Cp4.1LG12g06270 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g06270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG12 : 7620581 .. 7620994 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATCAGAAGCGGCAGCCGCCGCGGGGGACAATCGCCGAGGAGGAGGAGGCGGAGGCGGAGGAGGAGGTGGAGATGGAGACGTTTTATGCTCTGGTGAGAAATTTTAAGGAAATACGTGATCGGTGTAGGAAGGAGGTGGTGAACGGCGAGGGCGGTGAAACGGCGGCGGAGAAAACGAGGAAGAGGATGAAGACGACGGAAACGTCGCAGAATCAGTCGAGTTGGATTTTGAGGTTCGAGAGAGAGGATTTCGATGAGGATTTACAAGTCGGAGGAACGGCTGTGGAGCTTCCGAAGCGTTGTTGTCTTGTTAAAGAAGACACTCCGGTGGCGGCGCCGCCGTCGATGAAGAAGGAAAAGAAAGTGGCAAGTGGAGTTGATTGTTTGGATCTTAATTTGTCACTCTAG

mRNA sequence

ATGGAAAATCAGAAGCGGCAGCCGCCGCGGGGGACAATCGCCGAGGAGGAGGAGGCGGAGGCGGAGGAGGAGGTGGAGATGGAGACGTTTTATGCTCTGGTGAGAAATTTTAAGGAAATACGTGATCGGTGTAGGAAGGAGGTGGTGAACGGCGAGGGCGGTGAAACGGCGGCGGAGAAAACGAGGAAGAGGATGAAGACGACGGAAACGTCGCAGAATCAGTCGAGTTGGATTTTGAGGTTCGAGAGAGAGGATTTCGATGAGGATTTACAAGTCGGAGGAACGGCTGTGGAGCTTCCGAAGCGTTGTTGTCTTGTTAAAGAAGACACTCCGGTGGCGGCGCCGCCGTCGATGAAGAAGGAAAAGAAAGTGGCAAGTGGAGTTGATTGTTTGGATCTTAATTTGTCACTCTAG

Coding sequence (CDS)

ATGGAAAATCAGAAGCGGCAGCCGCCGCGGGGGACAATCGCCGAGGAGGAGGAGGCGGAGGCGGAGGAGGAGGTGGAGATGGAGACGTTTTATGCTCTGGTGAGAAATTTTAAGGAAATACGTGATCGGTGTAGGAAGGAGGTGGTGAACGGCGAGGGCGGTGAAACGGCGGCGGAGAAAACGAGGAAGAGGATGAAGACGACGGAAACGTCGCAGAATCAGTCGAGTTGGATTTTGAGGTTCGAGAGAGAGGATTTCGATGAGGATTTACAAGTCGGAGGAACGGCTGTGGAGCTTCCGAAGCGTTGTTGTCTTGTTAAAGAAGACACTCCGGTGGCGGCGCCGCCGTCGATGAAGAAGGAAAAGAAAGTGGCAAGTGGAGTTGATTGTTTGGATCTTAATTTGTCACTCTAG

Protein sequence

MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEKTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKKEKKVASGVDCLDLNLSL

Homology

[Close]

BLAST of Cp4.1LG12g06270 vs. TrEMBL
Match: A0A0A0K5V7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414420 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 1


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEV-VNGEGGE---T 60
           MEN K QP   T AE+    + E+ EME F+ALVR+ KE+RD+ RKE+ +  E GE    
Sbjct: 1   MENGKLQPSPDTTAED----SLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIA 60

Query: 61  AAEKTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCC-LVKEDTPVAAP 120
           A EK RKRM+  E  +N+S+WI +FEREDFDE+ Q   T    P  CC LVK DT  A+ 
Sbjct: 61  AGEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLP--PNPCCNLVKRDTTAAST 120

Query: 121 PS---MKKEKKVASGVDCLDLNLSL 138
            +   MK +KKV +G   LDLNL+L
Sbjct: 121 TTTAPMKNKKKVKNGDVSLDLNLAL 139

[Close]

BLAST of Cp4.1LG12g06270 vs. TrEMBL
Match: A0A151TXE2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_011019 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 53/137 (38.69%), Postives = 68/137 (49.64%), Query Frame = 1


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60
           MEN+KR         EE  E EEE EM+ FY L+R F+E RDR RKE+         AE+
Sbjct: 1   MENKKR---------EEVVEEEEEEEMKEFYMLLRRFREARDRRRKEL-------EEAEE 60

Query: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK 120
            +KR   T +S + + W+  F+ EDF  D+Q  GT    P         +P  +PPS   
Sbjct: 61  NKKRKLRTTSSTSVNVWMPSFQWEDFTNDVQFRGTPPS-PS-----PSPSPSPSPPSHSP 110

Query: 121 EKKVASGVDCLDLNLSL 138
            K        LDLNLSL
Sbjct: 121 HKH-----HSLDLNLSL 110

[Close]

BLAST of Cp4.1LG12g06270 vs. NCBI nr
Match: gi|700189812|gb|KGN45045.1| (hypothetical protein Csa_7G414420 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-18
Identity = 71/145 (48.97%), Postives = 91/145 (62.76%), Query Frame = 1


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEV-VNGEGGE---T 60
           MEN K QP   T AE+    + E+ EME F+ALVR+ KE+RD+ RKE+ +  E GE    
Sbjct: 1   MENGKLQPSPDTTAED----SLEDEEMERFFALVRSLKEMRDQRRKELNIGQEEGEEEIA 60

Query: 61  AAEKTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCC-LVKEDTPVAAP 120
           A EK RKRM+  E  +N+S+WI +FEREDFDE+ Q   T    P  CC LVK DT  A+ 
Sbjct: 61  AGEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLP--PNPCCNLVKRDTTAAST 120

Query: 121 PS---MKKEKKVASGVDCLDLNLSL 138
            +   MK +KKV +G   LDLNL+L
Sbjct: 121 TTTAPMKNKKKVKNGDVSLDLNLAL 139

[Close]

BLAST of Cp4.1LG12g06270 vs. NCBI nr
Match: gi|1012360565|gb|KYP71749.1| (hypothetical protein KK1_011019 [Cajanus cajan])

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 53/137 (38.69%), Postives = 68/137 (49.64%), Query Frame = 1


Query: 1   MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGETAAEK 60
           MEN+KR         EE  E EEE EM+ FY L+R F+E RDR RKE+         AE+
Sbjct: 1   MENKKR---------EEVVEEEEEEEMKEFYMLLRRFREARDRRRKEL-------EEAEE 60

Query: 61  TRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMKK 120
            +KR   T +S + + W+  F+ EDF  D+Q  GT    P         +P  +PPS   
Sbjct: 61  NKKRKLRTTSSTSVNVWMPSFQWEDFTNDVQFRGTPPS-PS-----PSPSPSPSPPSHSP 110

Query: 121 EKKVASGVDCLDLNLSL 138
            K        LDLNLSL
Sbjct: 121 HKH-----HSLDLNLSL 110

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g06270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g06270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5V7_CUCSA	1.7e-18	48.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G414420 PE=4 SV=1	[more]
A0A151TXE2_CAJCA	1.4e-06	38.69	Uncharacterized protein OS=Cajanus cajan GN=KK1_011019 PE=4 SV=1	[more]

BLAST of Cp4.1LG12g06270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g06270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189812\|gb\|KGN45045.1\|	2.4e-18	48.97	hypothetical protein Csa_7G414420 [Cucumis sativus]	[more]
gi\|1012360565\|gb\|KYP71749.1\|	2.1e-06	38.69	hypothetical protein KK1_011019 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010112	regulation of systemic acquired resistance

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g06270.1	Cp4.1LG12g06270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
No results

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g06270	Cucsa.128580	Cucumber (Gy14) v1	cgycpeB0334
Cp4.1LG12g06270	Cla015169	Watermelon (97103) v1	cpewmB131
Cp4.1LG12g06270	Csa7G414420	Cucumber (Chinese Long) v2	cpecuB161
Cp4.1LG12g06270	MELO3C023628	Melon (DHL92) v3.5.1	cpemeB123
Cp4.1LG12g06270	ClCG09G004800	Watermelon (Charleston Gray)	cpewcgB126
Cp4.1LG12g06270	CSPI07G18440	Wild cucumber (PI 183967)	cpecpiB163
Cp4.1LG12g06270	Lsi02G025040	Bottle gourd (USVL1VR-Ls)	cpelsiB113
Cp4.1LG12g06270	MELO3C023628.2	Melon (DHL92) v3.6.1	cpemedB150
Cp4.1LG12g06270	CsaV3_7G030280	Cucumber (Chinese Long) v3	cpecucB0188
Cp4.1LG12g06270	Bhi09G000642	Wax gourd	cpewgoB0201
Cp4.1LG12g06270	CsGy7G016850	Cucumber (Gy14) v2	cgybcpeB906
Cp4.1LG12g06270	Carg13402	Silver-seed gourd	carcpeB0631

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG12g06270	Cp4.1LG17g07660	Cucurbita pepo (Zucchini)	cpecpeB157

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g06270	Silver-seed gourd	carcpeB0158
Cp4.1LG12g06270	Silver-seed gourd	carcpeB1070
Cp4.1LG12g06270	Silver-seed gourd	carcpeB1143
Cp4.1LG12g06270	Wax gourd	cpewgoB0171
Cp4.1LG12g06270	Cucurbita pepo (Zucchini)	cpecpeB181
Cp4.1LG12g06270	Cucurbita pepo (Zucchini)	cpecpeB185
Cp4.1LG12g06270	Cucumber (Gy14) v1	cgycpeB0185
Cp4.1LG12g06270	Cucurbita maxima (Rimu)	cmacpeB260
Cp4.1LG12g06270	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g06270	Cucurbita maxima (Rimu)	cmacpeB465
Cp4.1LG12g06270	Cucurbita maxima (Rimu)	cmacpeB902
Cp4.1LG12g06270	Cucurbita moschata (Rifu)	cmocpeB224
Cp4.1LG12g06270	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g06270	Cucurbita moschata (Rifu)	cmocpeB425
Cp4.1LG12g06270	Cucurbita moschata (Rifu)	cmocpeB839
Cp4.1LG12g06270	Bottle gourd (USVL1VR-Ls)	cpelsiB116
Cp4.1LG12g06270	Watermelon (Charleston Gray)	cpewcgB134
Cp4.1LG12g06270	Watermelon (97103) v1	cpewmB139
Cp4.1LG12g06270	Watermelon (97103) v1	cpewmB141