CSPI01G02260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G02260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 1472157 .. 1472634 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCCATATAAACAAATTTTGGAATTTGGTTTTGTTGAGTACAAACACAAAACCAAAACACACACACAAAAAAAAAAAAACGAAATAATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATCAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAACAAAGGAAAGCTCATCAAGAGAGATGAAGAAAAAACTCCCATTTCATTTGGTACTTTTCATTATATTATATATATATAATTTTCTATCTTGGGT

mRNA sequence

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATCAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA

Coding sequence (CDS)

ATGGGTTCCTTGTTTAGCAGGAAAGGTTTGAGGTTTGTGTTTGTTGTAGCTTGTTTTTTGCTGTGTGTTCTTGATCAACAGCCTCAAACAACAGCAAATGGGCTTAGCACAATTGATGCTGCTCTCAAATGGGTAGCTTTCAAATCCACAAATACTATCAACACCCACAAAGCTGATTCATCAGATCAGAAAAATTTGAATTTAGCAGCTCCATCACCAGCCATGAACTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGATCCAATTCACAACAGATCTTAA
Homology
[Close]
BLAST of CSPI01G02260 vs. TrEMBL
Match: A0A0A0LPD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-47
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
          MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
          SD+KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]
BLAST of CSPI01G02260 vs. TrEMBL
Match: I1MTT7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G100200 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 3  SLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKW----VAFKSTNTINTHKA 62
          SL S +G    FV+ C  + +L  QP    +GL + D AL+W    + F  +  +   +A
Sbjct: 2  SLLSFRGF---FVLVC--IGILASQP-FKVSGLRSKDLALRWDEGLLPFVRSFRVLKAEA 61

Query: 63 DSSDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
              Q  + LA PSP+M FDPNQSNKR V+KG DPIHNRS
Sbjct: 62 VEDLQSKVKLA-PSPSMTFDPNQSNKRTVRKGPDPIHNRS 94

[Close]
BLAST of CSPI01G02260 vs. TrEMBL
Match: A0A0B2QEY0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_006966 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 3  SLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKW----VAFKSTNTINTHKA 62
          SL S +G    FV+ C  + +L  QP    +GL + D AL+W    + F  +  +   +A
Sbjct: 2  SLLSFRGF---FVLVC--VGILASQP-FKVSGLRSKDLALRWDEGLLPFVRSFRVLKAEA 61

Query: 63 DSSDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
              Q  + LA PSP+M FDPNQSNKR V+KG DPIHNRS
Sbjct: 62 VEDFQSKVELA-PSPSMTFDPNQSNKRTVRKGPDPIHNRS 94

[Close]
BLAST of CSPI01G02260 vs. TrEMBL
Match: A0A067ENV6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039594mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 20 LLCV--LDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDQKNLNL---AAPSPA 79
          L+C+  L  QPQ  + GL +ID  L+W         NT    +   K+L +    AP+P+
Sbjct: 12 LVCIGFLSLQPQNVS-GLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQMNPSLAPAPS 71

Query: 80 MNFDPNQSNKRGVKKGSDPIHNR 98
          + FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 LMFDPNQSNKRKVRKGSDPIHNR 93

[Close]
BLAST of CSPI01G02260 vs. TrEMBL
Match: V4VM13_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023845mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 20 LLCV--LDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDQKNLNL---AAPSPA 79
          L+C+  L  QPQ  + GL +ID  L+W         NT    +   K+L +    AP+P+
Sbjct: 12 LVCIGFLSLQPQNVS-GLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQMNPSLAPAPS 71

Query: 80 MNFDPNQSNKRGVKKGSDPIHNR 98
          + FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 LMFDPNQSNKRKVRKGSDPIHNR 93

[Close]
BLAST of CSPI01G02260 vs. NCBI nr
Match: gi|700208572|gb|KGN63668.1| (hypothetical protein Csa_1G009720 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-47
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
          MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
          SD+KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]
BLAST of CSPI01G02260 vs. NCBI nr
Match: gi|641836602|gb|KDO55565.1| (hypothetical protein CISIN_1g039594mg [Citrus sinensis])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 20 LLCV--LDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDQKNLNL---AAPSPA 79
          L+C+  L  QPQ  + GL +ID  L+W         NT    +   K+L +    AP+P+
Sbjct: 12 LVCIGFLSLQPQNVS-GLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQMNPSLAPAPS 71

Query: 80 MNFDPNQSNKRGVKKGSDPIHNR 98
          + FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 LMFDPNQSNKRKVRKGSDPIHNR 93

[Close]
BLAST of CSPI01G02260 vs. NCBI nr
Match: gi|734367907|gb|KHN18553.1| (hypothetical protein glysoja_006966 [Glycine soja])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 3  SLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKW----VAFKSTNTINTHKA 62
          SL S +G    FV+ C  + +L  QP    +GL + D AL+W    + F  +  +   +A
Sbjct: 2  SLLSFRGF---FVLVC--VGILASQP-FKVSGLRSKDLALRWDEGLLPFVRSFRVLKAEA 61

Query: 63 DSSDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
              Q  + LA PSP+M FDPNQSNKR V+KG DPIHNRS
Sbjct: 62 VEDFQSKVELA-PSPSMTFDPNQSNKRTVRKGPDPIHNRS 94

[Close]
BLAST of CSPI01G02260 vs. NCBI nr
Match: gi|947054025|gb|KRH03478.1| (hypothetical protein GLYMA_17G100200 [Glycine max])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 3  SLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKW----VAFKSTNTINTHKA 62
          SL S +G    FV+ C  + +L  QP    +GL + D AL+W    + F  +  +   +A
Sbjct: 2  SLLSFRGF---FVLVC--IGILASQP-FKVSGLRSKDLALRWDEGLLPFVRSFRVLKAEA 61

Query: 63 DSSDQKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 99
              Q  + LA PSP+M FDPNQSNKR V+KG DPIHNRS
Sbjct: 62 VEDLQSKVKLA-PSPSMTFDPNQSNKRTVRKGPDPIHNRS 94

[Close]
BLAST of CSPI01G02260 vs. NCBI nr
Match: gi|567896222|ref|XP_006440599.1| (hypothetical protein CICLE_v10023845mg [Citrus clementina])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 20 LLCV--LDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDQKNLNL---AAPSPA 79
          L+C+  L  QPQ  + GL +ID  L+W         NT    +   K+L +    AP+P+
Sbjct: 12 LVCIGFLSLQPQNVS-GLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQMNPSLAPAPS 71

Query: 80 MNFDPNQSNKRGVKKGSDPIHNR 98
          + FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 LMFDPNQSNKRKVRKGSDPIHNR 93

The following BLAST results are available for this feature:
BLAST of CSPI01G02260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G02260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPD5_CUCSA2.1e-4798.98Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009720 PE=4 SV=1[more]
I1MTT7_SOYBN1.0e-0644.00Uncharacterized protein OS=Glycine max GN=GLYMA_17G100200 PE=4 SV=1[more]
A0A0B2QEY0_GLYSO1.0e-0644.00Uncharacterized protein OS=Glycine soja GN=glysoja_006966 PE=4 SV=1[more]
A0A067ENV6_CITSI1.0e-0645.78Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039594mg PE=4 SV=1[more]
V4VM13_9ROSI1.4e-0645.78Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023845mg PE=4 SV=1[more]
BLAST of CSPI01G02260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G02260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208572|gb|KGN63668.1|3.0e-4798.98hypothetical protein Csa_1G009720 [Cucumis sativus][more]
gi|641836602|gb|KDO55565.1|1.5e-0645.78hypothetical protein CISIN_1g039594mg [Citrus sinensis][more]
gi|734367907|gb|KHN18553.1|1.5e-0644.00hypothetical protein glysoja_006966 [Glycine soja][more]
gi|947054025|gb|KRH03478.1|1.5e-0644.00hypothetical protein GLYMA_17G100200 [Glycine max][more]
gi|567896222|ref|XP_006440599.1|2.0e-0645.78hypothetical protein CICLE_v10023845mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G02260.1CSPI01G02260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36726FAMILY NOT NAMEDcoord: 63..98
score: 9.7
NoneNo IPR availablePANTHERPTHR36726:SF2SUBFAMILY NOT NAMEDcoord: 63..98
score: 9.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G02260Csa1G009720Cucumber (Chinese Long) v2cpicuB000
CSPI01G02260MELO3C017172Melon (DHL92) v3.5.1cpimeB055
CSPI01G02260Lsi06G014660Bottle gourd (USVL1VR-Ls)cpilsiB070
CSPI01G02260MELO3C017172.2Melon (DHL92) v3.6.1cpimedB049
CSPI01G02260CsaV3_1G005510Cucumber (Chinese Long) v3cpicucB003
CSPI01G02260CsaV3_1G002320Cucumber (Chinese Long) v3cpicucB001
CSPI01G02260Bhi08G000976Wax gourdcpiwgoB053
CSPI01G02260CmaCh10G001890Cucurbita maxima (Rimu)cmacpiB049
CSPI01G02260CmaCh11G001450Cucurbita maxima (Rimu)cmacpiB098
CSPI01G02260CmoCh11G001630Cucurbita moschata (Rifu)cmocpiB079
CSPI01G02260CmoCh10G002060Cucurbita moschata (Rifu)cmocpiB040
CSPI01G02260Cp4.1LG04g14830Cucurbita pepo (Zucchini)cpecpiB656
CSPI01G02260Cp4.1LG18g07820Cucurbita pepo (Zucchini)cpecpiB361
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G02260Cucumber (Chinese Long) v3cpicucB044
CSPI01G02260Cucumber (Chinese Long) v3cpicucB047
CSPI01G02260Watermelon (97103) v2cpiwmbB056
CSPI01G02260Watermelon (97103) v2cpiwmbB063
CSPI01G02260Watermelon (97103) v2cpiwmbB079
CSPI01G02260Watermelon (97103) v2cpiwmbB092
CSPI01G02260Wax gourdcpiwgoB010
CSPI01G02260Wax gourdcpiwgoB071
CSPI01G02260Wax gourdcpiwgoB098
CSPI01G02260Wild cucumber (PI 183967)cpicpiB000
CSPI01G02260Wild cucumber (PI 183967)cpicpiB029
CSPI01G02260Wild cucumber (PI 183967)cpicpiB034
CSPI01G02260Cucumber (Gy14) v1cgycpiB138
CSPI01G02260Cucumber (Gy14) v1cgycpiB234
CSPI01G02260Cucumber (Gy14) v1cgycpiB310
CSPI01G02260Cucumber (Gy14) v1cgycpiB427
CSPI01G02260Cucumber (Gy14) v1cgycpiB501
CSPI01G02260Cucurbita maxima (Rimu)cmacpiB237
CSPI01G02260Cucurbita maxima (Rimu)cmacpiB432
CSPI01G02260Cucurbita maxima (Rimu)cmacpiB693
CSPI01G02260Cucurbita moschata (Rifu)cmocpiB225
CSPI01G02260Cucurbita moschata (Rifu)cmocpiB422
CSPI01G02260Cucurbita moschata (Rifu)cmocpiB687
CSPI01G02260Cucurbita moschata (Rifu)cmocpiB688
CSPI01G02260Cucumber (Chinese Long) v2cpicuB005
CSPI01G02260Cucumber (Chinese Long) v2cpicuB037
CSPI01G02260Melon (DHL92) v3.5.1cpimeB005
CSPI01G02260Melon (DHL92) v3.5.1cpimeB026
CSPI01G02260Watermelon (Charleston Gray)cpiwcgB003
CSPI01G02260Watermelon (Charleston Gray)cpiwcgB005
CSPI01G02260Watermelon (Charleston Gray)cpiwcgB060
CSPI01G02260Watermelon (Charleston Gray)cpiwcgB066
CSPI01G02260Watermelon (Charleston Gray)cpiwcgB083
CSPI01G02260Watermelon (97103) v1cpiwmB003
CSPI01G02260Watermelon (97103) v1cpiwmB039
CSPI01G02260Watermelon (97103) v1cpiwmB067
CSPI01G02260Watermelon (97103) v1cpiwmB099
CSPI01G02260Cucurbita pepo (Zucchini)cpecpiB538
CSPI01G02260Bottle gourd (USVL1VR-Ls)cpilsiB024
CSPI01G02260Bottle gourd (USVL1VR-Ls)cpilsiB044
CSPI01G02260Bottle gourd (USVL1VR-Ls)cpilsiB055
CSPI01G02260Melon (DHL92) v3.6.1cpimedB002
CSPI01G02260Melon (DHL92) v3.6.1cpimedB005
CSPI01G02260Melon (DHL92) v3.6.1cpimedB028
CSPI01G02260Melon (DHL92) v3.6.1cpimedB059
CSPI01G02260Cucumber (Gy14) v2cgybcpiB001
CSPI01G02260Cucumber (Gy14) v2cgybcpiB004
CSPI01G02260Silver-seed gourdcarcpiB0057
CSPI01G02260Silver-seed gourdcarcpiB0396
CSPI01G02260Silver-seed gourdcarcpiB0422
CSPI01G02260Silver-seed gourdcarcpiB0645
CSPI01G02260Silver-seed gourdcarcpiB0715