CSPI01G02440 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G02440
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 1543796 .. 1543975 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGCGAAAGCTTATTCGTTATCGCCTCCT

mRNA sequence

CCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGCGAAAGCTTATTCGTTATCGCCTCCT

Coding sequence (CDS)

CCCAATCGACTATTGGGATTTCCGAACTACATTTCATTTGCAAATACGCCCAAGAGAGGATCGTCATTTTCACTGCTCCCGCCTTGTACGTACAAAAGCGCGCTTCCGATTGCCGTAACAGCTTCAGTCTTGCTGTTCCGGCGACATAATCCGGCGAAAGCTTATTCGTTATCGCCTCCT

Homology

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BLAST of CSPI01G02440 vs. TrEMBL
Match: A0A0A0LRQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009880 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.1e-26
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1  PNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSALPIAVTASVLLFRRHNPAKAYSLSPP 60
          PNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSALPIAVTASVLLFRRHNP KAYSLSPP
Sbjct: 26 PNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSALPIAVTASVLLFRRHNPVKAYSLSPP 85

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BLAST of CSPI01G02440 vs. NCBI nr
Match: gi|700208588|gb|KGN63684.1| (hypothetical protein Csa_1G009880 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 8.8e-26
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1  PNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSALPIAVTASVLLFRRHNPAKAYSLSPP 60
          PNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSALPIAVTASVLLFRRHNP KAYSLSPP
Sbjct: 26 PNRLLGFPNYISFANTPKRGSSFSLLPPCTYKSALPIAVTASVLLFRRHNPVKAYSLSPP 85

The following BLAST results are available for this feature:

BLAST of CSPI01G02440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G02440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRQ3_CUCSA	6.1e-26	98.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009880 PE=4 SV=1	[more]

BLAST of CSPI01G02440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G02440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208588\|gb\|KGN63684.1\|	8.8e-26	98.33	hypothetical protein Csa_1G009880 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G02440.1	CSPI01G02440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G02440	Csa1G009880	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G02440	CsaV3_1G002490	Cucumber (Chinese Long) v3	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G02440	Cucurbita pepo (Zucchini)	cpecpiB361
CSPI01G02440	Cucurbita pepo (Zucchini)	cpecpiB538
CSPI01G02440	Cucurbita pepo (Zucchini)	cpecpiB656
CSPI01G02440	Bottle gourd (USVL1VR-Ls)	cpilsiB024
CSPI01G02440	Bottle gourd (USVL1VR-Ls)	cpilsiB055
CSPI01G02440	Bottle gourd (USVL1VR-Ls)	cpilsiB070
CSPI01G02440	Melon (DHL92) v3.6.1	cpimedB005
CSPI01G02440	Melon (DHL92) v3.6.1	cpimedB028
CSPI01G02440	Melon (DHL92) v3.6.1	cpimedB049
CSPI01G02440	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G02440	Cucumber (Gy14) v2	cgybcpiB004
CSPI01G02440	Silver-seed gourd	carcpiB0057
CSPI01G02440	Silver-seed gourd	carcpiB0499
CSPI01G02440	Silver-seed gourd	carcpiB0645
CSPI01G02440	Cucumber (Chinese Long) v3	cpicucB003
CSPI01G02440	Cucumber (Chinese Long) v3	cpicucB044
CSPI01G02440	Watermelon (97103) v2	cpiwmbB056
CSPI01G02440	Watermelon (97103) v2	cpiwmbB063
CSPI01G02440	Watermelon (97103) v2	cpiwmbB079
CSPI01G02440	Wax gourd	cpiwgoB053
CSPI01G02440	Wax gourd	cpiwgoB071
CSPI01G02440	Wax gourd	cpiwgoB098
CSPI01G02440	Wild cucumber (PI 183967)	cpicpiB000
CSPI01G02440	Wild cucumber (PI 183967)	cpicpiB029
CSPI01G02440	Cucumber (Gy14) v1	cgycpiB138
CSPI01G02440	Cucumber (Gy14) v1	cgycpiB310
CSPI01G02440	Cucumber (Gy14) v1	cgycpiB427
CSPI01G02440	Cucurbita maxima (Rimu)	cmacpiB049
CSPI01G02440	Cucurbita maxima (Rimu)	cmacpiB098
CSPI01G02440	Cucurbita maxima (Rimu)	cmacpiB432
CSPI01G02440	Cucurbita maxima (Rimu)	cmacpiB693
CSPI01G02440	Cucurbita moschata (Rifu)	cmocpiB040
CSPI01G02440	Cucurbita moschata (Rifu)	cmocpiB079
CSPI01G02440	Cucurbita moschata (Rifu)	cmocpiB422
CSPI01G02440	Cucumber (Chinese Long) v2	cpicuB005
CSPI01G02440	Cucumber (Chinese Long) v2	cpicuB037
CSPI01G02440	Melon (DHL92) v3.5.1	cpimeB005
CSPI01G02440	Melon (DHL92) v3.5.1	cpimeB055
CSPI01G02440	Melon (DHL92) v3.5.1	cpimeB026
CSPI01G02440	Watermelon (Charleston Gray)	cpiwcgB060
CSPI01G02440	Watermelon (Charleston Gray)	cpiwcgB066
CSPI01G02440	Watermelon (Charleston Gray)	cpiwcgB083
CSPI01G02440	Watermelon (97103) v1	cpiwmB039
CSPI01G02440	Watermelon (97103) v1	cpiwmB067
CSPI01G02440	Watermelon (97103) v1	cpiwmB099