CsGy7G016850 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G016850
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr7 : 20372776 .. 20373195 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGGGAAACTACAGCCGTCGCCGGACACAACCGCGGAGGACTCCTTGGAGGATGAGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAGTTTGAAGGAAATGCGTGATCAGCGGAGGAAGGAGTTGAATATCGGACAAGAGGAGGGGGAGGAGGAAATCGCCGCGGGGGAGAAGAGGAGGAAGAGGATGAGGGCGGCGGAAATGGTGGAGAATCGGTCTACTTGGATTCCCAAGTTTGAGAGAGAGGATTTTGATGAGGAATTTCAGGCCTTGAGTACTCTTCCCCCCAACCCTTGTTGTAATCTTGTTAAAAGAGATACCACGGCGGCATCGACGACAACAACGGCGCCGATGAAGAATAAAAAGAAAGTGAAAAATGGGGACGTTTCTTTGGATCTTAATCTCGCTCTCTAA

mRNA sequence

ATGGAAAACGGGAAACTACAGCCGTCGCCGGACACAACCGCGGAGGACTCCTTGGAGGATGAGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAGTTTGAAGGAAATGCGTGATCAGCGGAGGAAGGAGTTGAATATCGGACAAGAGGAGGGGGAGGAGGAAATCGCCGCGGGGGAGAAGAGGAGGAAGAGGATGAGGGCGGCGGAAATGGTGGAGAATCGGTCTACTTGGATTCCCAAGTTTGAGAGAGAGGATTTTGATGAGGAATTTCAGGCCTTGAGTACTCTTCCCCCCAACCCTTGTTGTAATCTTGTTAAAAGAGATACCACGGCGGCATCGACGACAACAACGGCGCCGATGAAGAATAAAAAGAAAGTGAAAAATGGGGACGTTTCTTTGGATCTTAATCTCGCTCTCTAA

Coding sequence (CDS)

ATGGAAAACGGGAAACTACAGCCGTCGCCGGACACAACCGCGGAGGACTCCTTGGAGGATGAGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAGTTTGAAGGAAATGCGTGATCAGCGGAGGAAGGAGTTGAATATCGGACAAGAGGAGGGGGAGGAGGAAATCGCCGCGGGGGAGAAGAGGAGGAAGAGGATGAGGGCGGCGGAAATGGTGGAGAATCGGTCTACTTGGATTCCCAAGTTTGAGAGAGAGGATTTTGATGAGGAATTTCAGGCCTTGAGTACTCTTCCCCCCAACCCTTGTTGTAATCTTGTTAAAAGAGATACCACGGCGGCATCGACGACAACAACGGCGCCGATGAAGAATAAAAAGAAAGTGAAAAATGGGGACGTTTCTTTGGATCTTAATCTCGCTCTCTAA

Protein sequence

MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDTTAASTTTTAPMKNKKKVKNGDVSLDLNLAL

Homology

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BLAST of CsGy7G016850 vs. NCBI nr
Match: KGN45045.1 (hypothetical protein Csa_7G414420 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK
Sbjct: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX 120
           RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX
Sbjct: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX 120

Query: 121 XXXXKVKNGDVSLDLNLAL 140
           XXXXKVKNGDVSLDLNLAL
Sbjct: 121 XXXXKVKNGDVSLDLNLAL 139

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BLAST of CsGy7G016850 vs. NCBI nr
Match: XP_022991628.1 (uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991630.1 uncharacterized protein LOC111488189 [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 8.8e-17
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MEN K QP  +T AE+   + EME+F+ALVR+ KE+RD+ RKE+  G  EG+E   A EK
Sbjct: 1   MENQKRQPPRETIAEEEXXEVEMEKFYALVRNFKEIRDRWRKEVVNG--EGDE--TAAEK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQ--ALSTLPPNPCCNLVKRDXXXXXXXXXX 120
            RKRM+  E V+N+S+WI +FEREDFDE+ Q    +   P  CC LVK D          
Sbjct: 61  TRKRMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCC-LVKED----TPVAAA 120

Query: 121 XXXXXXKVKNGDVSLDLNLAL 140
                 KV +G   LDLNL+L
Sbjct: 121 PLKKEKKVASGVDCLDLNLSL 132

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BLAST of CsGy7G016850 vs. NCBI nr
Match: XP_023514605.1 (protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1  MENGKLQPSPDTTA------EDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEE 60
          ME   L+P+    A      E+  E+ +ME FFALVR+ KEMRDQRRKEL IG +   E+
Sbjct: 1  MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCD--GEK 60

Query: 61 IAAGEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQ 92
           AA E R+++M+    VENRS WIP+FEREDFDEEFQ
Sbjct: 61 AAAAEMRKRKMKT---VENRSAWIPRFEREDFDEEFQ 92

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BLAST of CsGy7G016850 vs. NCBI nr
Match: XP_022960173.1 (protein NIM1-INTERACTING 1 [Cucurbita moschata])

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 23 MERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEKRRKRMRAAEMVENRSTWIPKFE 82
          ME FFALVR+ KEMRDQRRKEL IG +   E+ AA E R+++M+    VENRS WIP+FE
Sbjct: 32 MEAFFALVRNFKEMRDQRRKELMIGCD--GEKAAAAEMRKRKMKT---VENRSAWIPRFE 91

Query: 83 REDFDEEFQ 92
          REDFDEEFQ
Sbjct: 92 REDFDEEFQ 95

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BLAST of CsGy7G016850 vs. NCBI nr
Match: XP_023004697.1 (protein NIM1-INTERACTING 1 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-11
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 15 EDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEKRRKRMRAAEMVENR 74
          E+  E+ +ME FF LVR+ KEMRDQRRKEL I  +   E+ AA E R+K+M+    VENR
Sbjct: 22 EEKEEEMKMEAFFDLVRNFKEMRDQRRKELMIVCD--GEKAAAAEMRKKKMKT---VENR 81

Query: 75 STWIPKFEREDFDEEFQ 92
          S WIP+FEREDFDEEFQ
Sbjct: 82 SAWIPRFEREDFDEEFQ 93

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BLAST of CsGy7G016850 vs. TrEMBL
Match: tr|A0A0A0K5V7|A0A0A0K5V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK
Sbjct: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX 120
           RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX
Sbjct: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX 120

Query: 121 XXXXKVKNGDVSLDLNLAL 140
           XXXXKVKNGDVSLDLNLAL
Sbjct: 121 XXXXKVKNGDVSLDLNLAL 139

[Close]

BLAST of CsGy7G016850 vs. TrEMBL
Match: tr|A0A2P4H255|A0A2P4H255_QUESU (Protein nim1-interacting 1 OS=Quercus suber OX=58331 GN=CFP56_55167 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MEN K   + +  AE   E+ +ME+FFAL+RS +E R+ RRKEL       + ++   +K
Sbjct: 1   MENDKSFRNGE--AEQEEEEAKMEKFFALIRSFREARNYRRKEL-----MNDSQVMNNKK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDF--DEEFQALSTLPPNPCCNLVK 107
           + KR+       + S+W+PKFE EDF  + EF     + P+PC N  K
Sbjct: 61  KMKRVGG-----DHSSWVPKFEWEDFTKEVEFVRPPLIFPSPCNNKEK 96

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BLAST of CsGy7G016850 vs. TrEMBL
Match: tr|A0A067JZV4|A0A067JZV4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14079 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.4e-04
Identity = 41/141 (29.08%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MEN K+        ED  E++++E FFAL+RS +E R++R+ +  + +++         K
Sbjct: 1   MENEKVD-----NGEDEQEEQKVEEFFALIRSFQEARNRRKDQALLEEKD--------RK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEE--FQALSTLPPNPCCNLVKRDXXXXXXXXXX 120
           ++ ++R     E +++W+P FE EDF++E  F+    + P PC N               
Sbjct: 61  KKTKLRKLN-AEEQASWVPSFEWEDFNQEIQFRKSPLIYPRPCNN--------------- 111

Query: 121 XXXXXXKVKNGDVSLDLNLAL 140
                 K +  D  LDLNL L
Sbjct: 121 -QNEDKKQQEEDGGLDLNLTL 111

The following BLAST results are available for this feature:

BLAST of CsGy7G016850 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45045.1	2.1e-58	100.00	hypothetical protein Csa_7G414420 [Cucumis sativus]	[more]
XP_022991628.1	8.8e-17	46.81	uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharac...	[more]
XP_023514605.1	3.5e-13	54.64	protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022960173.1	2.9e-12	66.67	protein NIM1-INTERACTING 1 [Cucurbita moschata]	[more]
XP_023004697.1	1.9e-11	61.04	protein NIM1-INTERACTING 1 [Cucurbita maxima]	[more]

BLAST of CsGy7G016850 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G016850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G016850 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5V7\|A0A0A0K5V7_CUCSA	1.4e-58	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=4 SV=1	[more]
tr\|A0A2P4H255\|A0A2P4H255_QUESU	8.7e-05	37.96	Protein nim1-interacting 1 OS=Quercus suber OX=58331 GN=CFP56_55167 PE=4 SV=1	[more]
tr\|A0A067JZV4\|A0A067JZV4_JATCU	7.4e-04	29.08	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14079 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010112	regulation of systemic acquired resistance

Vocabulary: **INTERPRO**
Term	Definition
IPR031425	NPR1/NH1-interacting

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G016850.1	CsGy7G016850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 15..136 e-value: 3.9E-18 score: 66.0
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	FAMILY NOT NAMED	coord: 11..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G016850	Cla015169	Watermelon (97103) v1	cgybwmB530
CsGy7G016850	Csa7G414420	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G016850	MELO3C023628	Melon (DHL92) v3.5.1	cgybmeB457
CsGy7G016850	ClCG09G004800	Watermelon (Charleston Gray)	cgybwcgB486
CsGy7G016850	CSPI07G18440	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G016850	Lsi02G025040	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G016850	Cp4.1LG12g06270	Cucurbita pepo (Zucchini)	cgybcpeB906
CsGy7G016850	MELO3C023628.2	Melon (DHL92) v3.6.1	cgybmedB455
CsGy7G016850	CsaV3_7G030280	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G016850	Cla97C09G167220	Watermelon (97103) v2	cgybwmbB543
CsGy7G016850	Bhi09G000642	Wax gourd	cgybwgoB673
CsGy7G016850	Carg13402	Silver-seed gourd	carcgybB0461

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G016850	Cucurbita maxima (Rimu)	cgybcmaB911
CsGy7G016850	Cucurbita maxima (Rimu)	cgybcmaB925
CsGy7G016850	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G016850	Cucurbita moschata (Rifu)	cgybcmoB893
CsGy7G016850	Cucurbita moschata (Rifu)	cgybcmoB909
CsGy7G016850	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G016850	Cucurbita pepo (Zucchini)	cgybcpeB931
CsGy7G016850	Cucurbita pepo (Zucchini)	cgybcpeB957
CsGy7G016850	Bottle gourd (USVL1VR-Ls)	cgyblsiB483
CsGy7G016850	Watermelon (Charleston Gray)	cgybwcgB492
CsGy7G016850	Watermelon (97103) v1	cgybwmB537
CsGy7G016850	Silver-seed gourd	carcgybB0120
CsGy7G016850	Watermelon (97103) v2	cgybwmbB490
CsGy7G016850	Wax gourd	cgybwgoB618