Csa1G009880.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G009880.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 1534335 .. 1534897 (+)
Sequence length258
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTTCGGTATTACATTCAAGTTGGCCGTTATATTACGAGGAGGGAAAATTGAACTTCACATCTCAAATGTTATTATTTTTTTTTTTTGGATAACTGCAAATATTGTAATTAGATTCAGAACATTAACATATAAAATAACATTTTAAAAAAAATTACAAATATAACAAAATTTATTAAAGTCTATTATTATGAATAGACCATGTTATAAATATTGTCACGAAAAGATCATAAAAGTCTGTCACTCATAAACCATACAATTCTAATAAAAGTTTATGACCCTTTATTGAGAAAACTTTACTATATACATTTACAATTTAAAAAAAATGTTTGCTACCCATTGCCATTAGTTCTTTTTTGATTGGGCCGTCCTCAGCCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGTGAAAGCTTATTCGTTATCGCCTCCTTAG

mRNA sequence

ATGAAGATTTTCGGTATTACATTCAAGTTGGCCGTTATATTACGAGGAGGGAAAATTGAACTTCACATCTCAAATCCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGTGAAAGCTTATTCGTTATCGCCTCCTTAG

Coding sequence (CDS)

ATGAAGATTTTCGGTATTACATTCAAGTTGGCCGTTATATTACGAGGAGGGAAAATTGAACTTCACATCTCAAATCCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGTGAAAGCTTATTCGTTATCGCCTCCTTAG

Protein sequence

MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSALPIAVTASVLLFRRHNPVKAYSLSPP*
Homology
[Close]
BLAST of Csa1G009880.1 vs. TrEMBL
Match: A0A0A0LRQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009880 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL 60
          MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL
Sbjct: 1  MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL 60

Query: 61 PIAVTASVLLFRRHNPVKAYSLSPP 86
          PIAVTASVLLFRRHNPVKAYSLSPP
Sbjct: 61 PIAVTASVLLFRRHNPVKAYSLSPP 85

[Close]
BLAST of Csa1G009880.1 vs. NCBI nr
Match: gi|700208588|gb|KGN63684.1| (hypothetical protein Csa_1G009880 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL 60
          MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL
Sbjct: 1  MKIFGITFKLAVILRGGKIELHISNPNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSAL 60

Query: 61 PIAVTASVLLFRRHNPVKAYSLSPP 86
          PIAVTASVLLFRRHNPVKAYSLSPP
Sbjct: 61 PIAVTASVLLFRRHNPVKAYSLSPP 85

The following BLAST results are available for this feature:
BLAST of Csa1G009880.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRQ3_CUCSA1.3e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009880 PE=4 SV=1[more]
BLAST of Csa1G009880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208588|gb|KGN63684.1|1.8e-40100.00hypothetical protein Csa_1G009880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G009880Csa1G009880gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G009880.1Csa1G009880.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G009880.1.cds1Csa1G009880.1.cds1CDS
Csa1G009880.1.cds2Csa1G009880.1.cds2CDS