Csa1G008460 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATAATTGTTGCTTTGGAAGCTCTGTTTTATAGAATTTTGTCTTATGGTAAGCTCTACCGAGATGGATTCATATCTCCGCCTTCAATCTCCTCCTCATTCTTGCTTCCCCTCTCGTCATCCCAATCAGAACAAAAACAGAGGAATCTGTTTTCAAAATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGTTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCGTCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGAATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAACGACCGTCGGCCATATCATCGTAG ATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGTTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCGTCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGAATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAACGACCGTCGGCCATATCATCGTAG ATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGTTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCGTCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGAATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAACGACCGTCGGCCATATCATCGTAG MKLQITDDPTEYHCVPSEEKINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLAVTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRPSAISS*
BLAST of Csa1G008460 vs. TrEMBL
Match: A0A0A0LRL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008460 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 3.4e-63 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
BLAST of Csa1G008460 vs. TrEMBL
Match: A0A0A0LUE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008470 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 4.6e-20 Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1
BLAST of Csa1G008460 vs. TrEMBL
Match: A0A151S7C4_CAJCA (Putative transporter MCH1 OS=Cajanus cajan GN=KK1_027511 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 2.3e-19 Identity = 46/90 (51.11%), Postives = 68/90 (75.56%), Query Frame = 1
BLAST of Csa1G008460 vs. TrEMBL
Match: A0A151S7C4_CAJCA (Putative transporter MCH1 OS=Cajanus cajan GN=KK1_027511 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12 Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
HSP 2 Score: 100.5 bits (249), Expect = 1.5e-18 Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1
BLAST of Csa1G008460 vs. TrEMBL
Match: A0A067GBJ1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008597mg PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18 Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1
BLAST of Csa1G008460 vs. TAIR10
Match: AT2G34350.1 (AT2G34350.1 Nodulin-like / Major Facilitator Superfamily protein) HSP 1 Score: 92.4 bits (228), Expect = 2.0e-19 Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 1
BLAST of Csa1G008460 vs. TAIR10
Match: AT2G34355.1 (AT2G34355.1 Major facilitator superfamily protein) HSP 1 Score: 89.4 bits (220), Expect = 1.7e-18 Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
BLAST of Csa1G008460 vs. TAIR10
Match: AT1G18940.1 (AT1G18940.1 Nodulin-like / Major Facilitator Superfamily protein) HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16 Identity = 32/70 (45.71%), Postives = 53/70 (75.71%), Query Frame = 1
BLAST of Csa1G008460 vs. TAIR10
Match: AT1G74780.1 (AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein) HSP 1 Score: 80.5 bits (197), Expect = 8.0e-16 Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 1
BLAST of Csa1G008460 vs. TAIR10
Match: AT3G01930.2 (AT3G01930.2 Major facilitator superfamily protein) HSP 1 Score: 70.9 bits (172), Expect = 6.4e-13 Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1
BLAST of Csa1G008460 vs. NCBI nr
Match: gi|700208543|gb|KGN63639.1| (hypothetical protein Csa_1G008460 [Cucumis sativus]) HSP 1 Score: 248.8 bits (634), Expect = 4.8e-63 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
BLAST of Csa1G008460 vs. NCBI nr
Match: gi|659105754|ref|XP_008453166.1| (PREDICTED: uncharacterized protein LOC103493962 [Cucumis melo]) HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20 Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1
BLAST of Csa1G008460 vs. NCBI nr
Match: gi|778655863|ref|XP_011659929.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis sativus]) HSP 1 Score: 105.5 bits (262), Expect = 6.6e-20 Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1
BLAST of Csa1G008460 vs. NCBI nr
Match: gi|1009181900|ref|XP_015872421.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Ziziphus jujuba]) HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19 Identity = 48/99 (48.48%), Postives = 71/99 (71.72%), Query Frame = 1
BLAST of Csa1G008460 vs. NCBI nr
Match: gi|1012339462|gb|KYP50694.1| (putative transporter MCH1 [Cajanus cajan]) HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19 Identity = 46/90 (51.11%), Postives = 68/90 (75.56%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |