CsGy6G028930 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G028930
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontranscription factor bHLH18-like
LocationChr6 : 27679658 .. 27681961 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAACTCTCTCACTCTTCTGCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCACAAACTCCAAATTCAATTTCATCATATATAAAGTTTCATTTCAACTTTCTAAGTTTTTAGCCTCTTTTATTCATTCAAATTTATTCTCCACTGACTTTATTCTTTTGTTAATTGATTTATGCAGCTCATAGATCCTGATAAATTAAACCAAAGTTCATCAAATTTCCCCCATGGAAATCTCATCTGCAAAATGGCTGTCTGAAATGGTAAAAGAAAACAGAACTTTTTTACTCTTTCCTTTTTTGCACAAATTAATTATGGGGAAAAAAATCTGATTTTTCTTGTTGGGTTTATGGTAATTTCAATTAGGAACTGGAATCTTCATTCATGAATGATTTGGAAATGAACCCTTTTGAGTGCACACTAGAGGAGTTGAGTAGTTTCCAAACATTCTCCGACGAAAGCTACACATCCCACGTAGATCTAGACAATAGTTCTGTACAAACTCCGGCAGCACCGCCACCAGCAAAGCAGGCGAGGACCAGCAGCGGCTCAAGCCGTAGAATTTCTTCGATGGCGACTTCTTCTTCCTCGTCCCAAATCATTTCATTTGGGAACATTGAGATGTCCCCAATGGTTGCTCAACCTTCATATGACAACAACAACAACAACAATAAAACTTCAAATTATTATTGTTCACCAAATAAAAATCATGGGGTTGGAATCAAAAGGTCTGCTGCTGCAGCTATGAATAGTAATAATCGCAGCCCTTTGGTTGCTCAAGATCATGTCTTAGCTGAAAGAAAGCGTAGAGAAAAGCTTAGCCAGCGATTTGTTGCTCTTTCGGCCCTTATTCCAGATCTTAAAAAGGTGACATTTATGTTCCTTATATCCTAATTAAATTTCTCTTCTTTATTATTATGCAAAAAAATTAAATTGTTTTCATGTATTCGTTTATTATTTTACAATCCACGGGTACACAAGTTGGCTACCTGCATCCGATCATTGCTCTTCCTTGAATTAGTAGTAACTGACGTTAAATCACACAAATCAACTTAAAAGCATATACTAGTATGGTTTAATTATCAATGTTTCAACAATTGGTTGTATATATCAAAAGTTAATGTTTCAAATTAGATCAAAGTTTACTATGAAAAATTTTACCTTGACGTTCAAATTCCACATTTTCCATTTGCTTTCAAGAAACATATAGAACCATTCAGCCTAAAATTAAAGTTTATGTGTGTGAAGATTTAAGTTTTTGTTCCTCTATTTCTTGCTATCCTTTTTTAGAAAAGAAAAAAAAATTAAGCTTTTTAATATATTCAAATTCTCAATAGTTGCAATGATTTTTTTTTGGTACTAGATGGATAAAGCTTCCATTCTTGGGGATGCAATAACATACATCAAAGATCTTCAAGAACGTTTGAAGGTTGCAAACGAACAAGCAGCCAAAGCAACAGTGGAATCCGTGGTGTTTGTGAACAAATCTGACGATGCCTCTACCATCATCGCCAGTGACGATTCCTCAGAGGAAAACAGCTCCTCGTCGTCAGACGGAGCGATTCCGGACGTAGAAGCAAGAGTGTCTGGAAAGGATGTCCTTTTGAGGATTCATGGCAAGAAATGCAAAGGCTGTCTTTCAAATATACTAAATCAAATAGAGAAACTTAATCTCACAGTTCTCAACTCTAGTGCTTTGCCATTTGGCAATTTCAGGCTTGATATAACAATTATTGCTCAGGTACTTAATACAAATTTTTTTTATTTTTCATTTTTTATAATTTTGTGGATATTGAGGTTTACGGGACTAATTTGATTTTATTAATTATATAATTTGCAGATGGATGACGATTTTTCCATGACAGTGAAGGAACTAGTGCAGAAACTAAGACAAGCTTCTCTTGAATTTATGTAAACTTACAAATGACGTAATTAATCCTTAATTTTAGAGATAATAAAGCCTTGTGGAATCCCTAATTAAGGTTTTTTTTTTCTCTTTTGCTTTCCTTTTAGAAATTTTTGCGTGGGGCAAATCTTTGACCACGTTAAGGAAATTTAGGAAAAGAAAAACAACCACATGTGCTGTAAATCAAGCTTTGTTTTTCCCCCTCTTTTAAGATTACTTTTGATTCCAATTTTTTGGGGGTGTCTTCTTTTGCACTTGGATCTAAAATCTTTATGTAAGATTTCGTTTATTGGATTAATTAACTTTTGTTGTAATAATTGTGAAGATCTTACAACTAATTCTATAGATCTGACAGCTCCAATACAACATATAAATTAAAACAAAAACTAATTAGAG

mRNA sequence

TTCAACTCTCTCACTCTTCTGCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCACAAACTCCAAATTCAATTTCATCATATATAAAGTTTCATTTCAACTTTCTAAGTTTTTAGCCTCTTTTATTCATTCAAATTTATTCTCCACTGACTTTATTCTTTTGTTAATTGATTTATGCAGCTCATAGATCCTGATAAATTAAACCAAAGTTCATCAAATTTCCCCCATGGAAATCTCATCTGCAAAATGGCTGTCTGAAATGGAACTGGAATCTTCATTCATGAATGATTTGGAAATGAACCCTTTTGAGTGCACACTAGAGGAGTTGAGTAGTTTCCAAACATTCTCCGACGAAAGCTACACATCCCACGTAGATCTAGACAATAGTTCTGTACAAACTCCGGCAGCACCGCCACCAGCAAAGCAGGCGAGGACCAGCAGCGGCTCAAGCCGTAGAATTTCTTCGATGGCGACTTCTTCTTCCTCGTCCCAAATCATTTCATTTGGGAACATTGAGATGTCCCCAATGGTTGCTCAACCTTCATATGACAACAACAACAACAACAATAAAACTTCAAATTATTATTGTTCACCAAATAAAAATCATGGGGTTGGAATCAAAAGGTCTGCTGCTGCAGCTATGAATAGTAATAATCGCAGCCCTTTGGTTGCTCAAGATCATGTCTTAGCTGAAAGAAAGCGTAGAGAAAAGCTTAGCCAGCGATTTGTTGCTCTTTCGGCCCTTATTCCAGATCTTAAAAAGGTGACATTTATGTTCCTTATATCCTAATTAAATTTCTCTTCTTTATTATTATGCAAAAAAATTAAATTGTTTTCATGTATTCGTTTATTATTTTACAATCCACGGGTACACAAGTTGGCTACCTGCATCCGATCATTGCTCTTCCTTGAATTAGTAGTAACTGACGTTAAATCACACAAATCAACTTAAAAGCATATACTAGTATGGTTTAATTATCAATGTTTCAACAATTGGTTGTATATATCAAAAGTTAATGTTTCAAATTAGATCAAAGTTTACTATGAAAAATTTTACCTTGACGTTCAAATTCCACATTTTCCATTTGCTTTCAAGAAACATATAGAACCATTCAGCCTAAAATTAAAGTTTATGTGTGTGAAGATTTAAGTTTTTGTTCCTCTATTTCTTGCTATCCTTTTTTAGAAAAGAAAAAAAAATTAAGCTTTTTAATATATTCAAATTCTCAATAGTTGCAATGATTTTTTTTTGGTACTAGATGGATAAAGCTTCCATTCTTGGGGATGCAATAACATACATCAAAGATCTTCAAGAACGTTTGAAGGTTGCAAACGAACAAGCAGCCAAAGCAACAGTGGAATCCGTGGTGTTTGTGAACAAATCTGACGATGCCTCTACCATCATCGCCAGTGACGATTCCTCAGAGGAAAACAGCTCCTCGTCGTCAGACGGAGCGATTCCGGACGTAGAAGCAAGAGTGTCTGGAAAGGATGTCCTTTTGAGGATTCATGGCAAGAAATGCAAAGGCTGTCTTTCAAATATACTAAATCAAATAGAGAAACTTAATCTCACAGTTCTCAACTCTAGTGCTTTGCCATTTGGCAATTTCAGGCTTGATATAACAATTATTGCTCAGATGGATGACGATTTTTCCATGACAGTGAAGGAACTAGTGCAGAAACTAAGACAAGCTTCTCTTGAATTTATGTAAACTTACAAATGACGTAATTAATCCTTAATTTTAGAGATAATAAAGCCTTGTGGAATCCCTAATTAAGGTTTTTTTTTTCTCTTTTGCTTTCCTTTTAGAAATTTTTGCGTGGGGCAAATCTTTGACCACGTTAAGGAAATTTAGGAAAAGAAAAACAACCACATGTGCTGTAAATCAAGCTTTGTTTTTCCCCCTCTTTTAAGATTACTTTTGATTCCAATTTTTTGGGGGTGTCTTCTTTTGCACTTGGATCTAAAATCTTTATGTAAGATTTCGTTTATTGGATTAATTAACTTTTGTTGTAATAATTGTGAAGATCTTACAACTAATTCTATAGATCTGACAGCTCCAATACAACATATAAATTAAAACAAAAACTAATTAGAG

Coding sequence (CDS)

ATGGAAATCTCATCTGCAAAATGGCTGTCTGAAATGGAACTGGAATCTTCATTCATGAATGATTTGGAAATGAACCCTTTTGAGTGCACACTAGAGGAGTTGAGTAGTTTCCAAACATTCTCCGACGAAAGCTACACATCCCACGTAGATCTAGACAATAGTTCTGTACAAACTCCGGCAGCACCGCCACCAGCAAAGCAGGCGAGGACCAGCAGCGGCTCAAGCCGTAGAATTTCTTCGATGGCGACTTCTTCTTCCTCGTCCCAAATCATTTCATTTGGGAACATTGAGATGTCCCCAATGGTTGCTCAACCTTCATATGACAACAACAACAACAACAATAAAACTTCAAATTATTATTGTTCACCAAATAAAAATCATGGGGTTGGAATCAAAAGGTCTGCTGCTGCAGCTATGAATAGTAATAATCGCAGCCCTTTGGTTGCTCAAGATCATGTCTTAGCTGAAAGAAAGCGTAGAGAAAAGCTTAGCCAGCGATTTGTTGCTCTTTCGGCCCTTATTCCAGATCTTAAAAAGGTGACATTTATGTTCCTTATATCCTAA

Protein sequence

MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPAAPPPAKQARTSSGSSRRISSMATSSSSSQIISFGNIEMSPMVAQPSYDNNNNNNKTSNYYCSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKVTFMFLIS
Homology
[Close]
BLAST of CsGy6G028930 vs. NCBI nr
Match: XP_004143425.1 (PREDICTED: transcription factor bHLH18-like [Cucumis sativus] >KGN48660.1 hypothetical protein Csa_6G497110 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 6.2e-58
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX 60
           MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX
Sbjct: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXXXXXXXX 120

Query: 121 XSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKV 180
           XSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKK+
Sbjct: 121 XSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKM 180

[Close]
BLAST of CsGy6G028930 vs. NCBI nr
Match: XP_008440467.1 (PREDICTED: transcription factor bHLH18-like [Cucumis melo] >XP_016899206.1 PREDICTED: transcription factor bHLH18-like [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 132/180 (73.33%), Postives = 137/180 (76.11%), Query Frame = 0 

Query: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX 60
           MEISSA WLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDN+SVQTP 
Sbjct: 1   MEISSANWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNNSVQTP- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXXXXXXXX 120
                              XXXXXXXXX    FGN+E+S MVAQPS              
Sbjct: 61  TAPPPAKQARTSGSSRRIAXXXXXXXXXQIISFGNVELSSMVAQPS-YDNKNNNKTPNYY 120

Query: 121 XSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKV 180
            SPNKNHGVGIKRS  AAMNSNNRSPLVAQ+HVLAERKRREKLSQRFVALSALIPDLKK+
Sbjct: 121 CSPNKNHGVGIKRS-VAAMNSNNRSPLVAQEHVLAERKRREKLSQRFVALSALIPDLKKM 177

[Close]
BLAST of CsGy6G028930 vs. NCBI nr
Match: XP_022132561.1 (transcription factor bHLH19-like isoform X2 [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-32
Identity = 100/202 (49.50%), Postives = 112/202 (55.45%), Query Frame = 0 

Query: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX 60
           MEISSAKWLSEMELES+FM+D +MNPFECTLEEL SFQTFSDESYTSH DLDNSSV+TP 
Sbjct: 1   MEISSAKWLSEMELESAFMDDFQMNPFECTLEEL-SFQTFSDESYTSHADLDNSSVKTPP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF----------------------GNIEM 120
                                                                  GNI++
Sbjct: 61  AKQPKTAANNRQIASMAASSSSSHIISFGNSHSAKVNDNGVNYSNVKPKFEMGCEGNIDL 120

Query: 121 SPMVAQPSXXXXXXXXXXXXXXXSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERK 180
           S ++AQ                   ++ +G GIKR A       NRSPLVAQDHVLAERK
Sbjct: 121 SSVIAQGGSNENQNYC---------SQKYGQGIKRGAGCL----NRSPLVAQDHVLAERK 180

[Close]
BLAST of CsGy6G028930 vs. NCBI nr
Match: XP_022132559.1 (transcription factor bHLH18-like isoform X1 [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-32
Identity = 100/202 (49.50%), Postives = 112/202 (55.45%), Query Frame = 0 

Query: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX 60
           MEISSAKWLSEMELES+FM+D +MNPFECTLEEL SFQTFSDESYTSH DLDNSSV+TP 
Sbjct: 1   MEISSAKWLSEMELESAFMDDFQMNPFECTLEEL-SFQTFSDESYTSHADLDNSSVKTPP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF----------------------GNIEM 120
                                                                  GNI++
Sbjct: 61  AKQPKTAANNRQIASMAASSSSSHIISFGNSHSAKVNDNGVNYSNVKPKFEMGCEGNIDL 120

Query: 121 SPMVAQPSXXXXXXXXXXXXXXXSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERK 180
           S ++AQ                   ++ +G GIKR A       NRSPLVAQDHVLAERK
Sbjct: 121 SSVIAQGGSNENQNYC---------SQKYGQGIKRGAGCL----NRSPLVAQDHVLAERK 180

[Close]
BLAST of CsGy6G028930 vs. NCBI nr
Match: XP_023004096.1 (transcription factor NAI1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 130.2 bits (326), Expect = 7.4e-27
Identity = 94/191 (49.21%), Postives = 103/191 (53.93%), Query Frame = 0 

Query: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQT-- 60
           MEISSAKWLS+MELE+ FM+DLEMNPFECTL EL  FQ FSDESYTSH DLD+ SVQT  
Sbjct: 1   MEISSAKWLSDMELEAPFMDDLEMNPFECTLHEL-GFQAFSDESYTSHTDLDH-SVQTRQ 60

Query: 61  ---PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSP--MVAQPSXXXXXXX 120
                                                FGN   SP     +P+       
Sbjct: 61  PCEVAERPAKQPRATGSWNNSCTASMAASSSSSHVISFGNSHSSPPSNKVKPNFEMGCET 120

Query: 121 XXXXXXXXSPNKNHG----VGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVA 180
                       N      VG+KRSA       NRSPLV QDHV+AERKRREKLSQRFVA
Sbjct: 121 NRDLMSVIEQGSNCSPKSCVGMKRSAGVV----NRSPLVGQDHVIAERKRREKLSQRFVA 180

[Close]
BLAST of CsGy6G028930 vs. TAIR10
Match: AT2G22760.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-09
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 128 GVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKK 180
           G G KR      +   RSP++A++HVLAERKRREKLS++F+ALSAL+P LKK
Sbjct: 99  GRGTKRKTC---SHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKK 147

[Close]
BLAST of CsGy6G028930 vs. TAIR10
Match: AT2G22750.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 130 GIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKV 181
           G KR+ +   + +N     AQDH+LAERKRREKL+QRFVALSALIP LKK+
Sbjct: 110 GTKRAQSLTRSQSN-----AQDHILAERKRREKLTQRFVALSALIPGLKKM 155

[Close]
BLAST of CsGy6G028930 vs. TAIR10
Match: AT4G37850.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-07
Identity = 50/186 (26.88%), Postives = 75/186 (40.32%), Query Frame = 0 

Query: 1   MEISSAKWLSEMEL-ESSFMNDLEMNPFECTLEELS-----SFQTFSDESYTSHVDLDNS 60
           M I S +W SE E+ E+S +    MN     ++E       SF T +D SY   +++   
Sbjct: 1   MSILSTRWFSEQEIEENSIIQQFHMNSIVGEVQEAQYIFPHSFTTNNDPSYDDLIEMKPP 60

Query: 61  SVQTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXX 120
            +                                      ++E        +        
Sbjct: 61  KILETTYISPSSHLPPNSKPHHIHRHSSSRILSFEDYGSNDMEHEYSPTYLNSIFSPKLE 120

Query: 121 XXXXXXXSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALI 180
                    ++ +  G KR+   + N +N     AQDH++AERKRREKL+QRFVALSAL+
Sbjct: 121 AQVQPHQKSDEFNRKGTKRAQPFSRNQSN-----AQDHIIAERKRREKLTQRFVALSALV 180

[Close]
BLAST of CsGy6G028930 vs. TAIR10
Match: AT2G22770.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-07
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 129 VGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKK 180
           VG KR      N   R P + ++HVLAERKRR+KL++R +ALSAL+P LKK
Sbjct: 111 VGSKRK-DCVNNGGRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKK 160

[Close]
BLAST of CsGy6G028930 vs. Swiss-Prot
Match: sp|Q1PF16|BH019_ARATH (Transcription factor bHLH19 OS=Arabidopsis thaliana OX=3702 GN=BHLH19 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 128 GVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKK 180
           G G KR      +   RSP++A++HVLAERKRREKLS++F+ALSAL+P LKK
Sbjct: 99  GRGTKRKTC---SHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKK 147

[Close]
BLAST of CsGy6G028930 vs. Swiss-Prot
Match: sp|Q1PF17|BH018_ARATH (Transcription factor bHLH18 OS=Arabidopsis thaliana OX=3702 GN=BHLH18 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-07
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 130 GIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKV 181
           G KR+ +   + +N     AQDH+LAERKRREKL+QRFVALSALIP LKK+
Sbjct: 110 GTKRAQSLTRSQSN-----AQDHILAERKRREKLTQRFVALSALIPGLKKM 155

[Close]
BLAST of CsGy6G028930 vs. Swiss-Prot
Match: sp|Q9T072|BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana OX=3702 GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-06
Identity = 50/186 (26.88%), Postives = 75/186 (40.32%), Query Frame = 0 

Query: 1   MEISSAKWLSEMEL-ESSFMNDLEMNPFECTLEELS-----SFQTFSDESYTSHVDLDNS 60
           M I S +W SE E+ E+S +    MN     ++E       SF T +D SY   +++   
Sbjct: 1   MSILSTRWFSEQEIEENSIIQQFHMNSIVGEVQEAQYIFPHSFTTNNDPSYDDLIEMKPP 60

Query: 61  SVQTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXX 120
            +                                      ++E        +        
Sbjct: 61  KILETTYISPSSHLPPNSKPHHIHRHSSSRILSFEDYGSNDMEHEYSPTYLNSIFSPKLE 120

Query: 121 XXXXXXXSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALI 180
                    ++ +  G KR+   + N +N     AQDH++AERKRREKL+QRFVALSAL+
Sbjct: 121 AQVQPHQKSDEFNRKGTKRAQPFSRNQSN-----AQDHIIAERKRREKLTQRFVALSALV 180

[Close]
BLAST of CsGy6G028930 vs. Swiss-Prot
Match: sp|Q8S3F1|BH020_ARATH (Transcription factor NAI1 OS=Arabidopsis thaliana OX=3702 GN=NAI1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 129 VGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKK 180
           VG KR      N   R P + ++HVLAERKRR+KL++R +ALSAL+P LKK
Sbjct: 111 VGSKRK-DCVNNGGRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKK 160

[Close]
BLAST of CsGy6G028930 vs. TrEMBL
Match: tr|A0A0A0KG27|A0A0A0KG27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497110 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.1e-58
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX 60
           MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX
Sbjct: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXXXXXXXX 120

Query: 121 XSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKV 180
           XSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKK+
Sbjct: 121 XSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKM 180

[Close]
BLAST of CsGy6G028930 vs. TrEMBL
Match: tr|A0A1S4DT89|A0A1S4DT89_CUCME (transcription factor bHLH18-like OS=Cucumis melo OX=3656 GN=LOC103484896 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.8e-50
Identity = 132/180 (73.33%), Postives = 137/180 (76.11%), Query Frame = 0 

Query: 1   MEISSAKWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNSSVQTPX 60
           MEISSA WLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDN+SVQTP 
Sbjct: 1   MEISSANWLSEMELESSFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDLDNNSVQTP- 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPSXXXXXXXXXXXXXX 120
                              XXXXXXXXX    FGN+E+S MVAQPS              
Sbjct: 61  TAPPPAKQARTSGSSRRIAXXXXXXXXXQIISFGNVELSSMVAQPS-YDNKNNNKTPNYY 120

Query: 121 XSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHVLAERKRREKLSQRFVALSALIPDLKKV 180
            SPNKNHGVGIKRS  AAMNSNNRSPLVAQ+HVLAERKRREKLSQRFVALSALIPDLKK+
Sbjct: 121 CSPNKNHGVGIKRS-VAAMNSNNRSPLVAQEHVLAERKRREKLSQRFVALSALIPDLKKM 177

[Close]
BLAST of CsGy6G028930 vs. TrEMBL
Match: tr|A0A2P6RPH5|A0A2P6RPH5_ROSCH (Putative transcription factor bHLH family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0109611 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.4e-13
Identity = 74/207 (35.75%), Postives = 95/207 (45.89%), Query Frame = 0 

Query: 3   ISSAKWLSEMELES-SFMNDLEMNP-FECTLEELSSFQTFSDESYTSHV-------DLDN 62
           ISSAKW+SE+E+E  +F+N  EMN   + +LE+L +FQ+FS ESY+S+        D+D 
Sbjct: 4   ISSAKWVSELEMEDPTFLNQYEMNSHLDYSLEDL-NFQSFSAESYSSYPDFTPHQNDVDQ 63

Query: 63  SSVQTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMS-------PMVAQPS 122
              + P                                 F N   S           +P 
Sbjct: 64  RPAKQPKNNHSNWNSCTTTHDHIITVPRASSSASSHLISFDNSNSSAYGSLDCTTTVKPK 123

Query: 123 -------------XXXXXXXXXXXXXXXSPNKNHGVGIKRSAAAAMNSNNRSPLVAQDHV 181
                                       SPN+ +G GIKR+A        RSPL AQDHV
Sbjct: 124 NEVLGSGGKLNSISNMISQGNSYDPQTCSPNRAYGQGIKRAATV-----TRSPLHAQDHV 183

[Close]
BLAST of CsGy6G028930 vs. TrEMBL
Match: tr|A0A251NTJ5|A0A251NTJ5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G212000 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 95/217 (43.78%), Postives = 123/217 (56.68%), Query Frame = 0 

Query: 3   ISSAKWLSEMELES-SFMNDLEMNPFECTLEELSSFQTFSDESYTSHV--------DLDN 62
           ISSAKW+S++E+E  +F++  EMN  + +L++L +FQ+FS ESY+S+         +  N
Sbjct: 4   ISSAKWVSDLEMEDPTFIHQYEMNSLDYSLDDL-NFQSFSSESYSSYPNFTPKATHNFSN 63

Query: 63  SSVQTP------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           +S++TP                                XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 64  ASIETPQQAGTHERPAKQPKNHTTWNPCTTDHTIMAKAXXXXXXXXXXXXXXXXXXXXXX 123

Query: 123 XXXFGNIE--MSPM-VAQPSXXXXXXXXXXXXXXXSP---NKNHGVGIKRSAAAAMNSNN 181
           XX +G ++  M P    + S                P   +  HG GIKR+A        
Sbjct: 124 XXFYGTLDNTMKPKNEVEYSNGKLNLTTLISQGSYDPQTCSPKHGQGIKRAATV-----T 183

[Close]
BLAST of CsGy6G028930 vs. TrEMBL
Match: tr|A0A2P4HTX5|A0A2P4HTX5_QUESU (Transcription factor bhlh25 OS=Quercus suber OX=58331 GN=CFP56_61799 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 65/207 (31.40%), Postives = 90/207 (43.48%), Query Frame = 0 

Query: 1   MEISSAKWLSEMELES-SFMNDLEMNPFECTLEELSSFQTFSDESYTSHVDL-------- 60
           ME SSAKW+SE+E+E  +F++  E+N F  +L+ L  F++FS ESY S+ DL        
Sbjct: 73  MESSSAKWISELEMEDPAFIHQYEINSFGYSLDNL-DFRSFSGESYPSNPDLNPKSTYNF 132

Query: 61  -----DNSSVQTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGNIEMSPMVAQPS 120
                +N  +                                    F N    P ++Q  
Sbjct: 133 HASVIENPQIDLGRPAKQLKTKSWNSCATDHIPSKAASSSSSHLISFENSNSPPAISQQF 192

Query: 121 XXXXXXXXXXXXXXXSPNKNHGVGIKRSAAAAMNSNN-------------RSPLVAQDHV 180
                            N N    I  S+    N ++             R+PL AQDHV
Sbjct: 193 YGLDCTMRPKNEAVSDRNTNFPAMISESSFGMQNCSSKHGEVPKKVATMTRTPLHAQDHV 252

The following BLAST results are available for this feature:
BLAST of CsGy6G028930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143425.16.2e-5899.44PREDICTED: transcription factor bHLH18-like [Cucumis sativus] >KGN48660.1 hypoth... [more]
XP_008440467.12.8e-5073.33PREDICTED: transcription factor bHLH18-like [Cucumis melo] >XP_016899206.1 PREDI... [more]
XP_022132561.12.6e-3249.50transcription factor bHLH19-like isoform X2 [Momordica charantia][more]
XP_022132559.12.6e-3249.50transcription factor bHLH18-like isoform X1 [Momordica charantia][more]
XP_023004096.17.4e-2749.21transcription factor NAI1-like isoform X1 [Cucurbita maxima][more]
BLAST of CsGy6G028930 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22760.16.5e-0959.62basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G22750.21.1e-0862.75basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G37850.12.1e-0726.88basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G22770.16.1e-0754.90basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of CsGy6G028930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1PF16|BH019_ARATH1.2e-0759.62Transcription factor bHLH19 OS=Arabidopsis thaliana OX=3702 GN=BHLH19 PE=1 SV=1[more]
sp|Q1PF17|BH018_ARATH2.0e-0762.75Transcription factor bHLH18 OS=Arabidopsis thaliana OX=3702 GN=BHLH18 PE=1 SV=1[more]
sp|Q9T072|BH025_ARATH3.8e-0626.88Transcription factor bHLH25 OS=Arabidopsis thaliana OX=3702 GN=BHLH25 PE=2 SV=2[more]
sp|Q8S3F1|BH020_ARATH1.1e-0554.90Transcription factor NAI1 OS=Arabidopsis thaliana OX=3702 GN=NAI1 PE=2 SV=1[more]
BLAST of CsGy6G028930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KG27|A0A0A0KG27_CUCSA4.1e-5899.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497110 PE=4 SV=1[more]
tr|A0A1S4DT89|A0A1S4DT89_CUCME1.8e-5073.33transcription factor bHLH18-like OS=Cucumis melo OX=3656 GN=LOC103484896 PE=4 SV... [more]
tr|A0A2P6RPH5|A0A2P6RPH5_ROSCH2.4e-1335.75Putative transcription factor bHLH family OS=Rosa chinensis OX=74649 GN=RchiOBHm... [more]
tr|A0A251NTJ5|A0A251NTJ5_PRUPE2.2e-1143.78Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G212000 PE=4 SV=1[more]
tr|A0A2P4HTX5|A0A2P4HTX5_QUESU2.9e-1131.40Transcription factor bhlh25 OS=Quercus suber OX=58331 GN=CFP56_61799 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G028930.1CsGy6G028930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 139..181
e-value: 1.6E-5
score: 26.6
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 150..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..86
NoneNo IPR availablePANTHERPTHR23042CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAScoord: 37..180
NoneNo IPR availablePANTHERPTHR23042:SF100SUBFAMILY NOT NAMEDcoord: 37..180
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 152..181
e-value: 3.10277E-5
score: 38.7343

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G028930Cla014073Watermelon (97103) v1cgybwmB468
CsGy6G028930Csa6G497110Cucumber (Chinese Long) v2cgybcuB281
CsGy6G028930MELO3C007679Melon (DHL92) v3.5.1cgybmeB444
CsGy6G028930ClCG01G018050Watermelon (Charleston Gray)cgybwcgB399
CsGy6G028930CSPI06G29360Wild cucumber (PI 183967)cgybcpiB287
CsGy6G028930CmaCh03G008680Cucurbita maxima (Rimu)cgybcmaB831
CsGy6G028930CmoCh03G009080Cucurbita moschata (Rifu)cgybcmoB811
CsGy6G028930Lsi01G008440Bottle gourd (USVL1VR-Ls)cgyblsiB398
CsGy6G028930MELO3C007679.2Melon (DHL92) v3.6.1cgybmedB440
CsGy6G028930Cla97C01G017290Watermelon (97103) v2cgybwmbB394
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G028930Cucumber (Gy14) v2cgybcgybB065
CsGy6G028930Cucurbita maxima (Rimu)cgybcmaB849
CsGy6G028930Cucurbita maxima (Rimu)cgybcmaB861
CsGy6G028930Cucurbita moschata (Rifu)cgybcmoB829
CsGy6G028930Cucurbita moschata (Rifu)cgybcmoB843
CsGy6G028930Cucurbita pepo (Zucchini)cgybcpeB710
CsGy6G028930Cucurbita pepo (Zucchini)cgybcpeB718
CsGy6G028930Cucurbita pepo (Zucchini)cgybcpeB810
CsGy6G028930Cucumber (Chinese Long) v2cgybcuB250
CsGy6G028930Cucumber (Chinese Long) v2cgybcuB265
CsGy6G028930Bottle gourd (USVL1VR-Ls)cgyblsiB434
CsGy6G028930Bottle gourd (USVL1VR-Ls)cgyblsiB449
CsGy6G028930Melon (DHL92) v3.5.1cgybmeB413
CsGy6G028930Melon (DHL92) v3.5.1cgybmeB423
CsGy6G028930Melon (DHL92) v3.6.1cgybmedB411
CsGy6G028930Watermelon (Charleston Gray)cgybwcgB398
CsGy6G028930Watermelon (97103) v1cgybwmB499
CsGy6G028930Wild cucumber (PI 183967)cgybcpiB258
CsGy6G028930Wild cucumber (PI 183967)cgybcpiB273
CsGy6G028930Silver-seed gourdcarcgybB0003
CsGy6G028930Silver-seed gourdcarcgybB0063
CsGy6G028930Silver-seed gourdcarcgybB0418
CsGy6G028930Cucumber (Chinese Long) v3cgybcucB263
CsGy6G028930Cucumber (Chinese Long) v3cgybcucB298
CsGy6G028930Watermelon (97103) v2cgybwmbB478
CsGy6G028930Wax gourdcgybwgoB591