CsGy1G001330 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G001330
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionexosome complex component RRP42-like
LocationChr1 : 789626 .. 796254 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGCATTGTATAAAGTTTGGATTCTTCATCCCACGTTGTAAAAAAGAAACAAAAAGTGTAAATGACAGGACAATGGGTGGCTTCTGCACCTCAAATTTCCATGGTTACATTTCATTCAGCTGATGGCTTGAATTGAATTCAAGCAGTCAGTAGCTTTCTAAAGGAAGAGGCAAGTGATCTTTAACTTCATCCACTTTCATAAAGTCAATTACACGAGTCTCTATTCACAAAAATAACCTGAAATTCATTCATACTCCACACCTGGAGCCACACCCTTTTTTCTTCAACTCTATCTACGATCTCATAGATCTGGTCTGTTTGGATTCTTTCCCTTTTCCCTTTTTGCTGTAGAGATTGGATTAGCTTCTTGCATTTTAGATTCCTACTTTATGGGTTTTCGATATTTTTAGGGGTTCTTCTAATTGGTAGTTTAAATTGTAGCTGACGGTAGAGTTTCTTTTCTTGGTGATTTGTTTTCTGTTAAAATTTTCAGTATGGAAGAACCCAATGAAGCTGGACATGAGAGTACTACAGATAAGTCAAATTATTGATATGGGTATCCAAGTTCATTCATTACTGAACACCAATGGTTTTACGTTCCTTCAGGTCAAGTTAGGATATGAAATCTAGTCGGAGAACATTTTATAACAACTTGGGAAAACAATGTAGATAACCATTGTCTTTTTTTCTAGAAGATGGAAATAAGCTTGTTTGTTGAAATGATACTAACACTCTAGAGATAATAAAGGAAACAAAACAGAAATAACCAACAAACAAAATCAAGTATGTTGCAGATACTTAGTAAGAGATTACAAGCTATCTATTTGAAGAAGAAAATAAAATGACTTCAATTTAAACTGATGTCTTGAATTGAATAGTCTATAAAAGTTTGAAAAGACGGCACGGAGAGAAGGTTTTAACTTGAGTAATCTCTTAAGAAACTTTTTTGCTCGCGGTAGTATCTCTATGGTTAGCATTTGATGGAGCTTTGTTTACATTTTCACTCGGATATACGAAATTGCATTTGTGGGGTTGATCGCAATAAAAATGGACGTTTACTGTTAGAATTTGACAGAAATGGAATGTTGATTACTATTATGTAATGTAACATGCTCATAAGGATGCATAATGCCTTCCCACTAGATTTTGGAGATGTAACTAGACATAAGGCATATGGGTAATGTGTGTAATGCTGATTAATGCCTACAGACGAATGTATATTCTATTTCTTAAACTTATATATATTCTTCTTATGGATGCTTCCAAGAAGGGGACGTGGCCCGAACTTCAATACTTAGTTGTGGCTTTAAATCTTCAAATTGGTAAAGCTCATCTCATTCTTCTACCATGGAAGGACCTTGAAGGCATAAATAGACTATGGTCGCCCTTGTAGTCCTAGTAAACTTGTGAAGGAATCTTTAAGATAGAATATATGTTGTTCATTCGTGAAGCTTCTATGTTATCATTTCTCATTGAATACTGCGAAAATCTCTACCATGTTATCCTTTAGAAAAACTAATGGATTCTTGTGAATGTCTATTTCTTTTCTTGCATTTTAAGGGATTCATTACAATTACAACATCCTCCAGCCTTTTATCATGGAGTCAGAGAATGAAGTTGAAGCCATGTATAGAGACTTCGAATTTTCTTGGGAAAGCTGATAGGTGTATGCTATTAAACCAAAAGATCCAATTAAGTGCCCTTTAGTTCTGATATGAATACAAGTTGCTGGTAAACTCATGAAATCAACTTGTGCATGCCTTTTGAACTAGATTTAGGCCACTGATCAGAGAGAATAGCTAATGTAGATACACTATAACAATTTTGAAATGTGGATAAAGATATGACGGTGTCGACTAATTTCATTCCATGTACACATATTCATTTTTTGGACAAAAAGTTGTGTATTGAATGAACACATCCTAAATTTTGCCTGTAAAGATATATATTGTAAAAAGGGTTGAGTGATTTAAAGAAAAATATTTTAAAACTGTTATTTTAGTTTGTAGCTACACTTGGTATGAAAATATTTTAAATATTTGTGAATGAATATTTATATATATATATATATGCTGACATATATAAAAGGTGGACATAAGTTTTTTTTTTTTTTTTAAAAAGAACTAATTTCTCAAATCCTTTATTTATTTATTCTTTTTCCCTCCATTCCCTCGTTTCTCTCACACGCCGCCCTTCTTTCTTCTCACGAACGTGAACGGCCCTTTTCCCTTCCGATTTTCTTCTCACCGGAATTTTCTTATCGCCGGACGCCCCCCCAACCGCCGGACTTCTTCTTGTCGATCGCTGCCACCAAATTTCTTCTTCGCGGAACGCCCCACAGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGCCCCAAGCTCCATTAGGTGCTCTTACTTGTTACCACTTAATCTTTGCTTACTGTTTTCTTTGGATTACTAAAGAGAAGGAAAACTCGTGCATCTCTTCTTTATCCTACTACCTGAGGATACCTTTTGCTATTACTATTAGTTTGAATCACAAGTTTGGCTAGGCAATTTTTTTAGATAGAAAACCAAGGAATAAAGTGTTAGTAGTAGGGTTTTACTGTCATTTACTTGCAACTTTCACAAATTCTATAAAATGTCCTTTTGAGTTTTGAATGTTTCATTTTGTGGGGATTAATTGGAGATCTCTTGGTAATAATAATAGGCTGTCAATAAGAGCATAGTGATAATTAACTAAAGTGTCAACATTGATCATTTTTAGAAATTTTATGTTTGGTTTAGAGTTTTTGTCTTTCGCCCTCAAACGTAGACTCTCTCGAATTCAGTCCAATGATGAATTTTGCAGGCCTCTATCTGGCGAAGCATCCTAAGATTCACAGGTGACCCACTGCCGTTTGTTGCTAATACCTTCATTCGAGTCATCAAGTAAGTAACATTTACCTTCTCTCTCTTTCTTCTTAGTCTTTTATCTCTGTTGATGCTAAAATCCCACTCCCATTATGAACAACCCAAAATTGTGACAACATTGTCAAAACCTTCTTCTGTGTTTGATTTCCAGCCAGTTTTGTGTGCTTCACCATATTCTTCCTGAAAAGTAGGAATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGTATAATATAAACAGGGTAGTAATTATGCTTTCGTTGGTTCTTGCCCTTTTTGTGGTTTAATTTCACAATGCTCTTATGTGTAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGTATGAAATGTTGAGCTTCTTTCTCTTTGAACTATGCTATTCACTACATTTTTACAGTGTCATGCTCCTGGTTTTTATTTATTTTTGTTTCTTTTCTTCCTTTGGGAAACTTTAAACGTTTATTTGGTATGATAATGACTACTTAGATGTGTTGAAGTGCAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGTGGGGTACCTTGTTTTTCATTTTTTGTAATACATTTTGTTCATCCGTGTTTTGTACAATTTCCCGTGAATGGTTTGGTTTAGAAATTGATGTTTTCTTGGAAGCCGTCGTAATTTCATTTCATTTTATGTTGGAGAATAGGAGGTAATAATAAGTGAAAAATGAATAGTTGGGCATCAACAACTAGTTGGATATTTACTAGATAGTTGTTGAGAAAATGAAATTGATAGAAAAATATTGCAGTAGCAATAATTTGGGGTGAAAGAAACAATAGGCTTTTTAGGTGGATTGAGAAGTCTTAGGTCAGGTGTAATCCTTTGTTACATTTCAATCATCTCTCTAGGTTTTCACATGTAGGTCCTCTCTAGGATTTCATTTGTTCTCAATGAAAGGGTAGCTCTCCATCAATCTGGTATCCATTGCTTTAAGTCGTAGCCTTTTTTCTTTTTCATATGTACCTTTTGCTGTGCTTGTAATATTTGGGTTTTCATTGAATATAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGTTTGACTCGTGATTAGAAAAACAGATCAATCATATTTGCTTCCCTTGTTTGGATCAGTAACCTTTTCACTTGCTGACAAGTGTGTTTTTGTTGCCTTAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGTATATTTTCATTGTTGACTTTTGTCTACACTTCTCTTCTGTATCATTTGTTAACTTTAATAAACAAATTTTGTGCTTAATTATTTACTTTTGTCTACACTTCTCTTTTGTATCATTTACACTTTACAAGGCAGCACGACCATATAACCTTTGCTTCTTTGACCAAACTAATGTCCAATAAACACATTTTTTATTGAGCAAAGTCAAGCTTTAAGCCTATATTTGTCTCATTCAATTTTGAAATCTTTGCTATGCCATTTGCATATCAAAGGGATAAAACAAGAAATTTCCTAGTGAGAGTTGGCTAGTGGGATGAATTGATATGCAACTGAGGGGAACGACTAACGAGTATGGTTATATAGGCAGTGTTTACATGGGGAATGTTTTTTGTGGGACTTTTTGGATTTTCGTCTGGTAGGGAGAGGTTACCAGCCCCATTGTGAAAAAGTTTGTTAGGCTAGTGTTGCCGTGTCTCTATTTGTTTGTTACTAAAAGTATATATTTTTAAAAACTATATAATTTTTATGAAAAAAAAATTCAAATAAATGAGTTGATGCATTTATATGCTTGAAAAATTTAGTTTGATATATTTCACACTCAATTTATTATAATTGTCATATATGTATCTTTTCAGTCTGTTCTACCCAGCAAGTGTATATGTATGTATAATACCTTACTAATATTAGTATTAATATGAAAGAGTTGCCTGAAGGCTTGCCTTTGAGTACAAAGAGCTTAACCTCCCATTTCTCAAGACTACTTGCTAATTACCAAAAGCCTGCCCTAACTATCATCATCTTATTCAATACATAGATTGACCACTCCTCACTTCCATACAACCTTGTGGTCCTCACCATAACTAACTTTTACTTGTACTACTCTTTTTACCTCTTCTCGAATGTTTCACTAGAATTGGAGCCCTAAGCCCCTAACAATGTATTTAGCACATATAATACTAACAAGTGTCCAAGTCCGTGTCATGACAAGAGCATGCTAGTCAAACTAAAGTGTTCACGCTTATCAGGGTAGAGGTTACCACCTTGCTCATGTAAAAAGGCTGATATTCTAATGTTGATGTATTGGTTATCTTTGTTGTTTTTTTTTCTTTCTATTTTTCTTGAAGAAGTACAGGGATTAATTTAAAATTGAATATGATACTTTACTTAATTTTTTAATACTTCCGAAAGAAACTAATAAAACTTCAAATTGTTCTTCCCAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGAAAAAACTTTTAGATCTCTTACTGTATGGTAGATCTTAGATCGATAGTCTTTGATGGAATTCCAGTCTAGATGGTATAGATGATTGAAAGATAGTGATCTTGTAAAATTGCTAGTGTTTTAGACATTTTGATTCTATCTTGGCATTTGATTCTGTATCTTTGATTAAAGAACCAGTGCTTCGAATTCTTCACTACACAATGAGAAACAATTTTATTGACTAATTATTTGTAAACAAAGAATGAGCTTTGGAAGGATTAGAACTTGTAAAGAATCAAATACCTAAATTCTGAGGTGATGTTTCAAGGTATCGAGGAGAAATTTGAACTTCCGTTTAATTATATATAAACATTATATATATATATAAGGCCAGCTGATCAACTGCTTCTATTAGCTTGAGGTAAATGTAGCCGAAGCTGTCAAGTTCTATGATTCTTGTAAGGCTGCTTCCCTATTTCCAAATGCTTTGAAGATGTTTCTTTTTGTCTCAATTTCATTATCATTTTTGGCTATCCTTTTTGTAGACAGTTCAATTCATCAATGGTGTTCAAACTAATTCATTTTTTCTTTTCC

mRNA sequence

GAAGCATTGTATAAAGTTTGGATTCTTCATCCCACGTTGTAAAAAAGAAACAAAAAGTGTAAATGACAGGACAATGGGTGGCTTCTGCACCTCAAATTTCCATGGTTACATTTCATTCAGCTGATGGCTTGAATTGAATTCAAGCAGTCAGTAGCTTTCTAAAGGAAGAGGCAAGTGATCTTTAACTTCATCCACTTTCATAAAGTCAATTACACGAGTCTCTATTCACAAAAATAACCTGAAATTCATTCATACTCCACACCTGGAGCCACACCCTTTTTTCTTCAACTCTATCTACGATCTCATAGATCTGGTCTGTTTGGATTCTTTCCCTTTTCCCTTTTTGCTGTAGAGATTGGATTAGCTTCTTGCATTTTAGATTCCTACTTTATGGGTTTTCGATATTTTTAGGGGTTCTTCTAATTGGTAGTTTAAATTGTAGCTGACGGTAGAGTTTCTTTTCTTGGTGATTTGTTTTCTGTTAAAATTTTCAGTATGGAAGAACCCAATGAAGCTGGACATGAGAGTACTACAGATAAGTCAAATTATTGATATGGGTATCCAAGTTCATTCATTACTGAACACCAATGGTTTTACGTTCCTTCAGGTCAAGTTAGGATATGAAATCTAGTCGGAGAACATTTTATAACAACTTGGGAAAACAATGTAGATAACCATTGTCTTTTTTTCTAGAAGATGGAAATAAGCTTGTTTGTTGAAATGATACTAACACTCTAGAGATAATAAAGGAAACAAAACAGAAATAACCAACAAACAAAATCAAGTATGTTGCAGATACTTAGTAAGAGATTACAAGCTATCTATTTGAAGAAGAAAATAAAATGACTTCAATTTAAACTGATGTCTTGAATTGAATAGTCTATAAAAGTTTGAAAAGACGGCACGGAGAGAAGGTTTTAACTTGAGTAATCTCTTAAGAAACTTTTTTGCTCGCGGTAGTATCTCTATGGTTAGCATTTGATGGAGCTTTGTTTACATTTTCACTCGGATATACGAAATTGCATTTGTGGGGTTGATCGCAATAAAAATGGACGTTTACTGTTAGAATTTGACAGAAATGGAATGTTGATTACTATTATGTAATGTAACATGCTCATAAGGATGCATAATGCCTTCCCACTAGATTTTGGAGATGTAACTAGACATAAGGCATATGGGTAATGTGTGTAATGCTGATTAATGCCTACAGACGAATGTATATTCTATTTCTTAAACTTATATATATTCTTCTTATGGATGCTTCCAAGAAGGGGACGTGGCCCGAACTTCAATACTTAGTTGTGGCTTTAAATCTTCAAATTGGTAAAGCTCATCTCATTCTTCTACCATGGAAGGACCTTGAAGGCATAAATAGACTATGGTCGCCCTTGTAGTCCTAGTAAACTTGTGAAGGAATCTTTAAGATAGAATATATGTTGTTCATTCGTGAAGCTTCTATGTTATCATTTCTCATTGAATACTGCGAAAATCTCTACCATGTTATCCTTTAGAAAAACTAATGGATTCTTGTGAATGTCTATTTCTTTTCTTGCATTTTAAGGGATTCATTACAATTACAACATCCTCCAGCCTTTTATCATGGAGTCAGAGAATGAAGTTGAAGCCATGTATAGAGACTTCGAATTTTCTTGGGAAAGCTGATAGGTGTATGCTATTAAACCAAAAGATCCAATTAAGTGCCCTTTAGTTCTGATATGAATACAAGTTGCTGGTAAACTCATGAAATCAACTTGTGCATGCCTTTTGAACTAGATTTAGGCCACTGATCAGAGAGAATAGCTAATGTAGATACACTATAACAATTTTGAAATGTGGATAAAGATATGACGGTGTCGACTAATTTCATTCCATGTACACATATTCATTTTTTGGACAAAAAGTTGTGTATTGAATGAACACATCCTAAATTTTGCCTGTAAAGATATATATTGTAAAAAGGGTTGAGTGATTTAAAGAAAAATATTTTAAAACTGTTATTTTAGTTTGTAGCTACACTTGGTATGAAAATATTTTAAATATTTGTGAATGAATATTTATATATATATATATATGCTGACATATATAAAAGGTGGACATAAGTTTTTTTTTTTTTTTTAAAAAGAACTAATTTCTCAAATCCTTTATTTATTTATTCTTTTTCCCTCCATTCCCTCGTTTCTCTCACACGCCGCCCTTCTTTCTTCTCACGAACGTGAACGGCCCTTTTCCCTTCCGATTTTCTTCTCACCGGAATTTTCTTATCGCCGGACGCCCCCCCAACCGCCGGACTTCTTCTTGTCGATCGCTGCCACCAAATTTCTTCTTCGCGGAACGCCCCACAGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGCCCCAAGCTCCATTAGGCCTCTATCTGGCGAAGCATCCTAAGATTCACAGGTGACCCACTGCCGTTTGTTGCTAATACCTTCATTCGAGTCATCAACCAGTTTTGTGTGCTTCACCATATTCTTCCTGAAAAGTAGGAATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGAAAAAACTTTTAGATCTCTTACTGTATGGTAGATCTTAGATCGATAGTCTTTGATGGAATTCCAGTCTAGATGGTATAGATGATTGAAAGATAGTGATCTTGTAAAATTGCTAGTGTTTTAGACATTTTGATTCTATCTTGGCATTTGATTCTGTATCTTTGATTAAAGAACCAGTGCTTCGAATTCTTCACTACACAATGAGAAACAATTTTATTGACTAATTATTTGTAAACAAAGAATGAGCTTTGGAAGGATTAGAACTTGTAAAGAATCAAATACCTAAATTCTGAGGTGATGTTTCAAGGTATCGAGGAGAAATTTGAACTTCCGTTTAATTATATAAGGCCAGCTGATCAACTGCTTCTATTAGCTTGAGGTAAATGTAGCCGAAGCTGTCAAGTTCTATGATTCTTGTAAGGCTGCTTCCCTATTTCCAAATGCTTTGAAGATGTTTCTTTTTGTCTCAATTTCATTATCATTTTTGGCTATCCTTTTTGTAGACAGTTCAATTCATCAATGGTGTTCAAACTAATTCATTTTTTCTTTTCC

Coding sequence (CDS)

ATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

Protein sequence

MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Homology
[Close]
BLAST of CsGy1G001330 vs. NCBI nr
Match: XP_004151651.2 (PREDICTED: exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 PREDICTED: exosome complex component RRP42 [Cucumis sativus] >XP_011656329.1 PREDICTED: exosome complex component RRP42 [Cucumis sativus] >KGN63566.1 hypothetical protein Csa_1G004330 [Cucumis sativus])

HSP 1 Score: 549.7 bits (1415), Expect = 6.0e-153
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]
BLAST of CsGy1G001330 vs. NCBI nr
Match: XP_008441268.1 (PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441270.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899428.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899429.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899430.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899431.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899432.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo])

HSP 1 Score: 526.6 bits (1355), Expect = 5.4e-146
Identity = 272/286 (95.10%), Postives = 281/286 (98.25%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALSNTGIPKVH+AAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISI+RHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]
BLAST of CsGy1G001330 vs. NCBI nr
Match: XP_023529361.1 (exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exosome complex component RRP42 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 510.0 bits (1312), Expect = 5.3e-141
Identity = 260/286 (90.91%), Postives = 274/286 (95.80%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+TELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKV+V+AEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS++RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]
BLAST of CsGy1G001330 vs. NCBI nr
Match: XP_022927940.1 (exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome complex component RRP42 [Cucurbita moschata])

HSP 1 Score: 508.4 bits (1308), Expect = 1.5e-140
Identity = 259/286 (90.56%), Postives = 273/286 (95.45%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+TELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKV+V+ EA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS++RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]
BLAST of CsGy1G001330 vs. NCBI nr
Match: XP_022988876.1 (exosome complex component RRP42 [Cucurbita maxima] >XP_022988877.1 exosome complex component RRP42 [Cucurbita maxima])

HSP 1 Score: 504.2 bits (1297), Expect = 2.9e-139
Identity = 257/286 (89.86%), Postives = 273/286 (95.45%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFI+ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPN MQPDKGKVSI VDCSPTAEP FEGRGGEEL+TELS++LERCLLGGKSG+GA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKV+V+AEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS++RH H+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG GVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]
BLAST of CsGy1G001330 vs. TAIR10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 441.4 bits (1134), Expect = 4.2e-124
Identity = 219/285 (76.84%), Postives = 259/285 (90.88%), Query Frame = 0 

Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           +GLS GE+ FI+ GIAQDLRTDGR RLTYRPI +ET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+GRP+ +QPDKGKV++ +DCSPTAEP F GRGGEELS+EL++AL+RCLLGGKSG+GAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           I+LSSL++ EGK+CWDLYI+GLV+SS+GNLLDALGAAIKAAL+NT IPKV+V+AE  D+E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICG 241
           QPE+D+SDEE+LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSAVSIS++R GHICG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           LTKR G G+DPS+ILDMISV KHV+E L++KLDSEI AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]
BLAST of CsGy1G001330 vs. TAIR10
Match: AT3G12990.1 (ribonuclease PH45A)

HSP 1 Score: 118.6 bits (296), Expect = 6.2e-27
Identity = 81/257 (31.52%), Postives = 132/257 (51.36%), Query Frame = 0 

Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F+++ +  +LR DGRG   YR ++I+     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGID 123
           L +P   +P +G  SI  + SP A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V     DN Q 
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGG---DNSQD 190

Query: 184 EV--DVSDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 243
            +     + E L      +P   T      G   ++D T  EE+ M   ++++++ +G I
Sbjct: 191 VIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDI 250

Query: 244 CGLTKRGGVGVDPSIIL 257
           C + K G  GV+ S+IL
Sbjct: 251 CAIQKPGEEGVNQSVIL 256

[Close]
BLAST of CsGy1G001330 vs. TAIR10
Match: AT3G60500.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-26
Identity = 84/258 (32.56%), Postives = 135/258 (52.33%), Query Frame = 0 

Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGRG   YR ++I+     +  GS+ V++G T V+  V A+
Sbjct: 11  LTVNESKFVETALQSELRVDGRGLYDYRKLTIK---FGKEYGSSEVQLGQTHVMGFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFE-GRGGEELSTELSIALERCLLGGKSGSGAGI 123
           L +P   +P++G +SI  + SP A+P+FE GR GE  + EL   ++R L   ++     +
Sbjct: 71  LVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDRGLRESRA-----V 130

Query: 124 DLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQ 183
           D  SL V+ GK+ W + I+  ++ + GNL+DA   A  AAL     P   V  E   N Q
Sbjct: 131 DTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGE---NGQ 190

Query: 184 PEV--DVSDEEFLQFDTSGVPAIVTLTKVGKHYIV--DATLEEESQMSSAVSISIDRHGH 243
             +   + + E L      +P   T     K  IV  D T  EE+ M   ++++++ +G 
Sbjct: 191 EVIIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 ICGLTKRGGVGVDPSIIL 257
           IC + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]
BLAST of CsGy1G001330 vs. TAIR10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-19
Identity = 72/275 (26.18%), Postives = 123/275 (44.73%), Query Frame = 0 

Query: 11  FIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPM 70
           F +  +++ LR DGR     R   +   ++S A+GSA  ++G T ++A ++ E+  P+  
Sbjct: 27  FFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPSTD 86

Query: 71  QPDKGKVSISVD----CSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSS 130
            PD+G ++I       CSPT  P         +S  LS  +          S   IDL  
Sbjct: 87  SPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTIL---------SSGMIDLKE 146

Query: 131 LIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKV------HVAAEALDN 190
           L +V GK  W  Y++   + ++G L DA   A  AA SN  IP V       + A   + 
Sbjct: 147 LCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEK 206

Query: 191 EQPEVDVSDEEFL-----QFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDR 250
           +Q    ++++E +     +     +P  +T      + + D T EEES M + V++ +D 
Sbjct: 207 DQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDS 266

Query: 251 HGHICGLTKRGGVGVD-PSIILDMISVGKHVSEEL 270
              +    K GG  +   S I   + + +  ++EL
Sbjct: 267 SDQMVSFYKSGGAALAYSSAIKSCVELARKRAKEL 292

[Close]
BLAST of CsGy1G001330 vs. Swiss-Prot
Match: sp|Q15024|EXOS7_HUMAN (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-51
Identity = 111/283 (39.22%), Postives = 174/283 (61.48%), Query Frame = 0 

Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + +ETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+G P   +P++G +   VDCS +A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           +DL +L +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +  +  
Sbjct: 124 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLED--EEG 183

Query: 182 QPEVDVSDEEF--LQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 241
             ++++SD+ +  ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +
Sbjct: 184 SKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVV 243

Query: 242 CGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEA 283
             + K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 244 TCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

[Close]
BLAST of CsGy1G001330 vs. Swiss-Prot
Match: sp|Q9D0M0|EXOS7_MOUSE (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-50
Identity = 110/276 (39.86%), Postives = 169/276 (61.23%), Query Frame = 0 

Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + +ETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           +DL SL +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +  +  
Sbjct: 124 VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLED--EEG 183

Query: 182 QPEVDVSDEEF--LQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 241
             ++++SD+ +  ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +
Sbjct: 184 AKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVV 243

Query: 242 CGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDS 276
             + K G   +DP  I +M+   K V + L   L S
Sbjct: 244 TCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272

[Close]
BLAST of CsGy1G001330 vs. Swiss-Prot
Match: sp|Q54VM4|EXOS7_DICDI (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.6e-43
Identity = 117/326 (35.89%), Postives = 170/326 (52.15%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           M  +S  E LFIQ G+  ++R+DGR R+ YR  +IET  I  ANGSARV++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 61  KAELGR------PNPMQPDKGK-VSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLG 120
           KAE+         N  Q D  K +  SV+C P+A P FEG+G E L+ ELS  LER    
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSH 120

Query: 121 GK--------------------------------------SGSGAGIDLSSLIVVEGKLC 180
                                                   + SG   D +   +V GK  
Sbjct: 121 PNVIKNLKLTNPIISNXXXXXXXXXXXXXXXXXXXXXDIITNSG---DDNCFSIVSGKYY 180

Query: 181 WDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEV--DVSD--EE 240
           W LY++ +V+ S+GNL DAL  A ++AL NT IP+V    +A+  E  E+  +VSD  E+
Sbjct: 181 WTLYVDAIVLDSDGNLFDALSIACRSALQNTRIPRV----KAIQGEYEEITFEVSDDPED 240

Query: 241 FLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVD 278
            L      VP  VTLTK+G  +++D TL+EE  M++ +++ ++   +IC + K G  G+D
Sbjct: 241 TLSLSIDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLD 300

[Close]
BLAST of CsGy1G001330 vs. Swiss-Prot
Match: sp|Q8TYC2|RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.0e-34
Identity = 91/267 (34.08%), Postives = 151/267 (56.55%), Query Frame = 0 

Query: 12  IQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQ 71
           + A I    R DGR    +RPI +   VIS+ANGSA VR+G T+++  VK E+GRP P  
Sbjct: 14  VLAAIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDS 73

Query: 72  PDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVE 131
           P++G ++++ +  P A+P+FE    +E + ELS  ++R +   +      IDL  L + E
Sbjct: 74  PNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEE 133

Query: 132 GKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEE 191
           G+ CW  +++  V+  +GNL DA      +ALS T +PK    AE +D+   EV+V +E+
Sbjct: 134 GEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPK----AEVVDD---EVEVMEED 193

Query: 192 FLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVD 251
                 +  P  VT+ KVG++ +VD  LEEE  M + +++++   G +C + K G +G  
Sbjct: 194 TEPLAINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDF 253

Query: 252 PSIIL-DMISVGKHVSEELLNKLDSEI 278
           P  +L D I +    +EE+   + +++
Sbjct: 254 PEHLLEDAIDLATKKAEEVRRTVKAQL 267

[Close]
BLAST of CsGy1G001330 vs. Swiss-Prot
Match: sp|O26778|RRP42_METTH (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp42 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-33
Identity = 85/257 (33.07%), Postives = 134/257 (52.14%), Query Frame = 0 

Query: 21  RTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +R ISIET VIS+A GS+RV++G T++I  VK ++G P P  P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVEGKLCWDLYI 140
            +  P A P FE    +E S ELS  ++RC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGV 200
           +  ++  +GNL DA   A  AAL +T IP   V       E  EV ++ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILDMIS 260
             + T  K+G   ++D +LEEE  +++ +SI +   G IC + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEELLNKLDSEI 278
           +      +L+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]
BLAST of CsGy1G001330 vs. TrEMBL
Match: tr|A0A0A0LU91|A0A0A0LU91_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 4.0e-153
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]
BLAST of CsGy1G001330 vs. TrEMBL
Match: tr|A0A1S3B3T5|A0A1S3B3T5_CUCME (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 3.6e-146
Identity = 272/286 (95.10%), Postives = 281/286 (98.25%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALSNTGIPKVH+AAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISI+RHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]
BLAST of CsGy1G001330 vs. TrEMBL
Match: tr|V4UA38|V4UA38_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016158mg PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 7.5e-128
Identity = 237/286 (82.87%), Postives = 260/286 (90.91%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FI+ GIAQDLR+DGR R TYRPI +ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSEGEKEFIKGGIAQDLRSDGRKRYTYRPIYVETGVIPQANGSARVRMGSTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP VHVAAEA  +
Sbjct: 121 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVSISI+R GHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           G+ KRGGVG+DPS+ILDMISV   VS +L++KLDSEI AAEADEEE
Sbjct: 241 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAEADEEE 286

[Close]
BLAST of CsGy1G001330 vs. TrEMBL
Match: tr|A0A2H5PL70|A0A2H5PL70_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_146860 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 7.5e-128
Identity = 237/286 (82.87%), Postives = 260/286 (90.91%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FI+ GIAQDLR+DGR R TYRPI +ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSEGEKEFIKGGIAQDLRSDGRKRYTYRPIYVETGVIPQANGSARVRMGSTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP VHVAAEA  +
Sbjct: 121 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVSISI+R GHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           G+ KRGGVG+DPS+ILDMISV   VS +L++KLDSEI AAEADEEE
Sbjct: 241 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAEADEEE 286

[Close]
BLAST of CsGy1G001330 vs. TrEMBL
Match: tr|A0A151RLB1|A0A151RLB1_CAJCA (Exosome complex exonuclease RRP42 OS=Cajanus cajan OX=3821 GN=KK1_035204 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 1.7e-127
Identity = 234/285 (82.11%), Postives = 263/285 (92.28%), Query Frame = 0 

Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GE+ FIQ GIAQDLR DGR RLTYRPIS+ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSVGEQHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           K ELG+P+ +QPDKGKVSI +DCS TAEPAFEGRGG+EL+ ELSIAL+RCLLGGKSG+GA
Sbjct: 61  KPELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSIALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGK+CWDLYI+GLVVSS+GNLLDALGAAIKAALSNTGIP+V VAA   ++
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYIVDAT EEESQMSSAVSIS++RHGHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEE 286
           G+TKRGG G+DPSIILDMISV KHVSE+++NKLDSEI +AEA+EE
Sbjct: 241 GITKRGGAGLDPSIILDMISVAKHVSEQVINKLDSEIASAEAEEE 285

The following BLAST results are available for this feature:
BLAST of CsGy1G001330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151651.26.0e-153100.00PREDICTED: exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 PRE... [more]
XP_008441268.15.4e-14695.10PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 P... [more]
XP_023529361.15.3e-14190.91exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exo... [more]
XP_022927940.11.5e-14090.56exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome com... [more]
XP_022988876.12.9e-13989.86exosome complex component RRP42 [Cucurbita maxima] >XP_022988877.1 exosome compl... [more]
BLAST of CsGy1G001330 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07750.14.2e-12476.843'-5'-exoribonuclease family protein[more]
AT3G12990.16.2e-2731.52ribonuclease PH45A[more]
AT3G60500.12.4e-2632.563'-5'-exoribonuclease family protein[more]
AT1G60080.12.1e-1926.183'-5'-exoribonuclease family protein[more]
BLAST of CsGy1G001330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q15024|EXOS7_HUMAN3.4e-5139.22Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3[more]
sp|Q9D0M0|EXOS7_MOUSE2.9e-5039.86Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2[more]
sp|Q54VM4|EXOS7_DICDI2.6e-4335.89Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ... [more]
sp|Q8TYC2|RRP42_METKA5.0e-3434.08Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324... [more]
sp|O26778|RRP42_METTH2.5e-3333.07Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai... [more]
BLAST of CsGy1G001330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LU91|A0A0A0LU91_CUCSA4.0e-153100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1[more]
tr|A0A1S3B3T5|A0A1S3B3T5_CUCME3.6e-14695.10exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=... [more]
tr|V4UA38|V4UA38_9ROSI7.5e-12882.87Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016158mg PE=4 ... [more]
tr|A0A2H5PL70|A0A2H5PL70_CITUN7.5e-12882.87Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_146860 PE=4 SV=1[more]
tr|A0A151RLB1|A0A151RLB1_CAJCA1.7e-12782.11Exosome complex exonuclease RRP42 OS=Cajanus cajan OX=3821 GN=KK1_035204 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR036345ExoRNase_PH_dom2_sf
IPR001247ExoRNase_PH_dom1
IPR015847ExoRNase_PH_dom2
IPR027408PNPase/RNase_PH_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G001330.1CsGy1G001330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3DG3DSA:3.30.230.70coord: 3..286
e-value: 3.5E-82
score: 278.0
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 200..263
e-value: 4.6E-8
score: 32.9
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 30..169
e-value: 5.6E-28
score: 98.0
NoneNo IPR availablePANTHERPTHR11097:SF8EXOSOME COMPLEX COMPONENT RRP42coord: 1..281
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 1..281
NoneNo IPR availableCDDcd11367RNase_PH_RRP42coord: 4..277
e-value: 8.54192E-124
score: 356.52
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILYSSF55666Ribonuclease PH domain 2-likecoord: 196..279
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILYSSF54211Ribosomal protein S5 domain 2-likecoord: 4..174
coord: 209..223

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G001330Csa1G004330Cucumber (Chinese Long) v2cgybcuB001
CsGy1G001330CSPI01G01260Wild cucumber (PI 183967)cgybcpiB001
CsGy1G001330CsaV3_1G001380Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G001330Melon (DHL92) v3.6.1cgybmedB043
CsGy1G001330Cucumber (Gy14) v2cgybcgybB004
CsGy1G001330Cucurbita maxima (Rimu)cgybcmaB004
CsGy1G001330Cucurbita maxima (Rimu)cgybcmaB028
CsGy1G001330Cucurbita maxima (Rimu)cgybcmaB066
CsGy1G001330Cucurbita maxima (Rimu)cgybcmaB099
CsGy1G001330Cucurbita moschata (Rifu)cgybcmoB005
CsGy1G001330Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G001330Cucurbita moschata (Rifu)cgybcmoB062
CsGy1G001330Cucurbita moschata (Rifu)cgybcmoB093
CsGy1G001330Cucurbita moschata (Rifu)cgybcmoB121
CsGy1G001330Cucurbita pepo (Zucchini)cgybcpeB012
CsGy1G001330Cucurbita pepo (Zucchini)cgybcpeB053
CsGy1G001330Cucurbita pepo (Zucchini)cgybcpeB062
CsGy1G001330Cucurbita pepo (Zucchini)cgybcpeB085
CsGy1G001330Cucurbita pepo (Zucchini)cgybcpeB126
CsGy1G001330Cucumber (Chinese Long) v2cgybcuB010
CsGy1G001330Bottle gourd (USVL1VR-Ls)cgyblsiB032
CsGy1G001330Bottle gourd (USVL1VR-Ls)cgyblsiB067
CsGy1G001330Melon (DHL92) v3.5.1cgybmeB015
CsGy1G001330Melon (DHL92) v3.5.1cgybmeB048
CsGy1G001330Melon (DHL92) v3.6.1cgybmedB013
CsGy1G001330Watermelon (Charleston Gray)cgybwcgB002
CsGy1G001330Watermelon (Charleston Gray)cgybwcgB025
CsGy1G001330Watermelon (Charleston Gray)cgybwcgB078
CsGy1G001330Watermelon (Charleston Gray)cgybwcgB086
CsGy1G001330Watermelon (97103) v1cgybwmB003
CsGy1G001330Watermelon (97103) v1cgybwmB094
CsGy1G001330Wild cucumber (PI 183967)cgybcpiB009
CsGy1G001330Wild cucumber (PI 183967)cgybcpiB033
CsGy1G001330Silver-seed gourdcarcgybB0371
CsGy1G001330Silver-seed gourdcarcgybB0990
CsGy1G001330Silver-seed gourdcarcgybB1031
CsGy1G001330Cucumber (Chinese Long) v3cgybcucB009
CsGy1G001330Watermelon (97103) v2cgybwmbB076
CsGy1G001330Watermelon (97103) v2cgybwmbB013
CsGy1G001330Watermelon (97103) v2cgybwmbB087
CsGy1G001330Wax gourdcgybwgoB008
CsGy1G001330Wax gourdcgybwgoB054
CsGy1G001330Wax gourdcgybwgoB067
CsGy1G001330Wax gourdcgybwgoB092