Csa1G004330.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G004330.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Probable exosome complex exonuclease 2; contains IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR020568 (Ribosomal protein S5 domain 2-type fold), IPR027408 (PNPase/RNase PH domain)
Location	Chr1 : 795370 .. 798296 (+)
Sequence length	861

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGTATAATATAAACAGGGTAGTAATTATGCTTTCGTTGGTTCTTGCCCTTTTTGTGGTTTAATTTCACAATGCTCTTATGTGTAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGTATGAAATGTTGAGCTTCTTTCTCTTTGAACTATGCTATTCACTACATTTTTACAGTGTCATGCTCCTGGTTTTTATTTATTTTTGTTTCTTTTCTTCCTTTGGGAAACTTTAAACGTTTATTTGGTATGATAATGACTACTTAGATGTGTTGAAGTGCAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGTGGGGTACCTTGTTTTTCATTTTTTGTAATACATTTTGTTCATCCGTGTTTTGTACAATTTCCCGTGAATGGTTTGGTTTAGAAATTGATGTTTTCTTGGAAGCCGTCGTAATTTCATTTCATTTTATGTTGGAGAATAGGAGGTAATAATAAGTGAAAAATGAATAGTTGGGCATCAACAACTAGTTGGATATTTACTAGATAGTTGTTGAGAAAATGAAATTGATAGAAAAATATTGCAGTAGCAATAATTTGGGGTGAAAGAAACAATAGGCTTTTTAGGTGGATTGAGAAGTCTTAGGTCAGGTGTAATCCTTTGTTACATTTCAATCATCTCTCTAGGTTTTCACATGTAGGTCCTCTCTAGGATTTCATTTGTTCTCAATGAAAGGGTAGCTCTCCATCAATCTGGTATCCATTGCTTTAAGTCGTAGCCTTTTTTCTTTTTCATATGTACCTTTTGCTGTGCTTGTAATATTTGGGTTTTCATTGAATATAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGTTTGACTCGTGATTAGAAAAACAGATCAATCATATTTGCTTCCCTTGTTTGGATCAGTAACCTTTTCACTTGCTGACAAGTGTGTTTTTGTTGCCTTAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGTATATTTTCATTGTTGACTTTTGTCTACACTTCTCTTCTGTATCATTTGTTAACTTTAATAAACAAATTTTGTGCTTAATTATTTACTTTTGTCTACACTTCTCTTTTGTATCATTTACACTTTACAAGGCAGCACGACCATATAACCTTTGCTTCTTTGACCAAACTAATGTCCAATAAACACATTTTTTATTGAGCAAAGTCAAGCTTTAAGCCTATATTTGTCTCATTCAATTTTGAAATCTTTGCTATGCCATTTGCATATCAAAGGGATAAAACAAGAAATTTCCTAGTGAGAGTTGGCTAGTGGGATGAATTGATATGCAACTGAGGGGAACGACTAACGAGTATGGTTATATAGGCAGTGTTTACATGGGGAATGTTTTTTGTGGGACTTTTTGGATTTTCGTCTGGTAGGGAGAGGTTACCAGCCCCATTGTGAAAAAGTTTGTTAGGCTAGTGTTGCCGTGTCTCTATTTGTTTGTTACTAAAAGTATATATTTTTAAAAACTATATAATTTTTATGAAAAAAAAATTCAAATAAATGAGTTGATGCATTTATATGCTTGAAAAATTTAGTTTGATATATTTCACACTCAATTTATTATAATTGTCATATATGTATCTTTTCAGTCTGTTCTACCCAGCAAGTGTATATGTATGTATAATACCTTACTAATATTAGTATTAATATGAAAGAGTTGCCTGAAGGCTTGCCTTTGAGTACAAAGAGCTTAACCTCCCATTTCTCAAGACTACTTGCTAATTACCAAAAGCCTGCCCTAACTATCATCATCTTATTCAATACATAGATTGACCACTCCTCACTTCCATACAACCTTGTGGTCCTCACCATAACTAACTTTTACTTGTACTACTCTTTTTACCTCTTCTCGAATGTTTCACTAGAATTGGAGCCCTAAGCCCCTAACAATGTATTTAGCACATATAATACTAACAAGTGTCCAAGTCCGTGTCATGACAAGAGCATGCTAGTCAAACTAAAGTGTTCACGCTTATCAGGGTAGAGGTTACCACCTTGCTCATGTAAAAAGGCTGATATTCTAATGTTGATGTATTGGTTATCTTTGTTGTTTTTTTTTCTTTCTATTTTTCTTGAAGAAGTACAGGGATTAATTTAAAATTGAATATGATACTTTACTTAATTTTTTAATACTTCCGAAAGAAACTAATAAAACTTCAAATTGTTCTTCCCAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

mRNA sequence

ATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

Coding sequence (CDS)

ATGGTGGGTCTTTCAACTGGAGAGAAGCTTTTCATTCAAGCTGGCATCGCTCAGGATCTTCGCACTGATGGTCGAGGGAGGTTAACTTATCGACCCATCTCTATAGAAACCGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCCGAATGGGTGGTACTGAAGTTATTGCCACAGTTAAGGCGGAACTTGGAAGGCCTAATCCAATGCAACCTGACAAAGGGAAGGTCTCGATCTCTGTTGATTGTAGTCCGACTGCAGAGCCGGCATTTGAGGGTAGGGGTGGTGAAGAGTTGTCAACGGAACTCTCGATTGCTCTTGAGCGATGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCTTTCATCTTTGATAGTTGTGGAAGGGAAGCTTTGTTGGGATCTCTATATTGAGGGGTTGGTGGTAAGCTCAGAAGGCAATCTTCTAGACGCTCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATTAGACAACGAACAACCTGAAGTTGACGTAAGTGATGAAGAATTTCTACAGTTCGATACATCTGGGGTTCCAGCCATTGTTACATTGACAAAAGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGTTCTGCAGTCTCCATATCCATCGACAGGCATGGTCACATTTGTGGGTTGACTAAACGTGGGGGTGTTGGGGTTGATCCAAGCATAATCCTCGATATGATATCCGTGGGCAAACATGTTAGCGAGGAGTTGCTGAACAAGTTGGACTCAGAGATTGTGGCTGCCGAAGCTGATGAAGAGGAATGA

Protein sequence

MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE*

Homology

[Close]

BLAST of Csa1G004330.1 vs. Swiss-Prot
Match: EXOS7_HUMAN (Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 205.3 bits (521), Expect = 9.0e-52
Identity = 111/283 (39.22%), Postives = 172/283 (60.78%), Query Frame = 1


Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + +ETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+G P   +P++G +   VDCS +A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           +DL +L +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +  +  
Sbjct: 124 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLED--EEG 183

Query: 182 QPEVDVSDEEF--LQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 241
             ++++SD+ +  ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +
Sbjct: 184 SKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVV 243

Query: 242 CGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEA 283
             + K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 244 TCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

[Close]

BLAST of Csa1G004330.1 vs. Swiss-Prot
Match: EXOS7_MOUSE (Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-50
Identity = 110/276 (39.86%), Postives = 167/276 (60.51%), Query Frame = 1


Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGRG   YR + +ETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           +DL SL +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +  +  
Sbjct: 124 VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLED--EEG 183

Query: 182 QPEVDVSDEEF--LQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 241
             ++++SD+ +  ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +
Sbjct: 184 AKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVV 243

Query: 242 CGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDS 276
             + K G   +DP  I +M+   K V + L   L S
Sbjct: 244 TCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272

[Close]

BLAST of Csa1G004330.1 vs. Swiss-Prot
Match: RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-34
Identity = 91/267 (34.08%), Postives = 149/267 (55.81%), Query Frame = 1


Query: 12  IQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQ 71
           + A I    R DGR    +RPI +   VIS+ANGSA VR+G T+++  VK E+GRP P  
Sbjct: 14  VLAAIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDS 73

Query: 72  PDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVE 131
           P++G ++++ +  P A+P+FE    +E + ELS  ++R +   +      IDL  L + E
Sbjct: 74  PNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEE 133

Query: 132 GKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEE 191
           G+ CW  +++  V+  +GNL DA      +ALS T +PK    AE +D+   EV+V +E+
Sbjct: 134 GEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPK----AEVVDD---EVEVMEED 193

Query: 192 FLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVD 251
                 +  P  VT+ KVG++ +VD  LEEE  M + +++++   G +C + K G +G  
Sbjct: 194 TEPLAINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDF 253

Query: 252 PSIIL-DMISVGKHVSEELLNKLDSEI 278
           P  +L D I +    +EE+   + +++
Sbjct: 254 PEHLLEDAIDLATKKAEEVRRTVKAQL 267

[Close]

BLAST of Csa1G004330.1 vs. Swiss-Prot
Match: RRP42_METTH (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rrp42 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.4e-34
Identity = 85/257 (33.07%), Postives = 132/257 (51.36%), Query Frame = 1


Query: 21  RTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 80
           R DGR    +R ISIET VIS+A GS+RV++G T++I  VK ++G P P  P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSSLIVVEGKLCWDLYI 140
            +  P A P FE    +E S ELS  ++RC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGV 200
           +  ++  +GNL DA   A  AAL +T IP   V       E  EV ++ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILDMIS 260
             + T  K+G   ++D +LEEE  +++ +SI +   G IC + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEELLNKLDSEI 278
           +      +L+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]

BLAST of Csa1G004330.1 vs. Swiss-Prot
Match: RRP42_THEGJ (Exosome complex component Rrp42 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-32
Identity = 92/267 (34.46%), Postives = 136/267 (50.94%), Query Frame = 1


Query: 12  IQAGIAQDL---------RTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKA 71
           I AGI +D          R DGR    YR I I+T  I +A GSA VR+GGT V+  +K 
Sbjct: 6   IMAGIMRDRILNLLKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKV 65

Query: 72  ELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGI 131
           ++G P P  PD+G ++ +V+  P A P FE    +E + EL+  ++R +   ++     +
Sbjct: 66  DVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQA-----V 125

Query: 132 DLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQ 191
           +L  L++V GKL   ++I+  V+  +GNL DA G A  AAL  T IPKV        NE+
Sbjct: 126 ELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEY------NEE 185

Query: 192 PEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGL 251
               +  +E+       VP  VT  K+G   IVD  L+EE+ M S ++I+ D  GHI  +
Sbjct: 186 TGEIIKLDEYEPLPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAV 245

Query: 252 TKRGGVGVDPSIILDMISVGKHVSEEL 270
            K  G       ++  I      ++EL
Sbjct: 246 QKGEGGSFKLEEVMYAIDTALKKADEL 261

[Close]

BLAST of Csa1G004330.1 vs. TrEMBL
Match: V4UA38_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016158mg PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 2.2e-129
Identity = 237/286 (82.87%), Postives = 260/286 (90.91%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FI+ GIAQDLR+DGR R TYRPI +ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSEGEKEFIKGGIAQDLRSDGRKRYTYRPIYVETGVIPQANGSARVRMGSTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP VHVAAEA  +
Sbjct: 121 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVSISI+R GHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           G+ KRGGVG+DPS+ILDMISV   VS +L++KLDSEI AAEADEEE
Sbjct: 241 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAEADEEE 286

[Close]

BLAST of Csa1G004330.1 vs. TrEMBL
Match: A0A151RLB1_CAJCA (Exosome complex exonuclease RRP42 OS=Cajanus cajan GN=KK1_035204 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 8.2e-129
Identity = 234/285 (82.11%), Postives = 263/285 (92.28%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GE+ FIQ GIAQDLR DGR RLTYRPIS+ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSVGEQHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           K ELG+P+ +QPDKGKVSI +DCS TAEPAFEGRGG+EL+ ELSIAL+RCLLGGKSG+GA
Sbjct: 61  KPELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSIALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGK+CWDLYI+GLVVSS+GNLLDALGAAIKAALSNTGIP+V VAA   ++
Sbjct: 121 GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYIVDAT EEESQMSSAVSIS++RHGHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEE 286
           G+TKRGG G+DPSIILDMISV KHVSE+++NKLDSEI +AEA+EE
Sbjct: 241 GITKRGGAGLDPSIILDMISVAKHVSEQVINKLDSEIASAEAEEE 285

[Close]

BLAST of Csa1G004330.1 vs. TrEMBL
Match: A0A059BFR0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02573 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 1.4e-128
Identity = 234/286 (81.82%), Postives = 264/286 (92.31%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLF+Q GIAQDLR+DGR RLTYRPI +ET VI QANGSARVRMGGT+VIA+V
Sbjct: 1   MNGLSLGEKLFVQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRMGGTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAE+GRP+P+QP+KGKVSI VDCSPTA P FEGRG EELSTELS+AL+RCLLGGKSG+GA
Sbjct: 61  KAEIGRPSPLQPNKGKVSIYVDCSPTAAPVFEGRGAEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGK+CWDLYI+GLVVSS+GNLLDALGAAIKAALSNTGIP+VHVAAEA   
Sbjct: 121 GIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVHVAAEASGE 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           +QPE+D+SDEEFLQFDTSGVP IVTLTKVG+HYIVDATL+EES+MSSA+S+SI+R G IC
Sbjct: 181 DQPELDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLDEESEMSSALSVSINRKGLIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG G+DPS+ILDMISV KHVSE+L ++LDSEI AAEA EEE
Sbjct: 241 GLTKRGGAGLDPSVILDMISVAKHVSEQLTDRLDSEISAAEAVEEE 286

[Close]

BLAST of Csa1G004330.1 vs. TrEMBL
Match: A0A061FPE8_THECC (3'-5'-exoribonuclease family protein isoform 2 OS=Theobroma cacao GN=TCM_043261 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.2e-127
Identity = 229/286 (80.07%), Postives = 264/286 (92.31%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQ GIAQDLR+DGR RLTYRPI +ET VI QA+GSAR+R+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARIRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELG+P+ +QPDKGK++I VDCSPTA P FEGRGGEELSTELS+AL+RCLLGGKSGSG+
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGSGS 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GID SSL++VEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIPKV+VA+E   +
Sbjct: 121 GIDPSSLVIVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPKVNVASETSGD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEV++SDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQ+SSA+SISI+R GHIC
Sbjct: 181 EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQISSAISISINRKGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG G+DPSIILDMISV KHVSE+L+NKLDSEI AAEA+EEE
Sbjct: 241 GLTKRGGAGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEANEEE 286

[Close]

BLAST of Csa1G004330.1 vs. TrEMBL
Match: A0A0B0PWL1_GOSAR (Exosome complex component RRP42 OS=Gossypium arboreum GN=F383_08846 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 2.0e-127
Identity = 231/286 (80.77%), Postives = 261/286 (91.26%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQ GIAQDLR+DGR RLTYRPI +ET VI QA+GSARVR+G T+VIA+V
Sbjct: 1   MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARVRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELG+P+ +QPDKGK++I VDCSPTA P FEGRGGEELSTELS+AL+RCLLGGKSG+GA
Sbjct: 61  KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GID +SL+VVEGK+CWDLYI+GLV+SS+GNLLDAL AAIKAALSNTGIPKV VA E   +
Sbjct: 121 GIDPTSLVVVEGKVCWDLYIDGLVISSDGNLLDALAAAIKAALSNTGIPKVDVAVETRSD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEV++SDEEFLQFDTSG+P IVTLTKVG+HYIVDAT EEESQMSSAVSIS++R GHIC
Sbjct: 181 EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRKGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVG+DPSIILDMISV KHVSE+L+NKLDSEI AAEA EEE
Sbjct: 241 GLTKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEASEEE 286

[Close]

BLAST of Csa1G004330.1 vs. TAIR10
Match: AT3G07750.1 (AT3G07750.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 445.7 bits (1145), Expect = 2.2e-125
Identity = 219/285 (76.84%), Postives = 257/285 (90.18%), Query Frame = 1


Query: 2   VGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVK 61
           +GLS GE+ FI+ GIAQDLRTDGR RLTYRPI +ET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAG 121
           AE+GRP+ +QPDKGKV++ +DCSPTAEP F GRGGEELS+EL++AL+RCLLGGKSG+GAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNE 181
           I+LSSL++ EGK+CWDLYI+GLV+SS+GNLLDALGAAIKAAL+NT IPKV+V+AE  D+E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICG 241
           QPE+D+SDEE+LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSAVSIS++R GHICG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           LTKR G G+DPS+ILDMISV KHV+E L++KLDSEI AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Csa1G004330.1 vs. TAIR10
Match: AT3G12990.1 (AT3G12990.1 ribonuclease PH45A)

HSP 1 Score: 119.0 bits (297), Expect = 4.8e-27
Identity = 81/257 (31.52%), Postives = 130/257 (50.58%), Query Frame = 1


Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F+++ +  +LR DGRG   YR ++I+     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGID 123
           L +P   +P +G  SI  + SP A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V     DN Q 
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGG---DNSQD 190

Query: 184 EV--DVSDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISIDRHGHI 243
            +     + E L      +P   T      G   ++D T  EE+ M   ++++++ +G I
Sbjct: 191 VIIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDI 250

Query: 244 CGLTKRGGVGVDPSIIL 257
           C + K G  GV+ S+IL
Sbjct: 251 CAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Csa1G004330.1 vs. TAIR10
Match: AT3G60500.1 (AT3G60500.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-26
Identity = 84/258 (32.56%), Postives = 133/258 (51.55%), Query Frame = 1


Query: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGRG   YR ++I+     +  GS+ V++G T V+  V A+
Sbjct: 11  LTVNESKFVETALQSELRVDGRGLYDYRKLTIK---FGKEYGSSEVQLGQTHVMGFVTAQ 70

Query: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFE-GRGGEELSTELSIALERCLLGGKSGSGAGI 123
           L +P   +P++G +SI  + SP A+P+FE GR GE  + EL   ++R L   ++     +
Sbjct: 71  LVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDRGLRESRA-----V 130

Query: 124 DLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQ 183
           D  SL V+ GK+ W + I+  ++ + GNL+DA   A  AAL     P   V  E   N Q
Sbjct: 131 DTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGE---NGQ 190

Query: 184 PEV--DVSDEEFLQFDTSGVPAIVTLTKVGKHYIV--DATLEEESQMSSAVSISIDRHGH 243
             +   + + E L      +P   T     K  IV  D T  EE+ M   ++++++ +G 
Sbjct: 191 EVIIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 ICGLTKRGGVGVDPSIIL 257
           IC + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Csa1G004330.1 vs. TAIR10
Match: AT1G60080.1 (AT1G60080.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 94.7 bits (234), Expect = 9.6e-20
Identity = 72/275 (26.18%), Postives = 122/275 (44.36%), Query Frame = 1


Query: 11  FIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAELGRPNPM 70
           F +  +++ LR DGR     R   +   ++S A+GSA  ++G T ++A ++ E+  P+  
Sbjct: 27  FFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPSTD 86

Query: 71  QPDKGKVSISVD----CSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGIDLSS 130
            PD+G ++I       CSPT  P         +S  LS  +          S   IDL  
Sbjct: 87  SPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTIL---------SSGMIDLKE 146

Query: 131 LIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKV------HVAAEALDN 190
           L +V GK  W  Y++   + ++G L DA   A  AA SN  IP V       + A   + 
Sbjct: 147 LCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEK 206

Query: 191 EQPEVDVSDEEFL-----QFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDR 250
           +Q    ++++E +     +     +P  +T      + + D T EEES M + V++ +D 
Sbjct: 207 DQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDS 266

Query: 251 HGHICGLTKRGGVGVD-PSIILDMISVGKHVSEEL 270
              +    K GG  +   S I   + + +  ++EL
Sbjct: 267 SDQMVSFYKSGGAALAYSSAIKSCVELARKRAKEL 292

[Close]

BLAST of Csa1G004330.1 vs. NCBI nr
Match: gi|778655595|ref|XP_004151651.2| (PREDICTED: exosome complex component RRP42 [Cucumis sativus])

HSP 1 Score: 553.9 bits (1426), Expect = 1.6e-154
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Csa1G004330.1 vs. NCBI nr
Match: gi|659081317|ref|XP_008441268.1| (PREDICTED: exosome complex component RRP42-like [Cucumis melo])

HSP 1 Score: 530.8 bits (1366), Expect = 1.5e-147
Identity = 272/286 (95.10%), Postives = 281/286 (98.25%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRPNPMQ +KGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSGSGA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SSEGNLLDALGAAIKAALSNTGIPKVH+AAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVDVSDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISI+RHGHIC
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGGVGVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Csa1G004330.1 vs. NCBI nr
Match: gi|568830399|ref|XP_006469488.1| (PREDICTED: exosome complex component RRP42 isoform X1 [Citrus sinensis])

HSP 1 Score: 469.9 bits (1208), Expect = 3.1e-129
Identity = 237/286 (82.87%), Postives = 260/286 (90.91%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FI+ GIAQDLR+DGR R TYRPI +ET VI QANGSARVRMG T+VIA+V
Sbjct: 8   MVGLSEGEKEFIKGGIAQDLRSDGRKRYTYRPIYVETGVIPQANGSARVRMGSTDVIASV 67

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+RCLLGGKSG+GA
Sbjct: 68  KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGA 127

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP VHVAAEA  +
Sbjct: 128 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 187

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVSISI+R GHIC
Sbjct: 188 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 247

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           G+ KRGGVG+DPS+ILDMISV   VS +L++KLDSEI AAEADEEE
Sbjct: 248 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAEADEEE 293

[Close]

BLAST of Csa1G004330.1 vs. NCBI nr
Match: gi|567910923|ref|XP_006447775.1| (hypothetical protein CICLE_v10016158mg [Citrus clementina])

HSP 1 Score: 469.9 bits (1208), Expect = 3.1e-129
Identity = 237/286 (82.87%), Postives = 260/286 (90.91%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FI+ GIAQDLR+DGR R TYRPI +ET VI QANGSARVRMG T+VIA+V
Sbjct: 1   MVGLSEGEKEFIKGGIAQDLRSDGRKRYTYRPIYVETGVIPQANGSARVRMGSTDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+RCLLGGKSG+GA
Sbjct: 61  KAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP VHVAAEA  +
Sbjct: 121 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVSISI+R GHIC
Sbjct: 181 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           G+ KRGGVG+DPS+ILDMISV   VS +L++KLDSEI AAEADEEE
Sbjct: 241 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAEADEEE 286

[Close]

BLAST of Csa1G004330.1 vs. NCBI nr
Match: gi|1009164949|ref|XP_015900774.1| (PREDICTED: exosome complex component RRP42 [Ziziphus jujuba])

HSP 1 Score: 468.4 bits (1204), Expect = 9.1e-129
Identity = 236/286 (82.52%), Postives = 262/286 (91.61%), Query Frame = 1


Query: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQ GIAQDLR+DGR RLTYRPI +ET VI QANGSARVR+G T+VIA+V
Sbjct: 1   MVGLSLGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQANGSARVRLGATDVIASV 60

Query: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120
           KAELG+P+P+QPDKGKV+I VDCSPTA P FEGRGGEELS ELS+AL+RCLLGGKSG+GA
Sbjct: 61  KAELGKPHPLQPDKGKVAIYVDCSPTAAPIFEGRGGEELSMELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180
           GI LSSL+VVEGK+CWDLYI+GLVVSS+GNLLDALGAAIKAALSNTGIP+V+VAA A  +
Sbjct: 121 GISLSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAAGASGD 180

Query: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240
           E+PEVDVSDEEFLQFDTSGVP I+TLTKVG+HYIVDAT EEESQMSSAVSIS++R GHIC
Sbjct: 181 EEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATTEEESQMSSAVSISVNRQGHIC 240

Query: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 287
           GLTKRGG GVDPSIILDMISV KHVSE+LLN+LDSEI AAEA E E
Sbjct: 241 GLTKRGGAGVDPSIILDMISVAKHVSEQLLNQLDSEIAAAEARENE 286

The following BLAST results are available for this feature:

BLAST of Csa1G004330.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXOS7_HUMAN	9.0e-52	39.22	Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3	[more]
EXOS7_MOUSE	1.3e-50	39.86	Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=1 SV=2	[more]
RRP42_METKA	1.7e-34	34.08	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]
RRP42_METTH	8.4e-34	33.07	Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai...	[more]
RRP42_THEGJ	2.1e-32	34.46	Exosome complex component Rrp42 OS=Thermococcus gammatolerans (strain DSM 15229 ...	[more]

BLAST of Csa1G004330.1 vs. TrEMBL


Match Name	E-value	Identity	Description
V4UA38_9ROSI	2.2e-129	82.87	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016158mg PE=4 SV=1	[more]
A0A151RLB1_CAJCA	8.2e-129	82.11	Exosome complex exonuclease RRP42 OS=Cajanus cajan GN=KK1_035204 PE=4 SV=1	[more]
A0A059BFR0_EUCGR	1.4e-128	81.82	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02573 PE=4 SV=1	[more]
A0A061FPE8_THECC	1.2e-127	80.07	3'-5'-exoribonuclease family protein isoform 2 OS=Theobroma cacao GN=TCM_043261 ...	[more]
A0A0B0PWL1_GOSAR	2.0e-127	80.77	Exosome complex component RRP42 OS=Gossypium arboreum GN=F383_08846 PE=4 SV=1	[more]

BLAST of Csa1G004330.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07750.1	2.2e-125	76.84	3'-5'-exoribonuclease family protein	[more]
AT3G12990.1	4.8e-27	31.52	ribonuclease PH45A	[more]
AT3G60500.1	1.8e-26	32.56	3'-5'-exoribonuclease family protein	[more]
AT1G60080.1	9.6e-20	26.18	3'-5'-exoribonuclease family protein	[more]

BLAST of Csa1G004330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655595\|ref\|XP_004151651.2\|	1.6e-154	100.00	PREDICTED: exosome complex component RRP42 [Cucumis sativus]	[more]
gi\|659081317\|ref\|XP_008441268.1\|	1.5e-147	95.10	PREDICTED: exosome complex component RRP42-like [Cucumis melo]	[more]
gi\|568830399\|ref\|XP_006469488.1\|	3.1e-129	82.87	PREDICTED: exosome complex component RRP42 isoform X1 [Citrus sinensis]	[more]
gi\|567910923\|ref\|XP_006447775.1\|	3.1e-129	82.87	hypothetical protein CICLE_v10016158mg [Citrus clementina]	[more]
gi\|1009164949\|ref\|XP_015900774.1\|	9.1e-129	82.52	PREDICTED: exosome complex component RRP42 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001247	ExoRNase_PH_dom1
IPR015847	ExoRNase_PH_dom2
IPR020568	Ribosomal_S5_D2-typ_fold
IPR027408	PNPase/RNase_PH_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000478	endonucleolytic cleavage involved in rRNA processing
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G004330	Csa1G004330	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G004330.1	Csa1G004330.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G004330.1.cds1	Csa1G004330.1.cds1	CDS
Csa1G004330.1.cds2	Csa1G004330.1.cds2	CDS
Csa1G004330.1.cds3	Csa1G004330.1.cds3	CDS
Csa1G004330.1.cds4	Csa1G004330.1.cds4	CDS
Csa1G004330.1.cds5	Csa1G004330.1.cds5	CDS
Csa1G004330.1.cds6	Csa1G004330.1.cds6	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 30..169 score: 6.0
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 200..263 score: 4.
IPR015847	Exoribonuclease, phosphorolytic domain 2	unknown	SSF55666	Ribonuclease PH domain 2-like	coord: 196..279 score: 1.66
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 209..223 score: 6.07E-45coord: 4..174 score: 6.07
IPR027408	PNPase/RNase PH domain	GENE3D	G3DSA:3.30.230.70		coord: 10..275 score: 9.
None	No IPR available	unknown	Coil	Coil	coord: 270..286 scor
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 1..286 score: 2.8E
None	No IPR available	PANTHER	PTHR11097:SF8	EXOSOME COMPLEX COMPONENT RRP42	coord: 1..286 score: 2.8E