Cp4.1LG04g03320 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG04g03320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 7301227 .. 7301586 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAACAAACCACCACCACCACCGTCACCGCCGCTGCCGCCGGCGACAAAAAGTCCAATTCACGAAGGGTTTTCCGGTGAGAGTTTGAGCTCAAACGACAATTCCACTCTCATTGTTAATTCAACGGCTCTAGAGAGTGTACTAATTCAGACCATTGAAACGTCGACCGCCGGAAATATCGACATGCTGCCTGCGAATGATCGCCCGCCGGTGAGTTCCACCGGCGATTTTTGGACCGACCCTTTATGGCTGGACTCCGATTTTGACCTGCCATTTGATTATCATCAAGACCTCGAAGAACCCATCTTTCCCAAATTTGGATTAGATGAATATATTTTTCAAGAAGAATTATATTAA

mRNA sequence

ATGGCAAACAAACCACCACCACCACCGTCACCGCCGCTGCCGCCGGCGACAAAAAGTCCAATTCACGAAGGGTTTTCCGGTGAGAGTTTGAGCTCAAACGACAATTCCACTCTCATTGTTAATTCAACGGCTCTAGAGAGTGTACTAATTCAGACCATTGAAACGTCGACCGCCGGAAATATCGACATGCTGCCTGCGAATGATCGCCCGCCGGTGAGTTCCACCGGCGATTTTTGGACCGACCCTTTATGGCTGGACTCCGATTTTGACCTGCCATTTGATTATCATCAAGACCTCGAAGAACCCATCTTTCCCAAATTTGGATTAGATGAATATATTTTTCAAGAAGAATTATATTAA

Coding sequence (CDS)

ATGGCAAACAAACCACCACCACCACCGTCACCGCCGCTGCCGCCGGCGACAAAAAGTCCAATTCACGAAGGGTTTTCCGGTGAGAGTTTGAGCTCAAACGACAATTCCACTCTCATTGTTAATTCAACGGCTCTAGAGAGTGTACTAATTCAGACCATTGAAACGTCGACCGCCGGAAATATCGACATGCTGCCTGCGAATGATCGCCCGCCGGTGAGTTCCACCGGCGATTTTTGGACCGACCCTTTATGGCTGGACTCCGATTTTGACCTGCCATTTGATTATCATCAAGACCTCGAAGAACCCATCTTTCCCAAATTTGGATTAGATGAATATATTTTTCAAGAAGAATTATATTAA

Protein sequence

MANKPPPPPSPPLPPATKSPIHEGFSGESLSSNDNSTLIVNSTALESVLIQTIETSTAGNIDMLPANDRPPVSSTGDFWTDPLWLDSDFDLPFDYHQDLEEPIFPKFGLDEYIFQEELY
BLAST of Cp4.1LG04g03320 vs. TrEMBL
Match: A0A0A0K1Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045590 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-13
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 1

Query: 1   MANKPPPPPSPPLPPATKSPI-HEGFSGESLSSNDNSTLIVNSTALE-SVLIQTI-ETST 60
           +ANK P PP+     A  +PI H+ FS E   SN+NSTLI++ TA+E S  I++I E+ T
Sbjct: 131 LANKQPLPPATA---AETNPIDHDVFSREIERSNNNSTLIMDPTAVEISEQIESIVESPT 190

Query: 61  AGN-IDMLPANDRPPVSSTGDFWTDPLWLDSDFDLPFD--YHQDLEEPI-FPKFGLDEYI 120
           AG+ +DM   ++R P S TGDFWTDPLW+D+ F++ FD   HQ L E I     GLD+Y+
Sbjct: 191 AGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNYQHQGLGESINLLNLGLDQYL 250

BLAST of Cp4.1LG04g03320 vs. NCBI nr
Match: gi|659110701|ref|XP_008455366.1| (PREDICTED: transcription repressor MYB6-like [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 9.6e-16
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 1

Query: 1   MANKPPPPPSPPLPPATK-SPIHEGFSGESLSSNDNSTLIVNSTALE--SVLIQTIETST 60
           +ANKPP PP    P AT+ +PIH+ FS E   SN+NSTLI+N T +E    +   +E+ T
Sbjct: 131 LANKPPLPP----PTATQINPIHKVFSMEIERSNNNSTLIMNPTTVEISEQIESNVESPT 190

Query: 61  AGN--IDMLPANDRPPVSSTGDFWTDPLWLDSDFDLPFDY-HQDLEEPI-FPKFGLDEYI 120
           AG   +DM   ++R P S TGDFWTDPLW+D+ FD+ FDY +Q L + I     GLDEY+
Sbjct: 191 AGKYYMDMELVDERLPESCTGDFWTDPLWMDNSFDMAFDYQYQGLGDSINVLNLGLDEYL 250

BLAST of Cp4.1LG04g03320 vs. NCBI nr
Match: gi|449453652|ref|XP_004144570.1| (PREDICTED: transcription factor WER-like [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 7.6e-13
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 1

Query: 1   MANKPPPPPSPPLPPATKSPI-HEGFSGESLSSNDNSTLIVNSTALE-SVLIQTI-ETST 60
           +ANK P PP+     A  +PI H+ FS E   SN+NSTLI++ TA+E S  I++I E+ T
Sbjct: 131 LANKQPLPPATA---AETNPIDHDVFSREIERSNNNSTLIMDPTAVEISEQIESIVESPT 190

Query: 61  AGN-IDMLPANDRPPVSSTGDFWTDPLWLDSDFDLPFD--YHQDLEEPI-FPKFGLDEYI 120
           AG+ +DM   ++R P S TGDFWTDPLW+D+ F++ FD   HQ L E I     GLD+Y+
Sbjct: 191 AGHYMDMELVDERLPESCTGDFWTDPLWMDNSFEMAFDNYQHQGLGESINLLNLGLDQYL 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1Q0_CUCSA5.3e-1348.41Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659110701|ref|XP_008455366.1|9.6e-1649.21PREDICTED: transcription repressor MYB6-like [Cucumis melo][more]
gi|449453652|ref|XP_004144570.1|7.6e-1348.41PREDICTED: transcription factor WER-like [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03320.1Cp4.1LG04g03320.1mRNA


The following gene(s) are paralogous to this gene:

None