CmaCh11G001450 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G001450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Clavata3/esr-related 45, putative
Location	Cma_Chr11 : 772210 .. 772488 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAGCACCAAAGCTTTGGTCTTTGCCTTACTTGTGGCTGGGTTGTCTCTGTGTGTTCAACCCCAAACAGCATCTGGGCTCACCACCATTGATCTTGCTCTCAAATGGGTGGCCTTCAAATCGCCAATTACCAACACCCACAACCCTGATTCTGTGAAGAAATTGAAGATGAAGAACATGAGCCTGGCTCCTTCACCAGCCATGCATTTTGACCCCAATCAGTCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGATCCTAG

mRNA sequence

ATGCTTAGCACCAAAGCTTTGGTCTTTGCCTTACTTGTGGCTGGGTTGTCTCTGTGTGTTCAACCCCAAACAGCATCTGGGCTCACCACCATTGATCTTGCTCTCAAATGGGTGGCCTTCAAATCGCCAATTACCAACACCCACAACCCTGATTCTGTGAAGAAATTGAAGATGAAGAACATGAGCCTGGCTCCTTCACCAGCCATGCATTTTGACCCCAATCAGTCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGATCCTAG

Coding sequence (CDS)

ATGCTTAGCACCAAAGCTTTGGTCTTTGCCTTACTTGTGGCTGGGTTGTCTCTGTGTGTTCAACCCCAAACAGCATCTGGGCTCACCACCATTGATCTTGCTCTCAAATGGGTGGCCTTCAAATCGCCAATTACCAACACCCACAACCCTGATTCTGTGAAGAAATTGAAGATGAAGAACATGAGCCTGGCTCCTTCACCAGCCATGCATTTTGACCCCAATCAGTCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGATCCTAG

Protein sequence

MLSTKALVFALLVAGLSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKNMSLAPSPAMHFDPNQSNKRGVKKGSDPIHNRS

Homology

[Close]

BLAST of CmaCh11G001450 vs. TrEMBL
Match: A0A0A0LPD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 1  MLSTKALVFALLVAGLSLCV---QPQT-ASGLTTIDLALKWVAFKSPIT-NTHNPDSVKK 60
          + S K L F  +VA   LCV   QPQT A+GL+TID ALKWVAFKS  T NTH  DS  +
Sbjct: 4  LFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDE 63

Query: 61 LKMKNMSLA-PSPAMHFDPNQSNKRGVKKGSDPIHNRS 93
             KN++LA PSPAM+FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 64 ---KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]

BLAST of CmaCh11G001450 vs. TrEMBL
Match: A0A067ENV6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039594mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-11
Identity = 48/86 (55.81%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 9  FALLVAGLSLCVQPQTASGLTTIDLALKWVAFKSP-ITNTHNPDSV--KKLKMKNMSLAP 68
          F LLV    L +QPQ  SGL +IDL L+W     P + NT    +V  K L+M N SLAP
Sbjct: 9  FILLVCIGFLSLQPQNVSGLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLAP 68

Query: 69 SPAMHFDPNQSNKRGVKKGSDPIHNR 92
          +P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 69 APSLMFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of CmaCh11G001450 vs. TrEMBL
Match: V4VM13_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023845mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1


Query: 9  FALLVAGLSLCVQPQTASGLTTIDLALKWVAFKSP-ITNTHNPDSV--KKLKMKNMSLAP 68
          F LLV    L +QPQ  SGL +ID  L+W     P + NT    +V  K L+M N SLAP
Sbjct: 9  FILLVCIGFLSLQPQNVSGLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLAP 68

Query: 69 SPAMHFDPNQSNKRGVKKGSDPIHNR 92
          +P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 69 APSLMFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of CmaCh11G001450 vs. TrEMBL
Match: M5WYZ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017808mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-10
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 18 LCVQPQTASGLTTIDLALKW-VAFKSPITNTH--NPDSVKKLKMKNMSLAPSPAMHFDPN 77
          L +QP+  SGL ++DLAL+W     S + + H     +V+ L+ K +SLAP+P+M FDPN
Sbjct: 18 LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQAK-LSLAPAPSMTFDPN 77

Query: 78 QSNKRGVKKGSDPIHNR 92
          QSNKR V+KGSDPIHNR
Sbjct: 78 QSNKRKVRKGSDPIHNR 93

[Close]

BLAST of CmaCh11G001450 vs. TrEMBL
Match: A0A151RXA7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_031215 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-09
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 4  TKALVFALLVAGLSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKNMSL 63
          T    F L+  G+ L  QP+  SGL + DLAL+    KSP+  T +  S        + L
Sbjct: 5  TMQCFFVLVCVGI-LASQPRIVSGLRSKDLALRRDNRKSPLVATEDLQS-------QLDL 64

Query: 64 APSPAMHFDPNQSNKRGVKKGSDPIHNR 92
          AP+P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 65 APAPSMTFDPNQSNKRTVRKGSDPIHNR 84

[Close]

BLAST of CmaCh11G001450 vs. NCBI nr
Match: gi|700208572|gb|KGN63668.1| (hypothetical protein Csa_1G009720 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-19
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 1  MLSTKALVFALLVAGLSLCV---QPQT-ASGLTTIDLALKWVAFKSPIT-NTHNPDSVKK 60
          + S K L F  +VA   LCV   QPQT A+GL+TID ALKWVAFKS  T NTH  DS  +
Sbjct: 4  LFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSSDE 63

Query: 61 LKMKNMSLA-PSPAMHFDPNQSNKRGVKKGSDPIHNRS 93
             KN++LA PSPAM+FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 64 ---KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

[Close]

BLAST of CmaCh11G001450 vs. NCBI nr
Match: gi|641836602|gb|KDO55565.1| (hypothetical protein CISIN_1g039594mg [Citrus sinensis])

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-11
Identity = 48/86 (55.81%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 9  FALLVAGLSLCVQPQTASGLTTIDLALKWVAFKSP-ITNTHNPDSV--KKLKMKNMSLAP 68
          F LLV    L +QPQ  SGL +IDL L+W     P + NT    +V  K L+M N SLAP
Sbjct: 9  FILLVCIGFLSLQPQNVSGLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLAP 68

Query: 69 SPAMHFDPNQSNKRGVKKGSDPIHNR 92
          +P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 69 APSLMFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of CmaCh11G001450 vs. NCBI nr
Match: gi|567896222|ref|XP_006440599.1| (hypothetical protein CICLE_v10023845mg [Citrus clementina])

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1


Query: 9  FALLVAGLSLCVQPQTASGLTTIDLALKWVAFKSP-ITNTHNPDSV--KKLKMKNMSLAP 68
          F LLV    L +QPQ  SGL +ID  L+W     P + NT    +V  K L+M N SLAP
Sbjct: 9  FILLVCIGFLSLQPQNVSGLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLAP 68

Query: 69 SPAMHFDPNQSNKRGVKKGSDPIHNR 92
          +P++ FDPNQSNKR V+KGSDPIHNR
Sbjct: 69 APSLMFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of CmaCh11G001450 vs. NCBI nr
Match: gi|595858850|ref|XP_007210831.1| (hypothetical protein PRUPE_ppa017808mg [Prunus persica])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 18 LCVQPQTASGLTTIDLALKW-VAFKSPITNTH--NPDSVKKLKMKNMSLAPSPAMHFDPN 77
          L +QP+  SGL ++DLAL+W     S + + H     +V+ L+ K +SLAP+P+M FDPN
Sbjct: 18 LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQAK-LSLAPAPSMTFDPN 77

Query: 78 QSNKRGVKKGSDPIHNR 92
          QSNKR V+KGSDPIHNR
Sbjct: 78 QSNKRKVRKGSDPIHNR 93

[Close]

BLAST of CmaCh11G001450 vs. NCBI nr
Match: gi|1012335874|gb|KYP47191.1| (hypothetical protein KK1_031215 [Cajanus cajan])

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-09
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 1


Query: 4  TKALVFALLVAGLSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKNMSL 63
          T    F L+  G+ L  QP+  SGL + DLAL+    KSP+  T +  S        + L
Sbjct: 5  TMQCFFVLVCVGI-LASQPRIVSGLRSKDLALRRDNRKSPLVATEDLQS-------QLDL 64

Query: 64 APSPAMHFDPNQSNKRGVKKGSDPIHNR 92
          AP+P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 65 APAPSMTFDPNQSNKRTVRKGSDPIHNR 84

The following BLAST results are available for this feature:

BLAST of CmaCh11G001450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh11G001450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD5_CUCSA	2.9e-19	66.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009720 PE=4 SV=1	[more]
A0A067ENV6_CITSI	6.5e-11	55.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039594mg PE=4 SV=1	[more]
V4VM13_9ROSI	1.9e-10	54.65	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023845mg PE=4 SV=1	[more]
M5WYZ5_PRUPE	7.2e-10	53.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017808mg PE=4 SV=1	[more]
A0A151RXA7_CAJCA	3.6e-09	48.86	Uncharacterized protein OS=Cajanus cajan GN=KK1_031215 PE=4 SV=1	[more]

BLAST of CmaCh11G001450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh11G001450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208572\|gb\|KGN63668.1\|	4.2e-19	66.33	hypothetical protein Csa_1G009720 [Cucumis sativus]	[more]
gi\|641836602\|gb\|KDO55565.1\|	9.3e-11	55.81	hypothetical protein CISIN_1g039594mg [Citrus sinensis]	[more]
gi\|567896222\|ref\|XP_006440599.1\|	2.7e-10	54.65	hypothetical protein CICLE_v10023845mg [Citrus clementina]	[more]
gi\|595858850\|ref\|XP_007210831.1\|	1.0e-09	53.25	hypothetical protein PRUPE_ppa017808mg [Prunus persica]	[more]
gi\|1012335874\|gb\|KYP47191.1\|	5.1e-09	48.86	hypothetical protein KK1_031215 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G001450.1	CmaCh11G001450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36726	FAMILY NOT NAMED	coord: 9..92 score: 1.1
None	No IPR available	PANTHER	PTHR36726:SF2	SUBFAMILY NOT NAMED	coord: 9..92 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G001450	Cla018607	Watermelon (97103) v1	cmawmB119
CmaCh11G001450	Csa1G009720	Cucumber (Chinese Long) v2	cmacuB097
CmaCh11G001450	Csa1G033220	Cucumber (Chinese Long) v2	cmacuB105
CmaCh11G001450	MELO3C001984	Melon (DHL92) v3.5.1	cmameB089
CmaCh11G001450	MELO3C017172	Melon (DHL92) v3.5.1	cmameB106
CmaCh11G001450	ClCG04G012240	Watermelon (Charleston Gray)	cmawcgB118
CmaCh11G001450	CSPI01G05640	Wild cucumber (PI 183967)	cmacpiB104
CmaCh11G001450	CSPI01G02260	Wild cucumber (PI 183967)	cmacpiB098
CmaCh11G001450	CmoCh10G002060	Cucurbita moschata (Rifu)	cmacmoB107
CmaCh11G001450	CmoCh11G001630	Cucurbita moschata (Rifu)	cmacmoB118
CmaCh11G001450	CmoCh13G011870	Cucurbita moschata (Rifu)	cmacmoB127
CmaCh11G001450	CmoCh01G008260	Cucurbita moschata (Rifu)	cmacmoB140
CmaCh11G001450	Lsi06G014660	Bottle gourd (USVL1VR-Ls)	cmalsiB129
CmaCh11G001450	Cp4.1LG18g07820	Cucurbita pepo (Zucchini)	cmacpeB127
CmaCh11G001450	Cp4.1LG04g14830	Cucurbita pepo (Zucchini)	cmacpeB149
CmaCh11G001450	MELO3C001984.2	Melon (DHL92) v3.6.1	cmamedB097
CmaCh11G001450	MELO3C017172.2	Melon (DHL92) v3.6.1	cmamedB113
CmaCh11G001450	CsaV3_1G005510	Cucumber (Chinese Long) v3	cmacucB0119
CmaCh11G001450	CsaV3_1G002320	Cucumber (Chinese Long) v3	cmacucB0112
CmaCh11G001450	Cla97C04G079190	Watermelon (97103) v2	cmawmbB121
CmaCh11G001450	Bhi08G000976	Wax gourd	cmawgoB0136
CmaCh11G001450	Carg21673	Silver-seed gourd	carcmaB0063

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh11G001450	CmaCh10G001890	Cucurbita maxima (Rimu)	cmacmaB079
CmaCh11G001450	CmaCh13G011340	Cucurbita maxima (Rimu)	cmacmaB129
CmaCh11G001450	CmaCh01G007880	Cucurbita maxima (Rimu)	cmacmaB143

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G001450	Melon (DHL92) v3.6.1	cmamedB087
CmaCh11G001450	Silver-seed gourd	carcmaB0512
CmaCh11G001450	Silver-seed gourd	carcmaB0539
CmaCh11G001450	Silver-seed gourd	carcmaB0861
CmaCh11G001450	Cucumber (Chinese Long) v3	cmacucB0159
CmaCh11G001450	Watermelon (97103) v2	cmawmbB131
CmaCh11G001450	Watermelon (97103) v2	cmawmbB154
CmaCh11G001450	Wax gourd	cmawgoB0102
CmaCh11G001450	Wax gourd	cmawgoB0151
CmaCh11G001450	Cucumber (Gy14) v1	cgycmaB0261
CmaCh11G001450	Cucumber (Gy14) v1	cgycmaB0578
CmaCh11G001450	Cucurbita moschata (Rifu)	cmacmoB158
CmaCh11G001450	Watermelon (Charleston Gray)	cmawcgB080
CmaCh11G001450	Watermelon (Charleston Gray)	cmawcgB127
CmaCh11G001450	Watermelon (97103) v1	cmawmB136
CmaCh11G001450	Cucurbita pepo (Zucchini)	cmacpeB142
CmaCh11G001450	Bottle gourd (USVL1VR-Ls)	cmalsiB109
CmaCh11G001450	Bottle gourd (USVL1VR-Ls)	cmalsiB111
CmaCh11G001450	Cucumber (Gy14) v2	cgybcmaB040
CmaCh11G001450	Cucumber (Gy14) v2	cgybcmaB046