Csa1G008460.1 (mRNA) Cucumber (Chinese Long) v2

NameCsa1G008460.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNodulin-like protein
LocationChr1 : 1292256 .. 1292779 (-)
Sequence length369
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAATTGTTGCTTTGGAAGCTCTGTTTTATAGAATTTTGTCTTATGGTAAGCTCTACCGAGATGGATTCATATCTCCGCCTTCAATCTCCTCCTCATTCTTGCTTCCCCTCTCGTCATCCCAATCAGAACAAAAACAGAGGAATCTGTTTTCAAAATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGTTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCGTCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGAATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAACGACCGTCGGCCATATCATCGTAG

mRNA sequence

ATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGTTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCGTCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGAATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAACGACCGTCGGCCATATCATCGTAG

Coding sequence (CDS)

ATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGTTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCGTCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGAATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAACGACCGTCGGCCATATCATCGTAG

Protein sequence

MKLQITDDPTEYHCVPSEEKINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLAVTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRPSAISS*
BLAST of Csa1G008460.1 vs. TrEMBL
Match: A0A0A0LRL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008460 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.4e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1

Query: 1   MKLQITDDPTEYHCVPSEEKINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLA 60
           MKLQITDDPTEYHCVPSEEKINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLA
Sbjct: 1   MKLQITDDPTEYHCVPSEEKINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLA 60

Query: 61  VTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRPSAI 120
           VTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRPSAI
Sbjct: 61  VTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRPSAI 120

Query: 121 SS 123
           SS
Sbjct: 121 SS 122

BLAST of Csa1G008460.1 vs. TrEMBL
Match: A0A0A0LUE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008470 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-20
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1

Query: 7   DDPTEYHCVPSEEKINDELMIVKD----REMNIIESIGTVNFWLLFFTMTWGMGSGLAVT 66
           +D  EYH +P EE   +++M+V +    + MN++E+I T+NFWLLF  M  GMGSGLA  
Sbjct: 295 EDSVEYHELPREE---NQIMVVSNTRAPQTMNVLEAIRTINFWLLFLAMVCGMGSGLATI 354

Query: 67  DNMNQLSQSLGYRTVQINTFVSLWSIWNFLGR 95
           +NM+QL QSLGY   +  TFVSLWSIWNFLGR
Sbjct: 355 NNMSQLGQSLGYTETETKTFVSLWSIWNFLGR 383

BLAST of Csa1G008460.1 vs. TrEMBL
Match: A0A151S7C4_CAJCA (Putative transporter MCH1 OS=Cajanus cajan GN=KK1_027511 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-19
Identity = 46/90 (51.11%), Postives = 68/90 (75.56%), Query Frame = 1

Query: 8   DPTEYHCVPSEE---KINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLAVTDN 67
           D  EYH +PS+E   ++  + ++ ++ E NI++++ TV+FW+LF TM  G+GSGLA  +N
Sbjct: 309 DEVEYHELPSDEGQVQVTSDDVLPREEEKNILQAMCTVDFWMLFVTMISGLGSGLATINN 368

Query: 68  MNQLSQSLGYRTVQINTFVSLWSIWNFLGR 95
           M+Q+ QSLGY T++IN  VSLWS+WNFLGR
Sbjct: 369 MSQIGQSLGYSTIEINNMVSLWSMWNFLGR 398

BLAST of Csa1G008460.1 vs. TrEMBL
Match: A0A151S7C4_CAJCA (Putative transporter MCH1 OS=Cajanus cajan GN=KK1_027511 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1

Query: 33   MNIIESIGTVNFWLLFFTMTWGMGSGLAVTDNMNQLSQSLGYRTVQINTFVSLWSIWNFL 92
            +N+++++ TVNFW++F +   GMGSGLA  +N+ Q+ +SLGY + +  + VSLWSIWNFL
Sbjct: 946  LNLLQAMQTVNFWIMFISTACGMGSGLATVNNLGQIGESLGYTSHETGSLVSLWSIWNFL 1005

Query: 93   GRLESAMPLIFSSGNLMALSRYQRP 118
            GR  +     + S   +   R+ RP
Sbjct: 1006 GRFGAG----YVSDYYLHTRRWARP 1026


HSP 2 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1

Query: 2   KLQITDDPTEYHCVPSEEKIN----DELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGS 61
           K   + D   YH +P EE       D+  +  + +MNI++S+ T+NFWLLF  M  GMGS
Sbjct: 162 KFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGS 221

Query: 62  GLAVTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRP 121
           GLA  +N++Q+ +SLGY T  IN+ VSLWSIWNFLGR        + S  ++    ++RP
Sbjct: 222 GLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGG----YVSDIVLHRMGWERP 281

BLAST of Csa1G008460.1 vs. TrEMBL
Match: A0A067GBJ1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008597mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1

Query: 2   KLQITDDPTEYHCVPSEEKIN----DELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGS 61
           K   + D   YH +P EE       D+  +  + +MNI++S+ T+NFWLLF  M  GMGS
Sbjct: 162 KFSASQDSVAYHELPGEESQVKAEFDDKKLKDEEDMNILQSVCTLNFWLLFVAMLCGMGS 221

Query: 62  GLAVTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRP 121
           GLA  +N++Q+ +SLGY T  IN+ VSLWSIWNFLGR        + S  ++    ++RP
Sbjct: 222 GLATVNNISQIGESLGYPTSAINSLVSLWSIWNFLGRFGGG----YVSDIVLHRMGWERP 281

BLAST of Csa1G008460.1 vs. TAIR10
Match: AT2G34350.1 (AT2G34350.1 Nodulin-like / Major Facilitator Superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-19
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 1

Query: 10  TEYHCVPSEEKIND--ELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLAVTDNMNQ 69
           TE   +    K+N   ++  V   +MN++E+I T NFWLLF  M  GMGSGLA  +N+ Q
Sbjct: 281 TERTTLLDSPKLNSSSDVKDVMTNDMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQ 340

Query: 70  LSQSLGYRTVQINTFVSLWSIWNFLGRLES 98
           + +SL Y TVQ+N+ VSLWSIWNFLGR  S
Sbjct: 341 MGESLRYSTVQLNSLVSLWSIWNFLGRFGS 370

BLAST of Csa1G008460.1 vs. TAIR10
Match: AT2G34355.1 (AT2G34355.1 Major facilitator superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-18
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1

Query: 32  EMNIIESIGTVNFWLLFFTMTWGMGSGLAVTDNMNQLSQSLGYRTVQINTFVSLWSIWNF 91
           + NI+E++ TVNFWLLF  M  GMGSG A  +NM Q+ +SL Y +VQ+N+ VSLWSIWNF
Sbjct: 303 DSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLNSLVSLWSIWNF 362

Query: 92  LGR 95
           LGR
Sbjct: 363 LGR 365

BLAST of Csa1G008460.1 vs. TAIR10
Match: AT1G18940.1 (AT1G18940.1 Nodulin-like / Major Facilitator Superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16
Identity = 32/70 (45.71%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 25  LMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLAVTDNMNQLSQSLGYRTVQINTFVS 84
           LM+ +D+ +N+++++  V+FWLLF  M  GMGSG++  +N+ Q+ +SL Y +V+IN+ ++
Sbjct: 298 LMLDEDKSLNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLA 357

Query: 85  LWSIWNFLGR 95
           LW+IWNF+GR
Sbjct: 358 LWNIWNFIGR 367

BLAST of Csa1G008460.1 vs. TAIR10
Match: AT1G74780.1 (AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein)

HSP 1 Score: 80.5 bits (197), Expect = 8.0e-16
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 1

Query: 33  MNIIESIGTVNFWLLFFTMTWGMGSGLAVTDNMNQLSQSLGYRTVQINTFVSLWSIWNFL 92
           +N+++++  ++FWLLF  M  GMGSGL+  +N+ Q+ +SL Y +V+IN+ VSLWSIWNFL
Sbjct: 313 LNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWNFL 372

Query: 93  GRLESAMPLIFSSGNLMALSRYQRP 118
           GR  +     ++S  L+    + RP
Sbjct: 373 GRFGAG----YASDALLHKKGWPRP 393

BLAST of Csa1G008460.1 vs. TAIR10
Match: AT3G01930.2 (AT3G01930.2 Major facilitator superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 6.4e-13
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1

Query: 29  KDREMNIIESIGTVNFWLLFFTMTWGMGSGLAVTDNMNQLSQSLGYRTVQINTFVSLWSI 88
           +  +  + +++   +FWL+FF++  G GSGL V DN+ Q+SQSLGY    +  FVS+ SI
Sbjct: 354 RGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--FVSMISI 413

Query: 89  WNFLGRLESAMPLIFSSGNLMALSRYQRPSAIS 122
           WNFLGR+       + S  ++    Y RP AI+
Sbjct: 414 WNFLGRIGGG----YFSELIVRDYAYPRPVAIA 440

BLAST of Csa1G008460.1 vs. NCBI nr
Match: gi|700208543|gb|KGN63639.1| (hypothetical protein Csa_1G008460 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 4.8e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1

Query: 1   MKLQITDDPTEYHCVPSEEKINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLA 60
           MKLQITDDPTEYHCVPSEEKINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLA
Sbjct: 1   MKLQITDDPTEYHCVPSEEKINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLA 60

Query: 61  VTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRPSAI 120
           VTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRPSAI
Sbjct: 61  VTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGRLESAMPLIFSSGNLMALSRYQRPSAI 120

Query: 121 SS 123
           SS
Sbjct: 121 SS 122

BLAST of Csa1G008460.1 vs. NCBI nr
Match: gi|659105754|ref|XP_008453166.1| (PREDICTED: uncharacterized protein LOC103493962 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1

Query: 7   DDPTEYHCVPSEEKINDELMIVKD----REMNIIESIGTVNFWLLFFTMTWGMGSGLAVT 66
           +D  EYH +P EE   D++M+V +    + MN++E+I T+NFWLLF  M  GMGSGLA  
Sbjct: 295 EDSVEYHELPREE---DQIMVVSNSRAPQPMNVLEAIRTINFWLLFLAMVCGMGSGLATI 354

Query: 67  DNMNQLSQSLGYRTVQINTFVSLWSIWNFLGR 95
           +NM+QL QSLGY   +  TFVSLWSIWNFLGR
Sbjct: 355 NNMSQLGQSLGYTATETKTFVSLWSIWNFLGR 383

BLAST of Csa1G008460.1 vs. NCBI nr
Match: gi|778655863|ref|XP_011659929.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-20
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1

Query: 7   DDPTEYHCVPSEEKINDELMIVKD----REMNIIESIGTVNFWLLFFTMTWGMGSGLAVT 66
           +D  EYH +P EE   +++M+V +    + MN++E+I T+NFWLLF  M  GMGSGLA  
Sbjct: 295 EDSVEYHELPREE---NQIMVVSNTRAPQTMNVLEAIRTINFWLLFLAMVCGMGSGLATI 354

Query: 67  DNMNQLSQSLGYRTVQINTFVSLWSIWNFLGR 95
           +NM+QL QSLGY   +  TFVSLWSIWNFLGR
Sbjct: 355 NNMSQLGQSLGYTETETKTFVSLWSIWNFLGR 383

BLAST of Csa1G008460.1 vs. NCBI nr
Match: gi|1009181900|ref|XP_015872421.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Ziziphus jujuba])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 48/99 (48.48%), Postives = 71/99 (71.72%), Query Frame = 1

Query: 2   KLQITDDPTEYHCVPSEEK------INDELMIVKDREMNIIESIGTVNFWLLFFTMTWGM 61
           K+   + P+EY  + S +        +D+ M+ K+ ++ +++++ T+NFWLLF  M  GM
Sbjct: 226 KISAAEYPSEYEELASGDHEIQVKVSSDDEMLAKEEDLTVLQAMSTLNFWLLFIAMVCGM 285

Query: 62  GSGLAVTDNMNQLSQSLGYRTVQINTFVSLWSIWNFLGR 95
           GSGLA  +NM+QL QSLGY+TV+I++FVSLWSIWNFLGR
Sbjct: 286 GSGLATINNMSQLGQSLGYKTVEISSFVSLWSIWNFLGR 324

BLAST of Csa1G008460.1 vs. NCBI nr
Match: gi|1012339462|gb|KYP50694.1| (putative transporter MCH1 [Cajanus cajan])

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19
Identity = 46/90 (51.11%), Postives = 68/90 (75.56%), Query Frame = 1

Query: 8   DPTEYHCVPSEE---KINDELMIVKDREMNIIESIGTVNFWLLFFTMTWGMGSGLAVTDN 67
           D  EYH +PS+E   ++  + ++ ++ E NI++++ TV+FW+LF TM  G+GSGLA  +N
Sbjct: 309 DEVEYHELPSDEGQVQVTSDDVLPREEEKNILQAMCTVDFWMLFVTMISGLGSGLATINN 368

Query: 68  MNQLSQSLGYRTVQINTFVSLWSIWNFLGR 95
           M+Q+ QSLGY T++IN  VSLWS+WNFLGR
Sbjct: 369 MSQIGQSLGYSTIEINNMVSLWSMWNFLGR 398

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LRL3_CUCSA3.4e-63100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008460 PE=4 SV=1[more]
A0A0A0LUE8_CUCSA4.6e-2055.43Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008470 PE=4 SV=1[more]
A0A151S7C4_CAJCA2.3e-1951.11Putative transporter MCH1 OS=Cajanus cajan GN=KK1_027511 PE=4 SV=1[more]
A0A151S7C4_CAJCA1.6e-1242.35Putative transporter MCH1 OS=Cajanus cajan GN=KK1_027511 PE=4 SV=1[more]
A0A067GBJ1_CITSI1.5e-1842.74Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008597mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G34350.12.0e-1951.11 Nodulin-like / Major Facilitator Superfamily protein[more]
AT2G34355.11.7e-1861.90 Major facilitator superfamily protein[more]
AT1G18940.12.1e-1645.71 Nodulin-like / Major Facilitator Superfamily protein[more]
AT1G74780.18.0e-1643.53 Nodulin-like / Major Facilitator Superfamily protein[more]
AT3G01930.26.4e-1339.78 Major facilitator superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700208543|gb|KGN63639.1|4.8e-63100.00hypothetical protein Csa_1G008460 [Cucumis sativus][more]
gi|659105754|ref|XP_008453166.1|1.3e-2056.52PREDICTED: uncharacterized protein LOC103493962 [Cucumis melo][more]
gi|778655863|ref|XP_011659929.1|6.6e-2055.43PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis sativus][more]
gi|1009181900|ref|XP_015872421.1|1.1e-1948.48PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Ziziphus jujuba][more]
gi|1012339462|gb|KYP50694.1|3.3e-1951.11putative transporter MCH1 [Cajanus cajan][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G008460Csa1G008460gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G008460.1Csa1G008460.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G008460.1.cds1Csa1G008460.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G008460.1.utr5p1Csa1G008460.1.utr5p1five_prime_UTR


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21576UNCHARACTERIZED NODULIN-LIKE PROTEINcoord: 18..95
score: 1.9
NoneNo IPR availablePANTHERPTHR21576:SF33F14D16.8-RELATEDcoord: 18..95
score: 1.9