Csa1G004330 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G004330
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProbable exosome complex exonuclease 2; contains IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)
LocationChr1 : 795370 .. 798296 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGTATAATATAAACAGGGTAGTAATTATGCTTTCGTTGGTTCTTGCCCTTTTTGTGGTTTAATTTCACAATGCTCTTATGTGTAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGTATGAAATGTTGAGCTTCTTTCTCTTTGAACTATGCTATTCACTACATTTTTACAGTGTCATGCTCCTGGTTTTTATTTATTTTTGTTTCTTTTCTTCCTTTGGGAAACTTTAAACGTTTATTTGGTATGATAATGACTACTTAGATGTGTTGAAGTGCAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGTGGGGTACCTTGTTTTTCATTTTTTGTAATACATTTTGTTCATCCGTGTTTTGTACAATTTCCCGTGAATGGTTTGGTTTAGAAATTGATGTTTTCTTGGAAGCCGTCGTAATTTCATTTCATTTTATGTTGGAGAATAGGAGGTAATAATAAGTGAAAAATGAATAGTTGGGCATCAACAACTAGTTGGATATTTACTAGATAGTTGTTGAGAAAATGAAATTGATAGAAAAATATTGCAGTAGCAATAATTTGGGGTGAAAGAAACAATAGGCTTTTTAGGTGGATTGAGAAGTCTTAGGTCAGGTGTAATCCTTTGTTACATTTCAATCATCTCTCTAGGTTTTCACATGTAGGTCCTCTCTAGGATTTCATTTGTTCTCAATGAAAGGGTAGCTCTCCATCAATCTGGTATCCATTGCTTTAAGTCGTAGCCTTTTTTCTTTTTCATATGTACCTTTTGCTGTGCTTGTAATATTTGGGTTTTCATTGAATATAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGTTTGACTCGTGATTAGAAAAACAGATCAATCATATTTGCTTCCCTTGTTTGGATCAGTAACCTTTTCACTTGCTGACAAGTGTGTTTTTGTTGCCTTAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGTATATTTTCATTGTTGACTTTTGTCTACACTTCTCTTCTGTATCATTTGTTAACTTTAATAAACAAATTTTGTGCTTAATTATTTACTTTTGTCTACACTTCTCTTTTGTATCATTTACACTTTACAAGGCAGCACGACCATATAACCTTTGCTTCTTTGACCAAACTAATGTCCAATAAACACATTTTTTATTGAGCAAAGTCAAGCTTTAAGCCTATATTTGTCTCATTCAATTTTGAAATCTTTGCTATGCCATTTGCATATCAAAGGGATAAAACAAGAAATTTCCTAGTGAGAGTTGGCTAGTGGGATGAATTGATATGCAACTGAGGGGAACGACTAACGAGTATGGTTATATAGGCAGTGTTTACATGGGGAATGTTTTTTGTGGGACTTTTTGGATTTTCGTCTGGTAGGGAGAGGTTACCAGCCCCATTGTGAAAAAGTTTGTTAGGCTAGTGTTGCCGTGTCTCTATTTGTTTGTTACTAAAAGTATATATTTTTAAAAACTATATAATTTTTATGAAAAAAAAATTCAAATAAATGAGTTGATGCATTTATATGCTTGAAAAATTTAGTTTGATATATTTCACACTCAATTTATTATAATTGTCATATATGTATCTTTTCAGTCTGTTCTACCCAGCAAGTGTATATGTATGTATAATACCTTACTAATATTAGTATTAATATGAAAGAGTTGCCTGAAGGCTTGCCTTTGAGTACAAAGAGCTTAACCTCCCATTTCTCAAGACTACTTGCTAATTACCAAAAGCCTGCCCTAACTATCATCATCTTATTCAATACATAGATTGACCACTCCTCACTTCCATACAACCTTGTGGTCCTCACCATAACTAACTTTTACTTGTACTACTCTTTTTACCTCTTCTCGAATGTTTCACTAGAATTGGAGCCCTAAGCCCCTAACAATGTATTTAGCACATATAATACTAACAAGTGTCCAAGTCCGTGTCATGACAAGAGCATGCTAGTCAAACTAAAGTGTTCACGCTTATCAGGGTAGAGGTTACCACCTTGCTCATGTAAAAAGGCTGATATTCTAATGTTGATGTATTGGTTATCTTTGTTGTTTTTTTTTCTTTCTATTTTTCTTGAAGAAGTACAGGGATTAATTTAAAATTGAATATGATACTTTACTTAATTTTTTAATACTTCCGAAAGAAACTAATAAAACTTCAAATTGTTCTTCCCAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

mRNA sequence

ATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

Coding sequence (CDS)

ATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

Protein sequence

MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE*
Homology
[Close]
BLAST of Csa1G004330 vs. Swiss-Prot
Match: EXOS7_HUMAN (Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 205.3 bits (521), Expect = 9.0e-52
Identity = 111/283 (39.22%), Postives = 172/283 (60.78%), Query Frame = 1 

Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + +ETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+G P   +P++G +   VDCS +A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           +DL +L +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +  +  
Sbjct: 124 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLED--EEG 183

Query: 182 QPEVDVSDEEF--LQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 241
             ++++SD+ +  ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +
Sbjct: 184 SKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVV 243

Query: 242 CGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEA 283
             + K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 244 TCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

[Close]
BLAST of Csa1G004330 vs. Swiss-Prot
Match: EXOS7_MOUSE (Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-50
Identity = 110/276 (39.86%), Postives = 167/276 (60.51%), Query Frame = 1 

Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + +ETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           +DL SL +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +  +  
Sbjct: 124 VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLED--EEG 183

Query: 182 QPEVDVSDEEF--LQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 241
             ++++SD+ +  ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +
Sbjct: 184 AKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVV 243

Query: 242 CGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDS 276
             + K G   +DP  I +M+   K V + L   L S
Sbjct: 244 TCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272

[Close]
BLAST of Csa1G004330 vs. Swiss-Prot
Match: RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-34
Identity = 91/267 (34.08%), Postives = 149/267 (55.81%), Query Frame = 1 

Query: 12  IQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQ 71
           + A I    R DGR    +RPI +   VIS+ANGSA VR+G T+++  VK E+GRP P  
Sbjct: 14  VLAAIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDS 73

Query: 72  PDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVE 131
           P++G ++++ +  P A+P+FE    +E + ELS  ++R +   +      IDL  L + E
Sbjct: 74  PNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEE 133

Query: 132 GKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEE 191
           G+ CW  +++  V+  +GNL DA      +ALS T +PK    AE +D+   EV+V +E+
Sbjct: 134 GEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPK----AEVVDD---EVEVMEED 193

Query: 192 FLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVD 251
                 +  P  VT+ KVG++ +VD  LEEE  M + +++++   G +C + K G +G  
Sbjct: 194 TEPLAINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDF 253

Query: 252 PSIIL-DMISVGKHVSEELLNKLDSEI 278
           P  +L D I +    +EE+   + +++
Sbjct: 254 PEHLLEDAIDLATKKAEEVRRTVKAQL 267

[Close]
BLAST of Csa1G004330 vs. Swiss-Prot
Match: RRP42_METTH (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rrp42 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.4e-34
Identity = 85/257 (33.07%), Postives = 132/257 (51.36%), Query Frame = 1 

Query: 21  RTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +R ISIET VIS+A GS+RV++G T++I  VK ++G P P  P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVEGKLCWDLYI 140
            +  P A P FE    +E S ELS  ++RC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGV 200
           +  ++  +GNL DA   A  AAL +T IP   V       E  EV ++ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILDMIS 260
             + T  K+G   ++D +LEEE  +++ +SI +   G IC + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEELLNKLDSEI 278
           +      +L+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]
BLAST of Csa1G004330 vs. Swiss-Prot
Match: RRP42_THEGJ (Exosome complex component Rrp42 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-32
Identity = 92/267 (34.46%), Postives = 136/267 (50.94%), Query Frame = 1 

Query: 12  IQAGIAQDL---------RTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKA 71
           I AGI +D          R DGR    YR I I+T  I +A GSA VR+GGT V+  +K 
Sbjct: 6   IMAGIMRDRILNLLKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKV 65

Query: 72  ELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGI 131
           ++G P P  PD+G ++ +V+  P A P FE    +E + EL+  ++R +   ++     +
Sbjct: 66  DVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQA-----V 125

Query: 132 DLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQ 191
           +L  L++V GKL   ++I+  V+  +GNL DA G A  AAL  T IPKV        NE+
Sbjct: 126 ELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEY------NEE 185

Query: 192 PEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGL 251
               +  +E+       VP  VT  K+G   IVD  L+EE+ M S ++I+ D  GHI  +
Sbjct: 186 TGEIIKLDEYEPLPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAV 245

Query: 252 TKRGGVGVDPSIILDMISVGKHVSEEL 270
            K  G       ++  I      ++EL
Sbjct: 246 QKGEGGSFKLEEVMYAIDTALKKADEL 261

[Close]
BLAST of Csa1G004330 vs. TrEMBL
Match: V4UA38_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016158mg PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 2.2e-129
Identity = 237/286 (82.87%), Postives = 260/286 (90.91%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FI+ GIAQDLR+DGR R TYRPI +ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSEGEKEFIKGGIAQDLRSDGRKRYTYRPIYVETGVIPQANGSARVRMGSTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP VHVAAEA  +
Sbjct: 121 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVSISI+R GHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           G+ KRGGVG+DPS+ILDMISV   VS +L++KLDSEI AAEADEEE
Sbjct: 241 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAEADEEE 286

[Close]
BLAST of Csa1G004330 vs. TrEMBL
Match: A0A151RLB1_CAJCA (Exosome complex exonuclease RRP42 OS=Cajanus cajan GN=KK1_035204 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 8.2e-129
Identity = 234/285 (82.11%), Postives = 263/285 (92.28%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GE+ FIQ GIAQDLR DGR RLTYRPIS+ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSVGEQHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           K ELG+P+ +QPDKGKVSI +DCS TAEPAFEGRGG+EL+ ELSIAL+RCLLGGKSG+GA
Sbjct: 61  KPELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSIALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGK+CWDLYI+GLVVSS+GNLLDALGAAIKAALSNTGIP+V VAA   ++
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYIVDAT EEESQMSSAVSIS++RHGHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEE 286
           G+TKRGG G+DPSIILDMISV KHVSE+++NKLDSEI +AEA+EE
Sbjct: 241 GITKRGGAGLDPSIILDMISVAKHVSEQVINKLDSEIASAEAEEE 285

[Close]
BLAST of Csa1G004330 vs. TrEMBL
Match: A0A059BFR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02573 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 1.4e-128
Identity = 234/286 (81.82%), Postives = 264/286 (92.31%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLF+Q GIAQDLR+DGR RLTYRPI +ET VI QANGSARVRMGGT+VIA+V
Sbjct: 1   MNGLSLGEKLFVQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRMGGTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAE+GRP+P+QP+KGKVSI VDCSPTA P FEGRG EELSTELS+AL+RCLLGGKSG+GA
Sbjct: 61  KAEIGRPSPLQPNKGKVSIYVDCSPTAAPVFEGRGAEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGK+CWDLYI+GLVVSS+GNLLDALGAAIKAALSNTGIP+VHVAAEA   
Sbjct: 121 GIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVHVAAEASGE 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           +QPE+D+SDEEFLQFDTSGVP IVTLTKVG+HYIVDATL+EES+MSSA+S+SI+R G IC
Sbjct: 181 DQPELDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLDEESEMSSALSVSINRKGLIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG G+DPS+ILDMISV KHVSE+L ++LDSEI AAEA EEE
Sbjct: 241 GLTKRGGAGLDPSVILDMISVAKHVSEQLTDRLDSEISAAEAVEEE 286

[Close]
BLAST of Csa1G004330 vs. TrEMBL
Match: A0A061FPE8_THECC (3'-5'-exoribonuclease family protein isoform 2 OS=Theobroma cacao GN=TCM_043261 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.2e-127
Identity = 229/286 (80.07%), Postives = 264/286 (92.31%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQ GIAQDLR+DGR RLTYRPI +ET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELG+P+ +QPDKGK++I VDCSPTA P FEGRGGEELSTELS+AL+RCLLGGKSGSG+
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGSGS 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GID SSL++VEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIPKV+VA+E   +
Sbjct: 121 GIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASETSGD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEV++SDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQ+SSA+SISI+R GHIC
Sbjct: 181 EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG G+DPSIILDMISV KHVSE+L+NKLDSEI AAEA+EEE
Sbjct: 241 GLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 286

[Close]
BLAST of Csa1G004330 vs. TrEMBL
Match: A0A0B0PWL1_GOSAR (Exosome complex component RRP42 OS=Gossypium arboreum GN=F383_08846 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 2.0e-127
Identity = 231/286 (80.77%), Postives = 261/286 (91.26%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQ GIAQDLR+DGR RLTYRPI +ET VI QA+GSARVR+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARVRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELG+P+ +QPDKGK++I VDCSPTA P FEGRGGEELSTELS+AL+RCLLGGKSG+GA
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GID +SL+VVEGK+CWDLYI+GLV+SS+GNLLDAL AAIKAALSNTGIPKV VA E   +
Sbjct: 121 GIDPTSLVVVEGKVCWDLYIDGLVISSDGNLLDALAAAIKAALSNTGIPKVDVAVETRSD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEV++SDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQMSSAVSIS++R GHIC
Sbjct: 181 EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRKGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVG+DPSIILDMISV KHVSE+L+NKLDSEI AAEA EEE
Sbjct: 241 GLTKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEASEEE 286

[Close]
BLAST of Csa1G004330 vs. TAIR10
Match: AT3G07750.1 (AT3G07750.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 445.7 bits (1145), Expect = 2.2e-125
Identity = 219/285 (76.84%), Postives = 257/285 (90.18%), Query Frame = 1 

Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           +GLS GE+ FI+ GIAQDLRTDGR RLTYRPI +ET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+GRP+ +QPDKGKV++ +DCSPTAEP F GRGGEELS+EL++AL+RCLLGGKSG+GAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           I+LSSL++ EGK+CWDLYI+GLV+SS+GNLLDALGAAIKAAL+NT IPKV+V+AE  D+E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICG 241
           QPE+D+SDEE+LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSAVSIS++R GHICG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           LTKR G G+DPS+ILDMISV KHV+E L++KLDSEI AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]
BLAST of Csa1G004330 vs. TAIR10
Match: AT3G12990.1 (AT3G12990.1 ribonuclease PH45A)

HSP 1 Score: 119.0 bits (297), Expect = 4.8e-27
Identity = 81/257 (31.52%), Postives = 130/257 (50.58%), Query Frame = 1 

Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F+++ +  +LR DGRG   YR ++I+     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGID 123
           L +P   +P +G  SI  + SP A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V     DN Q 
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGG---DNSQD 190

Query: 184 EV--DVSDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 243
            +     + E L      +P   T      G   ++D T  EE+ M   ++++++ +G I
Sbjct: 191 VIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDI 250

Query: 244 CGLTKRGGVGVDPSIIL 257
           C + K G  GV+ S+IL
Sbjct: 251 CAIQKPGEEGVNQSVIL 256

[Close]
BLAST of Csa1G004330 vs. TAIR10
Match: AT3G60500.1 (AT3G60500.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-26
Identity = 84/258 (32.56%), Postives = 133/258 (51.55%), Query Frame = 1 

Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGRG   YR ++I+     +  GS+ V++G T V+  V A+
Sbjct: 11  LTVNESKFVETALQSELRVDGRGLYDYRKLTIK---FGKEYGSSEVQLGQTHVMGFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFE-GRGGEELSTELSIALERCLLGGKSGSGAGI 123
           L +P   +P++G +SI  + SP A+P+FE GR GE  + EL   ++R L   ++     +
Sbjct: 71  LVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDRGLRESRA-----V 130

Query: 124 DLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQ 183
           D  SL V+ GK+ W + I+  ++ + GNL+DA   A  AAL     P   V  E   N Q
Sbjct: 131 DTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGE---NGQ 190

Query: 184 PEV--DVSDEEFLQFDTSGVPAIVTLTKVGKHYIV--DATLEEESQMSSAVSISIDRHGH 243
             +   + + E L      +P   T     K  IV  D T  EE+ M   ++++++ +G 
Sbjct: 191 EVIIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 ICGLTKRGGVGVDPSIIL 257
           IC + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]
BLAST of Csa1G004330 vs. TAIR10
Match: AT1G60080.1 (AT1G60080.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 94.7 bits (234), Expect = 9.6e-20
Identity = 72/275 (26.18%), Postives = 122/275 (44.36%), Query Frame = 1 

Query: 11  FIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPM 70
           F +  +++ LR DGR     R   +   ++S A+GSA  ++G T ++A ++ E+  P+  
Sbjct: 27  FFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPSTD 86

Query: 71  QPDKGKVSISVD----CSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSS 130
            PD+G ++I       CSPT  P         +S  LS  +          S   IDL  
Sbjct: 87  SPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTIL---------SSGMIDLKE 146

Query: 131 LIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKV------HVAAEALDN 190
           L +V GK  W  Y++   + ++G L DA   A  AA SN  IP V       + A   + 
Sbjct: 147 LCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEK 206

Query: 191 EQPEVDVSDEEFL-----QFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDR 250
           +Q    ++++E +     +     +P  +T      + + D T EEES M + V++ +D 
Sbjct: 207 DQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDS 266

Query: 251 HGHICGLTKRGGVGVD-PSIILDMISVGKHVSEEL 270
              +    K GG  +   S I   + + +  ++EL
Sbjct: 267 SDQMVSFYKSGGAALAYSSAIKSCVELARKRAKEL 292

[Close]
BLAST of Csa1G004330 vs. NCBI nr
Match: gi|778655595|ref|XP_004151651.2| (PREDICTED: exosome complex component RRP42 [Cucumis sativus])

HSP 1 Score: 553.9 bits (1426), Expect = 1.6e-154
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]
BLAST of Csa1G004330 vs. NCBI nr
Match: gi|659081317|ref|XP_008441268.1| (PREDICTED: exosome complex component RRP42-like [Cucumis melo])

HSP 1 Score: 530.8 bits (1366), Expect = 1.5e-147
Identity = 272/286 (95.10%), Postives = 281/286 (98.25%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALSNTGIPKVH+AAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISI+RHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]
BLAST of Csa1G004330 vs. NCBI nr
Match: gi|568830399|ref|XP_006469488.1| (PREDICTED: exosome complex component RRP42 isoform X1 [Citrus sinensis])

HSP 1 Score: 469.9 bits (1208), Expect = 3.1e-129
Identity = 237/286 (82.87%), Postives = 260/286 (90.91%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FI+ GIAQDLR+DGR R TYRPI +ET VI QANGSARVRMG T+VIA+V
Sbjct: 8   MVGLSEGEKEFIKGGIAQDLRSDGRKRYTYRPIYVETGVIPQANGSARVRMGSTDVIASV 67

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+RCLLGGKSG+GA
Sbjct: 68  KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGA 127

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP VHVAAEA  +
Sbjct: 128 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 187

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVSISI+R GHIC
Sbjct: 188 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 247

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           G+ KRGGVG+DPS+ILDMISV   VS +L++KLDSEI AAEADEEE
Sbjct: 248 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAEADEEE 293

[Close]
BLAST of Csa1G004330 vs. NCBI nr
Match: gi|567910923|ref|XP_006447775.1| (hypothetical protein CICLE_v10016158mg [Citrus clementina])

HSP 1 Score: 469.9 bits (1208), Expect = 3.1e-129
Identity = 237/286 (82.87%), Postives = 260/286 (90.91%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FI+ GIAQDLR+DGR R TYRPI +ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSEGEKEFIKGGIAQDLRSDGRKRYTYRPIYVETGVIPQANGSARVRMGSTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP VHVAAEA  +
Sbjct: 121 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVSISI+R GHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           G+ KRGGVG+DPS+ILDMISV   VS +L++KLDSEI AAEADEEE
Sbjct: 241 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAEADEEE 286

[Close]
BLAST of Csa1G004330 vs. NCBI nr
Match: gi|1009164949|ref|XP_015900774.1| (PREDICTED: exosome complex component RRP42 [Ziziphus jujuba])

HSP 1 Score: 468.4 bits (1204), Expect = 9.1e-129
Identity = 236/286 (82.52%), Postives = 262/286 (91.61%), Query Frame = 1 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQ GIAQDLR+DGR RLTYRPI +ET VI QANGSARVR+G T+VIA+V
Sbjct: 1   MVGLSLGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELG+P+P+QPDKGKV+I VDCSPTA P FEGRGGEELS ELS+AL+RCLLGGKSG+GA
Sbjct: 61  KAELGKPHPLQPDKGKVAIYVDCSPTAAPIFEGRGGEELSMELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GI LSSL+VVEGK+CWDLYI+GLVVSS+GNLLDALGAAIKAALSNTGIP+V+VAA A  +
Sbjct: 121 GISLSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAAGASGD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           E+PEVDVSDEEFLQFDTSGVP I+TLTKVG+HYIVDAT EEESQMSSAVSIS++R GHIC
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATTEEESQMSSAVSISVNRQGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG GVDPSIILDMISV KHVSE+LLN+LDSEI AAEA E E
Sbjct: 241 GLTKRGGAGVDPSIILDMISVAKHVSEQLLNQLDSEIAAAEARENE 286

The following BLAST results are available for this feature:
BLAST of Csa1G004330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXOS7_HUMAN9.0e-5239.22Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3[more]
EXOS7_MOUSE1.3e-5039.86Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2[more]
RRP42_METKA1.7e-3434.08Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324... [more]
RRP42_METTH8.4e-3433.07Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai... [more]
RRP42_THEGJ2.1e-3234.46Exosome complex component Rrp42 OS=Thermococcus gammatolerans (strain DSM 15229 ... [more]
BLAST of Csa1G004330 vs. TrEMBL
Match NameE-valueIdentityDescription
V4UA38_9ROSI2.2e-12982.87Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016158mg PE=4 SV=1[more]
A0A151RLB1_CAJCA8.2e-12982.11Exosome complex exonuclease RRP42 OS=Cajanus cajan GN=KK1_035204 PE=4 SV=1[more]
A0A059BFR0_EUCGR1.4e-12881.82Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02573 PE=4 SV=1[more]
A0A061FPE8_THECC1.2e-12780.073'-5'-exoribonuclease family protein isoform 2 OS=Theobroma cacao GN=TCM_043261 ... [more]
A0A0B0PWL1_GOSAR2.0e-12780.77Exosome complex component RRP42 OS=Gossypium arboreum GN=F383_08846 PE=4 SV=1[more]
BLAST of Csa1G004330 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07750.12.2e-12576.84 3'-5'-exoribonuclease family protein[more]
AT3G12990.14.8e-2731.52 ribonuclease PH45A[more]
AT3G60500.11.8e-2632.56 3'-5'-exoribonuclease family protein[more]
AT1G60080.19.6e-2026.18 3'-5'-exoribonuclease family protein[more]
BLAST of Csa1G004330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778655595|ref|XP_004151651.2|1.6e-154100.00PREDICTED: exosome complex component RRP42 [Cucumis sativus][more]
gi|659081317|ref|XP_008441268.1|1.5e-14795.10PREDICTED: exosome complex component RRP42-like [Cucumis melo][more]
gi|568830399|ref|XP_006469488.1|3.1e-12982.87PREDICTED: exosome complex component RRP42 isoform X1 [Citrus sinensis][more]
gi|567910923|ref|XP_006447775.1|3.1e-12982.87hypothetical protein CICLE_v10016158mg [Citrus clementina][more]
gi|1009164949|ref|XP_015900774.1|9.1e-12982.52PREDICTED: exosome complex component RRP42 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR015847ExoRNase_PH_dom2
IPR020568Ribosomal_S5_D2-typ_fold
IPR027408PNPase/RNase_PH_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0001510 RNA methylation
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU111275cucumber EST collection version 3.0transcribed_cluster
CU174541cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G004330.1Csa1G004330.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU174541CU174541transcribed_cluster
CU111275CU111275transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 30..169
score: 6.0
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 200..263
score: 4.
IPR015847Exoribonuclease, phosphorolytic domain 2unknownSSF55666Ribonuclease PH domain 2-likecoord: 196..279
score: 1.66
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 209..223
score: 6.07E-45coord: 4..174
score: 6.07
IPR027408PNPase/RNase PH domainGENE3DG3DSA:3.30.230.70coord: 10..275
score: 9.
NoneNo IPR availableunknownCoilCoilcoord: 270..286
scor
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 1..286
score: 2.8E
NoneNo IPR availablePANTHERPTHR11097:SF8EXOSOME COMPLEX COMPONENT RRP42coord: 1..286
score: 2.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G004330CSPI01G01260Wild cucumber (PI 183967)cpicuB000
Csa1G004330Cucsa.196750Cucumber (Gy14) v1cgycuB299
Csa1G004330CsGy1G001330Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G004330Cucumber (Chinese Long) v2cucuB001
Csa1G004330Watermelon (97103) v1cuwmB094
Csa1G004330Cucumber (Gy14) v1cgycuB107
Csa1G004330Cucumber (Gy14) v1cgycuB475
Csa1G004330Cucurbita maxima (Rimu)cmacuB048
Csa1G004330Cucurbita maxima (Rimu)cmacuB086
Csa1G004330Cucurbita maxima (Rimu)cmacuB209
Csa1G004330Cucurbita maxima (Rimu)cmacuB402
Csa1G004330Cucurbita moschata (Rifu)cmocuB076
Csa1G004330Cucurbita moschata (Rifu)cmocuB037
Csa1G004330Cucurbita moschata (Rifu)cmocuB194
Csa1G004330Cucurbita moschata (Rifu)cmocuB390
Csa1G004330Melon (DHL92) v3.5.1cumeB019
Csa1G004330Melon (DHL92) v3.5.1cumeB054
Csa1G004330Watermelon (Charleston Gray)cuwcgB002
Csa1G004330Watermelon (Charleston Gray)cuwcgB005
Csa1G004330Watermelon (Charleston Gray)cuwcgB026
Csa1G004330Watermelon (Charleston Gray)cuwcgB081
Csa1G004330Watermelon (97103) v1cuwmB005
Csa1G004330Watermelon (97103) v1cuwmB002
Csa1G004330Watermelon (97103) v1cuwmB037
Csa1G004330Cucurbita pepo (Zucchini)cpecuB025
Csa1G004330Cucurbita pepo (Zucchini)cpecuB361
Csa1G004330Cucurbita pepo (Zucchini)cpecuB520
Csa1G004330Cucurbita pepo (Zucchini)cpecuB653
Csa1G004330Bottle gourd (USVL1VR-Ls)culsiB070
Csa1G004330Bottle gourd (USVL1VR-Ls)culsiB035
Csa1G004330Bottle gourd (USVL1VR-Ls)culsiB045
Csa1G004330Cucumber (Gy14) v2cgybcuB011
Csa1G004330Cucumber (Gy14) v2cgybcuB098
Csa1G004330Melon (DHL92) v3.6.1cumedB014
Csa1G004330Melon (DHL92) v3.6.1cumedB046
Csa1G004330Silver-seed gourdcarcuB0391
Csa1G004330Silver-seed gourdcarcuB1018
Csa1G004330Silver-seed gourdcarcuB1062
Csa1G004330Watermelon (97103) v2cuwmbB013
Csa1G004330Watermelon (97103) v2cuwmbB078
Csa1G004330Watermelon (97103) v2cuwmbB090
Csa1G004330Wax gourdcuwgoB007
Csa1G004330Wax gourdcuwgoB059
Csa1G004330Wax gourdcuwgoB070
Csa1G004330Wax gourdcuwgoB095