Csa1G009880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G009880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1534335 .. 1534897 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTTCGGTATTACATTCAAGTTGGCCGTTATATTACGAGGAGGGAAAATTGAACTTCACATCTCAAATGTTATTATTTTTTTTTTTTGGATAACTGCAAATATTGTAATTAGATTCAGAACATTAACATATAAAATAACATTTTAAAAAAAATTACAAATATAACAAAATTTATTAAAGTCTATTATTATGAATAGACCATGTTATAAATATTGTCACGAAAAGATCATAAAAGTCTGTCACTCATAAACCATACAATTCTAATAAAAGTTTATGACCCTTTATTGAGAAAACTTTACTATATACATTTACAATTTAAAAAAAATGTTTGCTACCCATTGCCATTAGTTCTTTTTTGATTGGGCCGTCCTCAGCCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGTGAAAGCTTATTCGTTATCGCCTCCTTAG

mRNA sequence

ATGAAGATTTTCGGTATTACATTCAAGTTGGCCGTTATATTACGAGGAGGGAAAATTGAACTTCACATCTCAAATCCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGTGAAAGCTTATTCGTTATCGCCTCCTTAG

Coding sequence (CDS)

ATGAAGATTTTCGGTATTACATTCAAGTTGGCCGTTATATTACGAGGAGGGAAAATTGAACTTCACATCTCAAATCCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGTGAAAGCTTATTCGTTATCGCCTCCTTAG

Protein sequence

MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSALPIAVTASVLLFRRHNPVKAYSLSPP*
Homology
[Close]
BLAST of Csa1G009880 vs. TrEMBL
Match: A0A0A0LRQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009880 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL 60
          MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL
Sbjct: 1  MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL 60

Query: 61 PIAVTASVLLFRRHNPVKAYSLSPP 86
          PIAVTASVLLFRRHNPVKAYSLSPP
Sbjct: 61 PIAVTASVLLFRRHNPVKAYSLSPP 85

[Close]
BLAST of Csa1G009880 vs. NCBI nr
Match: gi|700208588|gb|KGN63684.1| (hypothetical protein Csa_1G009880 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL 60
          MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL
Sbjct: 1  MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL 60

Query: 61 PIAVTASVLLFRRHNPVKAYSLSPP 86
          PIAVTASVLLFRRHNPVKAYSLSPP
Sbjct: 61 PIAVTASVLLFRRHNPVKAYSLSPP 85

The following BLAST results are available for this feature:
BLAST of Csa1G009880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRQ3_CUCSA1.3e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009880 PE=4 SV=1[more]
BLAST of Csa1G009880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208588|gb|KGN63684.1|1.8e-40100.00hypothetical protein Csa_1G009880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G009880.1Csa1G009880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G009880CSPI01G02440Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G009880Cucumber (Gy14) v1cgycuB138
Csa1G009880Cucumber (Gy14) v1cgycuB299
Csa1G009880Cucumber (Gy14) v1cgycuB404
Csa1G009880Cucurbita maxima (Rimu)cmacuB048
Csa1G009880Cucurbita maxima (Rimu)cmacuB097
Csa1G009880Cucurbita maxima (Rimu)cmacuB429
Csa1G009880Cucurbita maxima (Rimu)cmacuB685
Csa1G009880Cucurbita moschata (Rifu)cmocuB076
Csa1G009880Cucurbita moschata (Rifu)cmocuB037
Csa1G009880Cucurbita moschata (Rifu)cmocuB418
Csa1G009880Cucurbita moschata (Rifu)cmocuB673
Csa1G009880Melon (DHL92) v3.5.1cumeB009
Csa1G009880Melon (DHL92) v3.5.1cumeB030
Csa1G009880Melon (DHL92) v3.5.1cumeB054
Csa1G009880Watermelon (Charleston Gray)cuwcgB058
Csa1G009880Watermelon (Charleston Gray)cuwcgB062
Csa1G009880Watermelon (Charleston Gray)cuwcgB081
Csa1G009880Watermelon (97103) v1cuwmB037
Csa1G009880Watermelon (97103) v1cuwmB063
Csa1G009880Cucurbita pepo (Zucchini)cpecuB361
Csa1G009880Cucurbita pepo (Zucchini)cpecuB536
Csa1G009880Cucurbita pepo (Zucchini)cpecuB653
Csa1G009880Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G009880Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G009880Bottle gourd (USVL1VR-Ls)culsiB056
Csa1G009880Cucumber (Gy14) v2cgybcuB001
Csa1G009880Cucumber (Gy14) v2cgybcuB005
Csa1G009880Melon (DHL92) v3.6.1cumedB004
Csa1G009880Melon (DHL92) v3.6.1cumedB026
Csa1G009880Melon (DHL92) v3.6.1cumedB046
Csa1G009880Silver-seed gourdcarcuB0053
Csa1G009880Silver-seed gourdcarcuB0493
Csa1G009880Silver-seed gourdcarcuB0638
Csa1G009880Watermelon (97103) v2cuwmbB055
Csa1G009880Watermelon (97103) v2cuwmbB060
Csa1G009880Watermelon (97103) v2cuwmbB078
Csa1G009880Wax gourdcuwgoB054
Csa1G009880Wax gourdcuwgoB070
Csa1G009880Wax gourdcuwgoB095
Csa1G009880Cucumber (Chinese Long) v2cucuB000
Csa1G009880Cucumber (Chinese Long) v2cucuB029
Csa1G009880Watermelon (97103) v1cuwmB094