CsGy7G003810 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G003810
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transcription factor WER-like
Location	Chr7 : 2900207 .. 2900470 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAACGGCTGTAGAGATCAGTGAGCAAATTGAGAGTATCGTTGAATCACCAACCGCCGGACATTATATGGACATGGAGCTGGTGGATGAGAGGCTGCCGGAGAGTTGCACCGGTGATTTTTGGACAGACCCTTTATGGATGGACAATTCTTTTGAGATGGCATTTGATAATTATCAACATCAAGGCCTTGGTGAATCCATTAATCTTTTGAATTTGGGGTTGGATCAATATCTTTTGCAAGAGGGCATATACTTGTAG

mRNA sequence

ATGGATCCAACGGCTGTAGAGATCAGTGAGCAAATTGAGAGTATCGTTGAATCACCAACCGCCGGACATTATATGGACATGGAGCTGGTGGATGAGAGGCTGCCGGAGAGTTGCACCGGTGATTTTTGGACAGACCCTTTATGGATGGACAATTCTTTTGAGATGGCATTTGATAATTATCAACATCAAGGCCTTGGTGAATCCATTAATCTTTTGAATTTGGGGTTGGATCAATATCTTTTGCAAGAGGGCATATACTTGTAG

Coding sequence (CDS)

ATGGATCCAACGGCTGTAGAGATCAGTGAGCAAATTGAGAGTATCGTTGAATCACCAACCGCCGGACATTATATGGACATGGAGCTGGTGGATGAGAGGCTGCCGGAGAGTTGCACCGGTGATTTTTGGACAGACCCTTTATGGATGGACAATTCTTTTGAGATGGCATTTGATAATTATCAACATCAAGGCCTTGGTGAATCCATTAATCTTTTGAATTTGGGGTTGGATCAATATCTTTTGCAAGAGGGCATATACTTGTAG

Protein sequence

MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNYQHQGLGESINLLNLGLDQYLLQEGIYL

Homology

[Close]

BLAST of CsGy7G003810 vs. NCBI nr
Match: XP_004144570.1 (PREDICTED: transcription factor WER-like [Cucumis sativus] >KGN43570.1 hypothetical protein Csa_7G045590 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 4.5e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNY 60
           MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNY
Sbjct: 168 MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNY 227

Query: 61  QHQGLGESINLLNLGLDQYLLQEGIYL 88
           QHQGLGESINLLNLGLDQYLLQEGIYL
Sbjct: 228 QHQGLGESINLLNLGLDQYLLQEGIYL 254

[Close]

BLAST of CsGy7G003810 vs. NCBI nr
Match: XP_008455366.1 (PREDICTED: transcription factor WER-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1   MDPTAVEISEQIESIVESPTAG-HYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDN 60
           M+PT VEISEQIES VESPTAG +YMDMELVDERLPESCTGDFWTDPLWMDNSF+MAFD 
Sbjct: 167 MNPTTVEISEQIESNVESPTAGKYYMDMELVDERLPESCTGDFWTDPLWMDNSFDMAFD- 226

Query: 61  YQHQGLGESINLLNLGLDQYLLQEGIY 87
           YQ+QGLG+SIN+LNLGLD+YLLQEGIY
Sbjct: 227 YQYQGLGDSINVLNLGLDEYLLQEGIY 252

[Close]

BLAST of CsGy7G003810 vs. NCBI nr
Match: XP_022988914.1 (transcription factor MYB4-like [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-12
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNY 60
           +D TA+E S  I++I E+PTAG+ +DM   ++R P S +GDFWTDPLW+D+ F++ FD Y
Sbjct: 169 IDSTALE-SVLIQTI-ETPTAGN-IDMLPANDRPPVSSSGDFWTDPLWLDSDFDLPFD-Y 228

Query: 61  QHQGLGESINLLNLGLDQYLLQEGIY 87
           Q+QGLGE I +   GLD+Y+ QE +Y
Sbjct: 229 QYQGLGEPI-VSKFGLDEYIFQEELY 249

[Close]

BLAST of CsGy7G003810 vs. NCBI nr
Match: XP_022930883.1 (transcription factor MYB8-like [Cucurbita moschata])

HSP 1 Score: 76.3 bits (186), Expect = 5.9e-11
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 1   MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNY 60
           +D TA+E S  I++I E+PTAG+ MDM   ++R P S +GDFWTDPLW+D+ F++ FD  
Sbjct: 166 VDSTALE-SALIQTI-ETPTAGN-MDMLPANDRPPLSSSGDFWTDPLWLDSDFDLPFD-- 225

Query: 61  QHQGLGESINLLNLGLDQYLLQEGIY 87
            +QGLGE I     GLD+Y+ QE +Y
Sbjct: 226 -YQGLGEPI-FSKFGLDEYIFQEELY 244

[Close]

BLAST of CsGy7G003810 vs. NCBI nr
Match: XP_022135704.1 (transcription factor MYB23-like [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 1   MDPTAVEISEQIESIVESPTAGHYMDM-----------ELVDERLPESCTGDFWTDPLWM 60
           +D TAVEIS    ++ + P AG+ MD+           EL     P S  GDFWTDPLW+
Sbjct: 159 IDQTAVEIS----ALEDLPPAGN-MDVAADDQFKSSTPELPAGSSPASSAGDFWTDPLWL 218

Query: 61  DNSFEMAFD-NYQHQGLGESINLLNLGLDQYLLQEGIY 87
           D++ +M FD    +QG GES N    GLD+YL QEGIY
Sbjct: 219 DSNLDMPFDEQLSYQGFGES-NFFTFGLDEYLWQEGIY 250

[Close]

BLAST of CsGy7G003810 vs. TrEMBL
Match: tr|A0A0A0K1Q0|A0A0A0K1Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045590 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.0e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNY 60
           MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNY
Sbjct: 168 MDPTAVEISEQIESIVESPTAGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNY 227

Query: 61  QHQGLGESINLLNLGLDQYLLQEGIYL 88
           QHQGLGESINLLNLGLDQYLLQEGIYL
Sbjct: 228 QHQGLGESINLLNLGLDQYLLQEGIYL 254

[Close]

BLAST of CsGy7G003810 vs. TrEMBL
Match: tr|A0A1S3C0W1|A0A1S3C0W1_CUCME (transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103495552 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.6e-35
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1   MDPTAVEISEQIESIVESPTAG-HYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDN 60
           M+PT VEISEQIES VESPTAG +YMDMELVDERLPESCTGDFWTDPLWMDNSF+MAFD 
Sbjct: 167 MNPTTVEISEQIESNVESPTAGKYYMDMELVDERLPESCTGDFWTDPLWMDNSFDMAFD- 226

Query: 61  YQHQGLGESINLLNLGLDQYLLQEGIY 87
           YQ+QGLG+SIN+LNLGLD+YLLQEGIY
Sbjct: 227 YQYQGLGDSINVLNLGLDEYLLQEGIY 252

The following BLAST results are available for this feature:

BLAST of CsGy7G003810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144570.1	4.5e-43	100.00	PREDICTED: transcription factor WER-like [Cucumis sativus] >KGN43570.1 hypotheti...	[more]
XP_008455366.1	1.3e-34	87.36	PREDICTED: transcription factor WER-like [Cucumis melo]	[more]
XP_022988914.1	3.1e-12	52.33	transcription factor MYB4-like [Cucurbita maxima]	[more]
XP_022930883.1	5.9e-11	51.16	transcription factor MYB8-like [Cucurbita moschata]	[more]
XP_022135704.1	1.5e-09	45.92	transcription factor MYB23-like [Momordica charantia]	[more]

BLAST of CsGy7G003810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G003810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G003810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K1Q0\|A0A0A0K1Q0_CUCSA	3.0e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045590 PE=4 SV=1	[more]
tr\|A0A1S3C0W1\|A0A1S3C0W1_CUCME	8.6e-35	87.36	transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103495552 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G003810.1	CsGy7G003810.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G003810	ClCG02G001420	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G003810	Cp4.1LG04g03320	Cucurbita pepo (Zucchini)	cgybcpeB964
CsGy7G003810	MELO3C028644.2	Melon (DHL92) v3.6.1	cgybmedB465
CsGy7G003810	CsaV3_7G004030	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G003810	Cla97C02G027870	Watermelon (97103) v2	cgybwmbB502
CsGy7G003810	Bhi05G001559	Wax gourd	cgybwgoB633
CsGy7G003810	Carg19094	Silver-seed gourd	carcgybB0717

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G003810	Wax gourd	cgybwgoB655
CsGy7G003810	Bottle gourd (USVL1VR-Ls)	cgyblsiB457
CsGy7G003810	Cucumber (Gy14) v2	cgybcgybB153
CsGy7G003810	Cucurbita maxima (Rimu)	cgybcmaB896
CsGy7G003810	Cucurbita maxima (Rimu)	cgybcmaB909
CsGy7G003810	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G003810	Cucurbita maxima (Rimu)	cgybcmaB960
CsGy7G003810	Cucurbita moschata (Rifu)	cgybcmoB877
CsGy7G003810	Cucurbita moschata (Rifu)	cgybcmoB892
CsGy7G003810	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G003810	Cucurbita moschata (Rifu)	cgybcmoB943
CsGy7G003810	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G003810	Cucurbita pepo (Zucchini)	cgybcpeB973
CsGy7G003810	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G003810	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G003810	Melon (DHL92) v3.5.1	cgybmeB468
CsGy7G003810	Watermelon (Charleston Gray)	cgybwcgB497
CsGy7G003810	Watermelon (97103) v1	cgybwmB558
CsGy7G003810	Wild cucumber (PI 183967)	cgybcpiB299
CsGy7G003810	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G003810	Silver-seed gourd	carcgybB0032
CsGy7G003810	Silver-seed gourd	carcgybB0641
CsGy7G003810	Silver-seed gourd	carcgybB0864
CsGy7G003810	Cucumber (Chinese Long) v3	cgybcucB311