 hypothetical protein LSAT_4X109161 [Lactuca sativa])

HSP 1 Score: 186.8 bits (473), Expect = 7.0e-44
Identity = 104/238 (43.70%), Postives = 132/238 (55.46%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSV----- 60
           MK  G  PDLFCYNT L+CLCK NLK NPSGLVPEALNVM+EMRSY IAP + S      
Sbjct: 234 MKGAGITPDLFCYNTFLKCLCKKNLKSNPSGLVPEALNVMIEMRSYKIAPTTVSYNILLS 293

Query: 61  -----------------------------------------VMYCCHVWGTG------LW 120
                                                    V+Y    +G G      + 
Sbjct: 294 CLGRTRRVKESLQILNTMKKTVCSXXXXXAPDWVTYYLVARVLYLSGRFGKGKQMVDEMI 353

Query: 121 TTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFE 180
              LIP+RKFY+DLIG+LCG ER +YALELF+ MK+SSLGGY  VYD+LIPKLC+ G+FE
Sbjct: 354 EEGLIPERKFYYDLIGVLCGVERVNYALELFDLMKKSSLGGYEKVYDLLIPKLCKNGEFE 413

Query: 181 MGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRR 187
            G++LW+EAM+M LKL CS   S      I K  +   + E++ +      + +G ++
Sbjct: 414 KGKELWDEAMSMNLKLECS---SDVLNPLITKVFKPMRKVEEEVKIVESDKVKIGGKK 468

[Close]
BLAST of Carg18204 vs. NCBI nr
Match: XP_018841081.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Juglans regia])

HSP 1 Score: 175.3 bits (443), Expect = 2.1e-40
Identity = 102/216 (47.22%), Postives = 120/216 (55.56%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALN---------------------- 60
           MKS G MPDLFCYNT LRCLC+ NLK+NPS LVPE LN                      
Sbjct: 239 MKSAGFMPDLFCYNTFLRCLCERNLKRNPSALVPETLNXXXXXXXXXXXXXXXXXXXXXX 298

Query: 61  -------------VMMEMRSYMIAPNSQSV-----VMYCCHVWGTG------LWTTWLIP 120
                        ++  MR    +P+  S      V Y    +G G      +    L+P
Sbjct: 299 XXVRARRVKECCRILETMRKSGCSPDWTSYYLVARVSYLTGRYGKGNKIVDEMIAEGLVP 358

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 171
           DR FY+DLIGILCGAER ++ALELFE+MKR SLGGY PVYDVLIPKLCRGGDFE G++LW
Sbjct: 359 DRMFYYDLIGILCGAERVNHALELFERMKRCSLGGYGPVYDVLIPKLCRGGDFEKGKKLW 418

[Close]
BLAST of Carg18204 vs. NCBI nr
Match: XP_011008742.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Populus euphratica])

HSP 1 Score: 173.7 bits (439), Expect = 6.1e-40
Identity = 92/193 (47.67%), Postives = 115/193 (59.59%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGL---------------------------- 60
           MK DG +PDLFC+NT L+CLC+ NLK+NPSGL                            
Sbjct: 240 MKGDGLIPDLFCFNTFLKCLCERNLKRNPSGLVXXXXXXXXXXXXXXXXXXXXXXXXXXX 299

Query: 61  -------VPEALNVMMEMRSYMIAPNSQSV-----VMYCCHVWGTG------LWTTWLIP 120
                  V E+  ++  M++   AP+  S      VMY    +G G      +    L+P
Sbjct: 300 XXGRARRVKESYRMLETMKTTGCAPDWVSYFLVAKVMYLTGRFGKGNEIVDEMIEQGLLP 359

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 148
           DRKFY++LIG+LCG ER SYALELFE+MK SSLGGY PVYD+LIPKLC+GGDFE GR+LW
Sbjct: 360 DRKFYYNLIGVLCGVERVSYALELFERMKTSSLGGYGPVYDILIPKLCKGGDFERGRELW 419

[Close]
BLAST of Carg18204 vs. TAIR10
Match: AT5G61370.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 107 LGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTT 166
           +GGY  VYD+LIPKLC+GG+FE GR+LWEEA+++ + L CS+         + K ++   
Sbjct: 386 VGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDVTLSCSISLLDPSVTEVFKPMKMKE 445

Query: 167 EAEKQNEAATDKTI 181
           EA   +  A +  I
Sbjct: 446 EAAMVDRRALNLKI 459

[Close]
BLAST of Carg18204 vs. TAIR10
Match: AT5G60960.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 31/115 (26.96%), Postives = 54/115 (46.96%), Query Frame = 0 

Query: 75  DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 134
           ++K Y+  + ILCG ER  +A+ +F+ MK +        YD+L+ K+C          L+
Sbjct: 393 NKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLY 452

Query: 135 EEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEV 190
           +EA   G+ +  S +      RF+ K  +      K+ E   +KT    KR  ++
Sbjct: 453 KEAAKKGIAV--SPKEYRVDPRFMKKKTKEVDSNVKKRETLPEKTARKKKRLKQI 505

[Close]
BLAST of Carg18204 vs. Swiss-Prot
Match: sp|Q9FLJ6|PP439_ARATH (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61370 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 107 LGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTT 166
           +GGY  VYD+LIPKLC+GG+FE GR+LWEEA+++ + L CS+         + K ++   
Sbjct: 386 VGGYGQVYDLLIPKLCKGGNFEKGRELWEEALSIDVTLSCSISLLDPSVTEVFKPMKMKE 445

Query: 167 EAEKQNEAATDKTI 181
           EA   +  A +  I
Sbjct: 446 EAAMVDRRALNLKI 459

[Close]
BLAST of Carg18204 vs. Swiss-Prot
Match: sp|Q9FME4|PP438_ARATH (Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PNM1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 31/115 (26.96%), Postives = 54/115 (46.96%), Query Frame = 0 

Query: 75  DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 134
           ++K Y+  + ILCG ER  +A+ +F+ MK +        YD+L+ K+C          L+
Sbjct: 393 NKKEYYGFLKILCGIERLEHAMSVFKSMKANGCKPGIKTYDLLMGKMCANNQLTRANGLY 452

Query: 135 EEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEV 190
           +EA   G+ +  S +      RF+ K  +      K+ E   +KT    KR  ++
Sbjct: 453 KEAAKKGIAV--SPKEYRVDPRFMKKKTKEVDSNVKKRETLPEKTARKKKRLKQI 505

[Close]
BLAST of Carg18204 vs. TrEMBL
Match: tr|A0A2K1YA12|A0A2K1YA12_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G068400v3 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.6e-50
Identity = 106/193 (54.92%), Postives = 121/193 (62.69%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSV----- 60
           MK DG +PDLFCYNT L+CLC+ NLK+NPSGLVPEALNVMMEMRSY I PNS S      
Sbjct: 240 MKGDGLIPDLFCYNTFLKCLCERNLKRNPSGLVPEALNVMMEMRSYRIEPNSISYNTLLS 299

Query: 61  -----------------------------------VMYCCHVWGTG------LWTTWLIP 120
                                              VMY    +G G      +    L+P
Sbjct: 300 SLGRARRVKESYRMLETMKTTGCAPDWVSYFLVAKVMYLTGRFGKGNEIVDEMIGQGLLP 359

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 148
           DRKFY++LIG+LCG ER SYALELFE+MK SSLGGY PVYD+LIPKLC+GGDFE GR+LW
Sbjct: 360 DRKFYYNLIGVLCGVERVSYALELFERMKTSSLGGYGPVYDILIPKLCKGGDFERGRELW 419

[Close]
BLAST of Carg18204 vs. TrEMBL
Match: tr|A0A2N9G3K2|A0A2N9G3K2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21841 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.6e-49
Identity = 114/216 (52.78%), Postives = 133/216 (61.57%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQS--VVMY 60
           MK  G M DLFCYNT LRCLC+ NLK+NPSGLVPEALNVMMEMRSY IAP S S  +++ 
Sbjct: 240 MKLAGFMLDLFCYNTFLRCLCERNLKRNPSGLVPEALNVMMEMRSYKIAPTSISYNILLS 299

Query: 61  C----------CHVWGTGL-------WTTW---------------------------LIP 120
           C          C +  T         WTT+                           LIP
Sbjct: 300 CLGRTRRVKESCGILETMKKSGCPPDWTTYYLVARVLYLTGRHGKGNQIVDEMIGEGLIP 359

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 171
           DRKFY+DLIGILCG ER ++ALELFE+MKRSSLGGY PVYDVLIPK+CRGGDFE GR+LW
Sbjct: 360 DRKFYYDLIGILCGVERVNHALELFERMKRSSLGGYGPVYDVLIPKICRGGDFEKGRELW 419

[Close]
BLAST of Carg18204 vs. TrEMBL
Match: tr|A0A2P5D6L5|A0A2P5D6L5_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092520 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.4e-46
Identity = 109/216 (50.46%), Postives = 127/216 (58.80%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSV----- 60
           MKS G MP LFCYNT LRCLC+ NLK+NPSGLVPEALNVMMEMRS+ +   S S      
Sbjct: 240 MKSAGIMPYLFCYNTFLRCLCERNLKRNPSGLVPEALNVMMEMRSHKVVATSVSYNILLS 299

Query: 61  -----------------------------------VMYCCHVWGTG------LWTTWLIP 120
                                              V+Y    +GTG      +    L+P
Sbjct: 300 CLGRARRVKESCQILERMKKTGCSPDWMSYYLVIRVLYLTMRFGTGNKLVDEMIGKGLMP 359

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 171
             KFY+DLIG+LC  ER  YALELFE+MKRSSLGGY PVYDVLIPKLCRGGDFEMGR+LW
Sbjct: 360 MCKFYYDLIGVLCAVERPYYALELFERMKRSSLGGYGPVYDVLIPKLCRGGDFEMGRELW 419

[Close]
BLAST of Carg18204 vs. TrEMBL
Match: tr|A0A2J6JMG6|A0A2J6JMG6_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X109161 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.6e-44
Identity = 104/238 (43.70%), Postives = 132/238 (55.46%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALNVMMEMRSYMIAPNSQSV----- 60
           MK  G  PDLFCYNT L+CLCK NLK NPSGLVPEALNVM+EMRSY IAP + S      
Sbjct: 234 MKGAGITPDLFCYNTFLKCLCKKNLKSNPSGLVPEALNVMIEMRSYKIAPTTVSYNILLS 293

Query: 61  -----------------------------------------VMYCCHVWGTG------LW 120
                                                    V+Y    +G G      + 
Sbjct: 294 CLGRTRRVKESLQILNTMKKTVCSXXXXXAPDWVTYYLVARVLYLSGRFGKGKQMVDEMI 353

Query: 121 TTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFE 180
              LIP+RKFY+DLIG+LCG ER +YALELF+ MK+SSLGGY  VYD+LIPKLC+ G+FE
Sbjct: 354 EEGLIPERKFYYDLIGVLCGVERVNYALELFDLMKKSSLGGYEKVYDLLIPKLCKNGEFE 413

Query: 181 MGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRR 187
            G++LW+EAM+M LKL CS   S      I K  +   + E++ +      + +G ++
Sbjct: 414 KGKELWDEAMSMNLKLECS---SDVLNPLITKVFKPMRKVEEEVKIVESDKVKIGGKK 468

[Close]
BLAST of Carg18204 vs. TrEMBL
Match: tr|A0A2I4GB17|A0A2I4GB17_9ROSI (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Juglans regia OX=51240 GN=LOC109006306 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 102/216 (47.22%), Postives = 120/216 (55.56%), Query Frame = 0 

Query: 1   MKSDGTMPDLFCYNTSLRCLCKHNLKKNPSGLVPEALN---------------------- 60
           MKS G MPDLFCYNT LRCLC+ NLK+NPS LVPE LN                      
Sbjct: 239 MKSAGFMPDLFCYNTFLRCLCERNLKRNPSALVPETLNXXXXXXXXXXXXXXXXXXXXXX 298

Query: 61  -------------VMMEMRSYMIAPNSQSV-----VMYCCHVWGTG------LWTTWLIP 120
                        ++  MR    +P+  S      V Y    +G G      +    L+P
Sbjct: 299 XXVRARRVKECCRILETMRKSGCSPDWTSYYLVARVSYLTGRYGKGNKIVDEMIAEGLVP 358

Query: 121 DRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLW 171
           DR FY+DLIGILCGAER ++ALELFE+MKR SLGGY PVYDVLIPKLCRGGDFE G++LW
Sbjct: 359 DRMFYYDLIGILCGAERVNHALELFERMKRCSLGGYGPVYDVLIPKLCRGGDFEKGKKLW 418

The following BLAST results are available for this feature:
BLAST of Carg18204 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024437984.18.5e-5054.92pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Populus tr... [more]
PON68935.11.3e-4550.46Pentatricopeptide repeat [Parasponia andersonii][more]
XP_023746737.17.0e-4443.70pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Lactuca sa... [more]
XP_018841081.12.1e-4047.22PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial ... [more]
XP_011008742.16.1e-4047.67PREDICTED: pentatricopeptide repeat-containing protein At5g61370, mitochondrial ... [more]
BLAST of Carg18204 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61370.11.9e-1141.89Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G60960.11.3e-0726.96Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg18204 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FLJ6|PP439_ARATH3.4e-1041.89Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidop... [more]
sp|Q9FME4|PP438_ARATH2.3e-0626.96Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis t... [more]
BLAST of Carg18204 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K1YA12|A0A2K1YA12_POPTR5.6e-5054.92Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G068400v3 PE=... [more]
tr|A0A2N9G3K2|A0A2N9G3K2_FAGSY3.6e-4952.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21841 PE=4 SV=1[more]
tr|A0A2P5D6L5|A0A2P5D6L5_PARAD8.4e-4650.46Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_092520 P... [more]
tr|A0A2J6JMG6|A0A2J6JMG6_LACSA4.6e-4443.70Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X109161 PE=4 SV=1[more]
tr|A0A2I4GB17|A0A2I4GB17_9ROSI1.4e-4047.22pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Juglans ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18204-RACarg18204-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 158..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..195
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 72..157
NoneNo IPR availablePANTHERPTHR24015:SF620SUBFAMILY NOT NAMEDcoord: 72..157
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 3..56
NoneNo IPR availablePANTHERPTHR24015:SF620SUBFAMILY NOT NAMEDcoord: 3..56
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 113..144
e-value: 8.1E-4
score: 17.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 82..105
e-value: 0.1
score: 12.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..66
e-value: 2.3E-5
score: 25.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 68..141
e-value: 6.3E-8
score: 34.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18204Cla019096Watermelon (97103) v1carwmB0613
Carg18204Csa1G009920Cucumber (Chinese Long) v2carcuB0638
Carg18204MELO3C017189Melon (DHL92) v3.5.1carmeB0616
Carg18204ClCG06G016020Watermelon (Charleston Gray)carwcgB0598
Carg18204CSPI01G02490Wild cucumber (PI 183967)carcpiB0645
Carg18204Cucsa.197870Cucumber (Gy14) v1carcgyB0689
Carg18204CmaCh11G001300Cucurbita maxima (Rimu)carcmaB0861
Carg18204CmaCh10G002050Cucurbita maxima (Rimu)carcmaB0859
Carg18204CmoCh11G001830Cucurbita moschata (Rifu)carcmoB0838
Carg18204Cp4.1LG18g08000Cucurbita pepo (Zucchini)carcpeB0871
Carg18204MELO3C017189.2Melon (DHL92) v3.6.1carmedB0623
Carg18204CsaV3_1G002530Cucumber (Chinese Long) v3carcucB0646
Carg18204Cla97C06G125590Watermelon (97103) v2carwmbB0640
Carg18204Bhi02G000206Wax gourdcarwgoB0732
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18204Carg17950Silver-seed gourdcarcarB460
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18204Silver-seed gourdcarcarB061
Carg18204Cucumber (Gy14) v2carcgybB0611
Carg18204Cucumber (Gy14) v2carcgybB0612
Carg18204Cucumber (Gy14) v1carcgyB0688
Carg18204Cucurbita maxima (Rimu)carcmaB0865
Carg18204Cucurbita moschata (Rifu)carcmoB0837
Carg18204Cucurbita moschata (Rifu)carcmoB0842
Carg18204Cucurbita pepo (Zucchini)carcpeB0873
Carg18204Cucurbita pepo (Zucchini)carcpeB0874
Carg18204Wild cucumber (PI 183967)carcpiB0646
Carg18204Cucumber (Chinese Long) v2carcuB0639
Carg18204Cucumber (Chinese Long) v3carcucB0647
Carg18204Bottle gourd (USVL1VR-Ls)carlsiB558
Carg18204Bottle gourd (USVL1VR-Ls)carlsiB560
Carg18204Melon (DHL92) v3.5.1carmeB0615
Carg18204Melon (DHL92) v3.6.1carmedB0622
Carg18204Watermelon (Charleston Gray)carwcgB0597
Carg18204Watermelon (97103) v1carwmB0612
Carg18204Watermelon (97103) v2carwmbB0638
Carg18204Watermelon (97103) v2carwmbB0639
Carg18204Wax gourdcarwgoB0728
Carg18204Wax gourdcarwgoB0730