Csa1G009720 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G009720
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 1463118 .. 1463449 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACAAAAAGAAAAAAGAAATAATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATGAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAACAAAGGAAAGCT

mRNA sequence

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATGAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

Coding sequence (CDS)

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATGAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

Protein sequence

MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS*

Homology

[Close]

BLAST of Csa1G009720 vs. TrEMBL
Match: A0A0A0LPD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.5e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
          MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
          SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]

BLAST of Csa1G009720 vs. TrEMBL
Match: A0A067ENV6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039594mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 20 LLCV--LDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNL---AAPSPA 79
          L+C+  L  QPQ  + GL +ID  L+W         NT    +   K+L +    AP+P+
Sbjct: 12 LVCIGFLSLQPQNVS-GLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQMNPSLAPAPS 71

Query: 80 MNFDPNQSNKRGVKKGSDPIHNR 98
          + FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 LMFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of Csa1G009720 vs. TrEMBL
Match: A0A164XL16_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016556 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 13 VFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNLAAPS 72
          +F+V+  LL    +Q     +GL ++D AL+++  +S+  +         E NLN+A PS
Sbjct: 10 IFLVSVGLLFAQPRQ----VSGLRSVDLALRFL--RSSRVLKGADVQELHE-NLNMA-PS 69

Query: 73 PAMNFDPNQSNKRGVKKGSDPIHNR 98
          PAM FDPNQSNKR V++GSDPIHNR
Sbjct: 70 PAMMFDPNQSNKRRVRRGSDPIHNR 86

[Close]

BLAST of Csa1G009720 vs. TrEMBL
Match: I1MTT7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G100200 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 3  SLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVA--FKSTNTINTHKADS 62
          SL S +G    FV+ C  + +L  QP    +GL + D AL+W         +    KA++
Sbjct: 2  SLLSFRGF---FVLVC--IGILASQP-FKVSGLRSKDLALRWDEGLLPFVRSFRVLKAEA 61

Query: 63 SDEKNLNLA-APSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
           ++    +  APSP+M FDPNQSNKR V+KG DPIHNRS
Sbjct: 62 VEDLQSKVKLAPSPSMTFDPNQSNKRTVRKGPDPIHNRS 94

[Close]

BLAST of Csa1G009720 vs. TrEMBL
Match: V4VM13_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023845mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 20 LLCV--LDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNL---AAPSPA 79
          L+C+  L  QPQ  + GL +ID  L+W         NT    +   K+L +    AP+P+
Sbjct: 12 LVCIGFLSLQPQNVS-GLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQMNPSLAPAPS 71

Query: 80 MNFDPNQSNKRGVKKGSDPIHNR 98
          + FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 LMFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of Csa1G009720 vs. NCBI nr
Match: gi|700208572|gb|KGN63668.1| (hypothetical protein Csa_1G009720 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
          MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
          SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]

BLAST of Csa1G009720 vs. NCBI nr
Match: gi|1021035528|gb|KZM93311.1| (hypothetical protein DCAR_016556 [Daucus carota subsp. sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 13 VFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNLAAPS 72
          +F+V+  LL    +Q     +GL ++D AL+++  +S+  +         E NLN+A PS
Sbjct: 10 IFLVSVGLLFAQPRQ----VSGLRSVDLALRFL--RSSRVLKGADVQELHE-NLNMA-PS 69

Query: 73 PAMNFDPNQSNKRGVKKGSDPIHNR 98
          PAM FDPNQSNKR V++GSDPIHNR
Sbjct: 70 PAMMFDPNQSNKRRVRRGSDPIHNR 86

[Close]

BLAST of Csa1G009720 vs. NCBI nr
Match: gi|641836602|gb|KDO55565.1| (hypothetical protein CISIN_1g039594mg [Citrus sinensis])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 20 LLCV--LDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNL---AAPSPA 79
          L+C+  L  QPQ  + GL +ID  L+W         NT    +   K+L +    AP+P+
Sbjct: 12 LVCIGFLSLQPQNVS-GLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQMNPSLAPAPS 71

Query: 80 MNFDPNQSNKRGVKKGSDPIHNR 98
          + FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 LMFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of Csa1G009720 vs. NCBI nr
Match: gi|567896222|ref|XP_006440599.1| (hypothetical protein CICLE_v10023845mg [Citrus clementina])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 20 LLCV--LDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDEKNLNL---AAPSPA 79
          L+C+  L  QPQ  + GL +ID  L+W         NT    +   K+L +    AP+P+
Sbjct: 12 LVCIGFLSLQPQNVS-GLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQMNPSLAPAPS 71

Query: 80 MNFDPNQSNKRGVKKGSDPIHNR 98
          + FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 LMFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of Csa1G009720 vs. NCBI nr
Match: gi|947054025|gb|KRH03478.1| (hypothetical protein GLYMA_17G100200 [Glycine max])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 3  SLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVA--FKSTNTINTHKADS 62
          SL S +G    FV+ C  + +L  QP    +GL + D AL+W         +    KA++
Sbjct: 2  SLLSFRGF---FVLVC--IGILASQP-FKVSGLRSKDLALRWDEGLLPFVRSFRVLKAEA 61

Query: 63 SDEKNLNLA-APSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
           ++    +  APSP+M FDPNQSNKR V+KG DPIHNRS
Sbjct: 62 VEDLQSKVKLAPSPSMTFDPNQSNKRTVRKGPDPIHNRS 94

The following BLAST results are available for this feature:

BLAST of Csa1G009720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD5_CUCSA	8.5e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009720 PE=4 SV=1	[more]
A0A067ENV6_CITSI	1.2e-07	45.78	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039594mg PE=4 SV=1	[more]
A0A164XL16_DAUCA	1.2e-07	45.88	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016556 PE=4 SV=1	[more]
I1MTT7_SOYBN	1.6e-07	42.42	Uncharacterized protein OS=Glycine max GN=GLYMA_17G100200 PE=4 SV=1	[more]
V4VM13_9ROSI	1.6e-07	45.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023845mg PE=4 SV=1	[more]

BLAST of Csa1G009720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208572\|gb\|KGN63668.1\|	1.2e-48	100.00	hypothetical protein Csa_1G009720 [Cucumis sativus]	[more]
gi\|1021035528\|gb\|KZM93311.1\|	1.8e-07	45.88	hypothetical protein DCAR_016556 [Daucus carota subsp. sativus]	[more]
gi\|641836602\|gb\|KDO55565.1\|	1.8e-07	45.78	hypothetical protein CISIN_1g039594mg [Citrus sinensis]	[more]
gi\|567896222\|ref\|XP_006440599.1\|	2.3e-07	45.78	hypothetical protein CICLE_v10023845mg [Citrus clementina]	[more]
gi\|947054025\|gb\|KRH03478.1\|	2.3e-07	42.42	hypothetical protein GLYMA_17G100200 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G009720.1	Csa1G009720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36726	FAMILY NOT NAMED	coord: 70..98 score: 2.1
None	No IPR available	PANTHER	PTHR36726:SF2	SUBFAMILY NOT NAMED	coord: 70..98 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G009720	MELO3C017172	Melon (DHL92) v3.5.1	cumeB054
Csa1G009720	Lsi06G014660	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G009720	MELO3C017172.2	Melon (DHL92) v3.6.1	cumedB046
Csa1G009720	Bhi08G000976	Wax gourd	cuwgoB054
Csa1G009720	CSPI01G02260	Wild cucumber (PI 183967)	cpicuB000
Csa1G009720	CmaCh11G001450	Cucurbita maxima (Rimu)	cmacuB097
Csa1G009720	CmaCh10G001890	Cucurbita maxima (Rimu)	cmacuB048
Csa1G009720	CmoCh11G001630	Cucurbita moschata (Rifu)	cmocuB076
Csa1G009720	CmoCh10G002060	Cucurbita moschata (Rifu)	cmocuB037
Csa1G009720	Cp4.1LG04g14830	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G009720	Cp4.1LG18g07820	Cucurbita pepo (Zucchini)	cpecuB361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G009720	Watermelon (97103) v2	cuwmbB055
Csa1G009720	Watermelon (97103) v2	cuwmbB060
Csa1G009720	Watermelon (97103) v2	cuwmbB078
Csa1G009720	Watermelon (97103) v2	cuwmbB091
Csa1G009720	Wax gourd	cuwgoB009
Csa1G009720	Wax gourd	cuwgoB070
Csa1G009720	Wax gourd	cuwgoB095
Csa1G009720	Cucumber (Chinese Long) v2	cucuB000
Csa1G009720	Cucumber (Chinese Long) v2	cucuB029
Csa1G009720	Watermelon (97103) v1	cuwmB094
Csa1G009720	Cucumber (Gy14) v1	cgycuB138
Csa1G009720	Cucumber (Gy14) v1	cgycuB299
Csa1G009720	Cucumber (Gy14) v1	cgycuB404
Csa1G009720	Cucumber (Gy14) v1	cgycuB475
Csa1G009720	Cucurbita maxima (Rimu)	cmacuB216
Csa1G009720	Cucurbita maxima (Rimu)	cmacuB235
Csa1G009720	Cucurbita maxima (Rimu)	cmacuB429
Csa1G009720	Cucurbita maxima (Rimu)	cmacuB685
Csa1G009720	Cucurbita moschata (Rifu)	cmocuB200
Csa1G009720	Cucurbita moschata (Rifu)	cmocuB222
Csa1G009720	Cucurbita moschata (Rifu)	cmocuB418
Csa1G009720	Cucurbita moschata (Rifu)	cmocuB673
Csa1G009720	Melon (DHL92) v3.5.1	cumeB009
Csa1G009720	Melon (DHL92) v3.5.1	cumeB030
Csa1G009720	Watermelon (Charleston Gray)	cuwcgB003
Csa1G009720	Watermelon (Charleston Gray)	cuwcgB058
Csa1G009720	Watermelon (Charleston Gray)	cuwcgB062
Csa1G009720	Watermelon (Charleston Gray)	cuwcgB081
Csa1G009720	Watermelon (97103) v1	cuwmB003
Csa1G009720	Watermelon (97103) v1	cuwmB037
Csa1G009720	Watermelon (97103) v1	cuwmB063
Csa1G009720	Cucurbita pepo (Zucchini)	cpecuB536
Csa1G009720	Bottle gourd (USVL1VR-Ls)	culsiB025
Csa1G009720	Bottle gourd (USVL1VR-Ls)	culsiB043
Csa1G009720	Bottle gourd (USVL1VR-Ls)	culsiB056
Csa1G009720	Cucumber (Gy14) v2	cgybcuB001
Csa1G009720	Cucumber (Gy14) v2	cgybcuB005
Csa1G009720	Melon (DHL92) v3.6.1	cumedB004
Csa1G009720	Melon (DHL92) v3.6.1	cumedB026
Csa1G009720	Melon (DHL92) v3.6.1	cumedB060
Csa1G009720	Silver-seed gourd	carcuB0053
Csa1G009720	Silver-seed gourd	carcuB0391
Csa1G009720	Silver-seed gourd	carcuB0418
Csa1G009720	Silver-seed gourd	carcuB0638