CSPI01G01980 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAATTGTTGCTTTGGAAGCTCTGTTTTATAGAATTCTGTCTTATGGTAAGCTCTACCGAGATGGATTCATATCTCCGCCTTCAATCTCCTCCTCATTCTTGCTTCCCCTCTCGTCATCCCAATCAGAACAAAAACAGAGGAATCTGTTTTCAAAATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGCTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCATCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGGATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAATGACCGTCGGCCATATCATCGTAGTTTTAGGATTTCGTG ATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGCTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCATCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGGATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAATGA ATGAAACTTCAAATTACCGATGACCCCACTGAATATCACTGCGTTCCTAGTGAGGAAAAGATCAATGATGAGCTAATGATTGTGAAAGATAGAGAAATGAATATAATCGAGTCAATCGGCACAGTGAACTTCTGGCTATTGTTTTTCACGATGACGTGGGGAATGGGATCTGGGTTAGCCATCACAGACAACATGAACCAACTCAGCCAGTCTTTAGGATACAGAACAGTCCAGATCAACACCTTCGTTTCACTTTGGAGCATTTGGAATTTCCTTGGTCGTTTGGGATCTGCTATGCCTCTGATCTTCTCCTCTGGAAATTTAATGGCCTTGTCTCGTTACCAATGA
BLAST of CSPI01G01980 vs. TrEMBL
Match: A0A0A0LRL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008460 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 2.4e-58 Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 1
BLAST of CSPI01G01980 vs. TrEMBL
Match: A0A0A0LUE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G008470 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 3.3e-20 Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
BLAST of CSPI01G01980 vs. TrEMBL
Match: A0A151S7C4_CAJCA (Putative transporter MCH1 OS=Cajanus cajan GN=KK1_027511 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 2.2e-19 Identity = 47/92 (51.09%), Postives = 69/92 (75.00%), Query Frame = 1
BLAST of CSPI01G01980 vs. TrEMBL
Match: W9QUU6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006405 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18 Identity = 49/97 (50.52%), Postives = 71/97 (73.20%), Query Frame = 1
BLAST of CSPI01G01980 vs. TrEMBL
Match: M5WCQ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003974mg PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18 Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1
BLAST of CSPI01G01980 vs. TAIR10
Match: AT2G34350.1 (AT2G34350.1 Nodulin-like / Major Facilitator Superfamily protein) HSP 1 Score: 93.6 bits (231), Expect = 8.6e-20 Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 1
BLAST of CSPI01G01980 vs. TAIR10
Match: AT2G34355.1 (AT2G34355.1 Major facilitator superfamily protein) HSP 1 Score: 90.1 bits (222), Expect = 9.6e-19 Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
BLAST of CSPI01G01980 vs. TAIR10
Match: AT1G18940.1 (AT1G18940.1 Nodulin-like / Major Facilitator Superfamily protein) HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16 Identity = 33/72 (45.83%), Postives = 56/72 (77.78%), Query Frame = 1
BLAST of CSPI01G01980 vs. TAIR10
Match: AT1G74780.1 (AT1G74780.1 Nodulin-like / Major Facilitator Superfamily protein) HSP 1 Score: 80.1 bits (196), Expect = 9.9e-16 Identity = 34/65 (52.31%), Postives = 51/65 (78.46%), Query Frame = 1
BLAST of CSPI01G01980 vs. TAIR10
Match: AT3G01930.2 (AT3G01930.2 Major facilitator superfamily protein) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12 Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1
BLAST of CSPI01G01980 vs. NCBI nr
Match: gi|700208543|gb|KGN63639.1| (hypothetical protein Csa_1G008460 [Cucumis sativus]) HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58 Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 1
BLAST of CSPI01G01980 vs. NCBI nr
Match: gi|659105754|ref|XP_008453166.1| (PREDICTED: uncharacterized protein LOC103493962 [Cucumis melo]) HSP 1 Score: 108.2 bits (269), Expect = 9.6e-21 Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1
BLAST of CSPI01G01980 vs. NCBI nr
Match: gi|778655863|ref|XP_011659929.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis sativus]) HSP 1 Score: 105.9 bits (263), Expect = 4.8e-20 Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
BLAST of CSPI01G01980 vs. NCBI nr
Match: gi|1009181900|ref|XP_015872421.1| (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Ziziphus jujuba]) HSP 1 Score: 105.5 bits (262), Expect = 6.2e-20 Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = 1
BLAST of CSPI01G01980 vs. NCBI nr
Match: gi|1012339462|gb|KYP50694.1| (putative transporter MCH1 [Cajanus cajan]) HSP 1 Score: 103.2 bits (256), Expect = 3.1e-19 Identity = 47/92 (51.09%), Postives = 69/92 (75.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |