CsGy7G016850.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G016850.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr7 : 20372776 .. 20373195 (-)
Sequence length	420

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGGGAAACTACAGCCGTCGCCGGACACAACCGCGGAGGACTCCTTGGAGGATGAGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAGTTTGAAGGAAATGCGTGATCAGCGGAGGAAGGAGTTGAATATCGGACAAGAGGAGGGGGAGGAGGAAATCGCCGCGGGGGAGAAGAGGAGGAAGAGGATGAGGGCGGCGGAAATGGTGGAGAATCGGTCTACTTGGATTCCCAAGTTTGAGAGAGAGGATTTTGATGAGGAATTTCAGGCCTTGAGTACTCTTCCCCCCAACCCTTGTTGTAATCTTGTTAAAAGAGATACCACGGCGGCATCGACGACAACAACGGCGCCGATGAAGAATAAAAAGAAAGTGAAAAATGGGGACGTTTCTTTGGATCTTAATCTCGCTCTCTAA

mRNA sequence

ATGGAAAACGGGAAACTACAGCCGTCGCCGGACACAACCGCGGAGGACTCCTTGGAGGATGAGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAGTTTGAAGGAAATGCGTGATCAGCGGAGGAAGGAGTTGAATATCGGACAAGAGGAGGGGGAGGAGGAAATCGCCGCGGGGGAGAAGAGGAGGAAGAGGATGAGGGCGGCGGAAATGGTGGAGAATCGGTCTACTTGGATTCCCAAGTTTGAGAGAGAGGATTTTGATGAGGAATTTCAGGCCTTGAGTACTCTTCCCCCCAACCCTTGTTGTAATCTTGTTAAAAGAGATACCACGGCGGCATCGACGACAACAACGGCGCCGATGAAGAATAAAAAGAAAGTGAAAAATGGGGACGTTTCTTTGGATCTTAATCTCGCTCTCTAA

Coding sequence (CDS)

ATGGAAAACGGGAAACTACAGCCGTCGCCGGACACAACCGCGGAGGACTCCTTGGAGGATGAGGAGATGGAGAGGTTTTTCGCTTTGGTGAGGAGTTTGAAGGAAATGCGTGATCAGCGGAGGAAGGAGTTGAATATCGGACAAGAGGAGGGGGAGGAGGAAATCGCCGCGGGGGAGAAGAGGAGGAAGAGGATGAGGGCGGCGGAAATGGTGGAGAATCGGTCTACTTGGATTCCCAAGTTTGAGAGAGAGGATTTTGATGAGGAATTTCAGGCCTTGAGTACTCTTCCCCCCAACCCTTGTTGTAATCTTGTTAAAAGAGATACCACGGCGGCATCGACGACAACAACGGCGCCGATGAAGAATAAAAAGAAAGTGAAAAATGGGGACGTTTCTTTGGATCTTAATCTCGCTCTCTAA

Protein sequence

MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDTTAASTTTTAPMKNKKKVKNGDVSLDLNLAL

Homology

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BLAST of CsGy7G016850.1 vs. NCBI nr
Match: KGN45045.1 (hypothetical protein Csa_7G414420 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK
Sbjct: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX 120
           RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX
Sbjct: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX 120

Query: 121 XXXXKVKNGDVSLDLNLAL 140
           XXXXKVKNGDVSLDLNLAL
Sbjct: 121 XXXXKVKNGDVSLDLNLAL 139

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BLAST of CsGy7G016850.1 vs. NCBI nr
Match: XP_022991628.1 (uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991630.1 uncharacterized protein LOC111488189 [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 8.8e-17
Identity = 66/141 (46.81%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MEN K QP  +T AE+   + EME+F+ALVR+ KE+RD+ RKE+  G  EG+E   A EK
Sbjct: 1   MENQKRQPPRETIAEEEXXEVEMEKFYALVRNFKEIRDRWRKEVVNG--EGDE--TAAEK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQ--ALSTLPPNPCCNLVKRDXXXXXXXXXX 120
            RKRM+  E V+N+S+WI +FEREDFDE+ Q    +   P  CC LVK D          
Sbjct: 61  TRKRMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCC-LVKED----TPVAAA 120

Query: 121 XXXXXXKVKNGDVSLDLNLAL 140
                 KV +G   LDLNL+L
Sbjct: 121 PLKKEKKVASGVDCLDLNLSL 132

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BLAST of CsGy7G016850.1 vs. NCBI nr
Match: XP_023514605.1 (protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-13
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1  MENGKLQPSPDTTA------EDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEE 60
          ME   L+P+    A      E+  E+ +ME FFALVR+ KEMRDQRRKEL IG +   E+
Sbjct: 1  MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCD--GEK 60

Query: 61 IAAGEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQ 92
           AA E R+++M+    VENRS WIP+FEREDFDEEFQ
Sbjct: 61 AAAAEMRKRKMKT---VENRSAWIPRFEREDFDEEFQ 92

[Close]

BLAST of CsGy7G016850.1 vs. NCBI nr
Match: XP_022960173.1 (protein NIM1-INTERACTING 1 [Cucurbita moschata])

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 23 MERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEKRRKRMRAAEMVENRSTWIPKFE 82
          ME FFALVR+ KEMRDQRRKEL IG +   E+ AA E R+++M+    VENRS WIP+FE
Sbjct: 32 MEAFFALVRNFKEMRDQRRKELMIGCD--GEKAAAAEMRKRKMKT---VENRSAWIPRFE 91

Query: 83 REDFDEEFQ 92
          REDFDEEFQ
Sbjct: 92 REDFDEEFQ 95

[Close]

BLAST of CsGy7G016850.1 vs. NCBI nr
Match: XP_023004697.1 (protein NIM1-INTERACTING 1 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-11
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 15 EDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEKRRKRMRAAEMVENR 74
          E+  E+ +ME FF LVR+ KEMRDQRRKEL I  +   E+ AA E R+K+M+    VENR
Sbjct: 22 EEKEEEMKMEAFFDLVRNFKEMRDQRRKELMIVCD--GEKAAAAEMRKKKMKT---VENR 81

Query: 75 STWIPKFEREDFDEEFQ 92
          S WIP+FEREDFDEEFQ
Sbjct: 82 SAWIPRFEREDFDEEFQ 93

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BLAST of CsGy7G016850.1 vs. TrEMBL
Match: tr|A0A0A0K5V7|A0A0A0K5V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-58
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK
Sbjct: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX 120
           RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX
Sbjct: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDXXXXXXXXXXXX 120

Query: 121 XXXXKVKNGDVSLDLNLAL 140
           XXXXKVKNGDVSLDLNLAL
Sbjct: 121 XXXXKVKNGDVSLDLNLAL 139

[Close]

BLAST of CsGy7G016850.1 vs. TrEMBL
Match: tr|A0A2P4H255|A0A2P4H255_QUESU (Protein nim1-interacting 1 OS=Quercus suber OX=58331 GN=CFP56_55167 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MEN K   + +  AE   E+ +ME+FFAL+RS +E R+ RRKEL       + ++   +K
Sbjct: 1   MENDKSFRNGE--AEQEEEEAKMEKFFALIRSFREARNYRRKEL-----MNDSQVMNNKK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDF--DEEFQALSTLPPNPCCNLVK 107
           + KR+       + S+W+PKFE EDF  + EF     + P+PC N  K
Sbjct: 61  KMKRVGG-----DHSSWVPKFEWEDFTKEVEFVRPPLIFPSPCNNKEK 96

[Close]

BLAST of CsGy7G016850.1 vs. TrEMBL
Match: tr|A0A067JZV4|A0A067JZV4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14079 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.4e-04
Identity = 41/141 (29.08%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 1   MENGKLQPSPDTTAEDSLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAAGEK 60
           MEN K+        ED  E++++E FFAL+RS +E R++R+ +  + +++         K
Sbjct: 1   MENEKVD-----NGEDEQEEQKVEEFFALIRSFQEARNRRKDQALLEEKD--------RK 60

Query: 61  RRKRMRAAEMVENRSTWIPKFEREDFDEE--FQALSTLPPNPCCNLVKRDXXXXXXXXXX 120
           ++ ++R     E +++W+P FE EDF++E  F+    + P PC N               
Sbjct: 61  KKTKLRKLN-AEEQASWVPSFEWEDFNQEIQFRKSPLIYPRPCNN--------------- 111

Query: 121 XXXXXXKVKNGDVSLDLNLAL 140
                 K +  D  LDLNL L
Sbjct: 121 -QNEDKKQQEEDGGLDLNLTL 111

The following BLAST results are available for this feature:

BLAST of CsGy7G016850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45045.1	2.1e-58	100.00	hypothetical protein Csa_7G414420 [Cucumis sativus]	[more]
XP_022991628.1	8.8e-17	46.81	uncharacterized protein LOC111488189 [Cucurbita maxima] >XP_022991629.1 uncharac...	[more]
XP_023514605.1	3.5e-13	54.64	protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022960173.1	2.9e-12	66.67	protein NIM1-INTERACTING 1 [Cucurbita moschata]	[more]
XP_023004697.1	1.9e-11	61.04	protein NIM1-INTERACTING 1 [Cucurbita maxima]	[more]

BLAST of CsGy7G016850.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G016850.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G016850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5V7\|A0A0A0K5V7_CUCSA	1.4e-58	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=4 SV=1	[more]
tr\|A0A2P4H255\|A0A2P4H255_QUESU	8.7e-05	37.96	Protein nim1-interacting 1 OS=Quercus suber OX=58331 GN=CFP56_55167 PE=4 SV=1	[more]
tr\|A0A067JZV4\|A0A067JZV4_JATCU	7.4e-04	29.08	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14079 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0010112	regulation of systemic acquired resistance

Vocabulary: **INTERPRO**
Term	Definition
IPR031425	NPR1/NH1-interacting

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G016850	CsGy7G016850	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G016850.1.CDS.1	CsGy7G016850.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G016850.1	CsGy7G016850.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 15..136 e-value: 3.9E-18 score: 66.0
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	FAMILY NOT NAMED	coord: 11..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22